Wall clock time and date at job start Mon Mar 30 2020 02:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47094 * 2 1 4 4 H 1.08997 * 109.47486 * 305.93887 * 3 2 1 5 5 C 1.50698 * 109.47270 * 185.93422 * 3 2 1 6 6 H 1.08003 * 119.99969 * 237.62662 * 5 3 2 7 7 C 1.37871 * 120.00220 * 57.62842 * 5 3 2 8 8 N 1.31518 * 119.99780 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00324 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47208 * 59.99752 * 9 7 5 11 11 H 1.48501 * 109.47375 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47075 * 299.99926 * 9 7 5 13 13 C 1.53001 * 109.47047 * 65.93430 * 3 2 1 14 14 C 1.50701 * 115.56100 * 75.62084 * 13 3 2 15 15 O 1.20829 * 120.00135 * 207.34230 * 14 13 3 16 16 O 1.34233 * 119.99926 * 27.34896 * 14 13 3 17 17 C 1.53004 * 117.50007 * 221.31295 * 13 3 2 18 18 C 1.53003 * 60.00006 * 107.48886 * 17 13 3 19 19 H 1.08993 * 117.49731 * 252.50695 * 18 17 13 20 20 C 1.52996 * 117.49790 * 107.51252 * 18 17 13 21 21 H 1.09003 * 109.47038 * 172.26108 * 1 2 3 22 22 H 1.08998 * 109.46864 * 292.25533 * 1 2 3 23 23 H 1.08993 * 109.46959 * 52.25972 * 1 2 3 24 24 H 1.09000 * 109.47405 * 240.00392 * 2 1 3 25 25 H 1.08999 * 109.47224 * 120.00118 * 2 1 3 26 26 H 0.96998 * 120.00127 * 180.02562 * 8 7 5 27 27 H 0.96699 * 116.99739 * 185.02207 * 16 14 13 28 28 H 1.08989 * 117.49822 * 359.97438 * 17 13 3 29 29 H 1.08999 * 117.51413 * 214.97124 * 17 13 3 30 30 H 1.09004 * 109.47677 * 111.25156 * 20 18 17 31 31 H 1.09002 * 109.47315 * 231.25545 * 20 18 17 32 32 H 1.09003 * 109.47466 * 351.25198 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5925 1.9861 -0.8320 5 6 3.5398 1.4451 -0.1469 6 1 4.1551 1.9193 0.6035 7 6 4.1266 0.8421 -1.2391 8 7 3.3774 0.2642 -2.1526 9 14 5.9857 0.8447 -1.4209 10 1 6.5977 0.1535 -0.2577 11 1 6.3619 0.1367 -2.6709 12 1 6.4755 2.2454 -1.4782 13 6 1.6554 2.1194 1.3171 14 6 2.4763 1.7214 2.5167 15 8 1.9955 1.7787 3.6237 16 8 3.7416 1.3035 2.3553 17 6 1.1575 3.5646 1.2497 18 6 0.1748 2.4299 1.5459 19 1 -0.5253 2.1520 0.7580 20 6 -0.3595 2.3130 2.9747 21 1 -0.3633 -1.0183 -0.1384 22 1 -0.3633 0.3892 0.9511 23 1 -0.3633 0.6290 -0.8126 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.7902 -0.1603 -2.9209 27 1 4.2038 0.9883 3.1440 28 1 1.1044 4.0332 0.2672 29 1 1.4235 4.2277 2.0729 30 1 -1.4203 2.5633 2.9878 31 1 -0.2227 1.2921 3.3314 32 1 0.1839 3.0002 3.6233 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703308939.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:36 Heat of formation + Delta-G solvation = -88.971704 kcal Electronic energy + Delta-G solvation = -15132.355821 eV Core-core repulsion = 12672.058947 eV Total energy + Delta-G solvation = -2460.296874 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.60055 -38.80038 -37.03862 -35.35077 -33.14979 -30.52158 -28.38174 -25.84333 -24.71092 -22.65442 -21.50728 -20.57905 -18.84377 -18.24318 -16.74399 -16.41023 -16.14326 -15.64501 -14.97042 -14.65667 -14.12791 -14.07812 -13.62242 -13.43659 -13.12409 -12.87774 -12.66246 -12.48541 -12.25975 -12.18497 -11.93155 -11.81159 -11.49297 -10.95950 -10.86521 -10.49282 -10.36041 -10.21240 -7.94540 -6.02526 1.31841 1.47615 1.48248 1.55165 2.42146 2.52895 2.96565 3.32552 3.80301 4.04031 4.23033 4.48926 4.50559 4.60369 4.71795 4.86778 4.89593 4.99671 5.02982 5.15964 5.21208 5.31640 5.40158 5.56152 5.60467 5.79327 5.87946 6.00378 6.22972 6.53880 7.06779 7.33467 7.62355 9.08504 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.034580 B = 0.012495 C = 0.010615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.520993 B = 2240.446726 C = 2637.143449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C 0.089 3.911 4 H 0.013 0.987 5 C -0.501 4.501 6 H 0.079 0.921 7 C 0.009 3.991 8 N -0.923 5.923 9 Si 0.946 3.054 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.275 1.275 13 C -0.139 4.139 14 C 0.524 3.476 15 O -0.552 6.552 16 O -0.482 6.482 17 C -0.140 4.140 18 C -0.118 4.118 19 H 0.126 0.874 20 C -0.104 4.104 21 H 0.043 0.957 22 H 0.063 0.937 23 H 0.047 0.953 24 H 0.070 0.930 25 H 0.014 0.986 26 H 0.255 0.745 27 H 0.398 0.602 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.316 3.161 6.486 8.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C 0.071 3.929 4 H 0.031 0.969 5 C -0.539 4.539 6 H 0.096 0.904 7 C -0.188 4.188 8 N -0.564 5.564 9 Si 0.773 3.227 10 H -0.200 1.200 11 H -0.219 1.219 12 H -0.201 1.201 13 C -0.140 4.140 14 C 0.371 3.629 15 O -0.445 6.445 16 O -0.292 6.292 17 C -0.177 4.177 18 C -0.136 4.136 19 H 0.144 0.856 20 C -0.161 4.161 21 H 0.062 0.938 22 H 0.082 0.918 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.033 0.967 26 H 0.064 0.936 27 H 0.257 0.743 28 H 0.127 0.873 29 H 0.119 0.881 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.599 3.236 6.263 8.417 hybrid contribution 1.591 -0.535 0.082 1.680 sum -3.008 2.700 6.345 7.523 Atomic orbital electron populations 1.22010 0.96622 1.00461 1.01227 1.21467 0.94170 0.99312 1.00275 1.18195 0.95114 0.91776 0.87837 0.96875 1.21805 0.92475 1.33907 1.05729 0.90360 1.25602 1.01266 0.95850 0.96075 1.69981 1.35807 1.38787 1.11867 0.85801 0.82125 0.77950 0.76789 1.19971 1.21939 1.20086 1.21460 0.95816 1.02053 0.94646 1.22468 0.80217 0.71526 0.88733 1.90594 1.72298 1.53617 1.27957 1.85206 1.26386 1.74893 1.42691 1.23251 1.01627 0.89025 1.03812 1.22789 0.89816 1.00638 1.00318 0.85628 1.21324 1.00510 1.01679 0.92556 0.93792 0.91786 0.93431 0.91190 0.96713 0.93572 0.74282 0.87329 0.88099 0.90615 0.93489 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 8.47 71.98 0.61 -4.89 16 2 C -0.11 -5.34 5.20 30.59 0.16 -5.18 16 3 C 0.09 4.23 1.83 -11.54 -0.02 4.21 16 4 H 0.01 0.68 7.98 -2.39 -0.02 0.66 16 5 C -0.50 -26.26 7.25 25.60 0.19 -26.08 16 6 H 0.08 4.06 5.38 -2.91 -0.02 4.04 16 7 C 0.01 0.47 5.29 84.65 0.45 0.92 16 8 N -0.92 -52.23 11.11 21.45 0.24 -51.99 16 9 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 C -0.14 -5.52 1.63 -52.92 -0.09 -5.60 16 14 C 0.52 21.09 7.57 71.24 0.54 21.62 16 15 O -0.55 -22.08 13.94 21.95 0.31 -21.78 16 16 O -0.48 -18.78 9.60 -51.44 -0.49 -19.27 16 17 C -0.14 -4.67 9.53 30.60 0.29 -4.38 16 18 C -0.12 -3.83 4.08 -10.79 -0.04 -3.88 16 19 H 0.13 3.87 6.09 -2.39 -0.01 3.85 16 20 C -0.10 -3.07 8.43 71.98 0.61 -2.46 16 21 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.06 2.18 5.37 -2.39 -0.01 2.17 16 23 H 0.05 1.74 7.97 -2.39 -0.02 1.72 16 24 H 0.07 3.75 5.73 -2.39 -0.01 3.74 16 25 H 0.01 0.68 7.93 -2.39 -0.02 0.66 16 26 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 27 H 0.40 11.21 9.10 -74.06 -0.67 10.53 16 28 H 0.11 3.48 8.12 -2.39 -0.02 3.46 16 29 H 0.10 3.09 8.05 -2.39 -0.02 3.07 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.05 1.52 7.47 -2.39 -0.02 1.50 16 32 H 0.05 1.72 6.84 -2.39 -0.02 1.70 16 Total: -1.00 -60.91 255.39 5.22 -55.69 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.45 Total: 17.56 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 2.69 Total: -25.72 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.24 Total: -51.99 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.19 Total: -41.05 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -60.91 5.22 -55.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703308939.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.278 kcal (2) G-P(sol) polarization free energy of solvation -60.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds