Wall clock time and date at job start Mon Mar 30 2020 02:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 115.54753 * 2 1 4 4 C 1.52998 * 117.50138 * 214.33330 * 2 1 3 5 5 C 1.53001 * 117.49787 * 145.66945 * 2 1 3 6 6 C 1.52991 * 117.50105 * 0.02562 * 5 2 1 7 7 C 1.53005 * 109.47065 * 174.27155 * 6 5 2 8 8 C 1.53001 * 109.47004 * 185.79072 * 7 6 5 9 9 C 1.50696 * 109.46987 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00093 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99730 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00085 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99755 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47358 * 59.99717 * 13 11 9 15 15 H 1.48503 * 109.47294 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47275 * 300.00048 * 13 11 9 17 17 C 1.50701 * 117.49574 * 215.00074 * 5 2 1 18 18 O 1.20830 * 120.00152 * 8.58292 * 17 5 2 19 19 O 1.34227 * 120.00053 * 188.57758 * 17 5 2 20 20 H 1.09005 * 109.46760 * 154.41314 * 1 2 3 21 21 H 1.09000 * 109.47302 * 274.41231 * 1 2 3 22 22 H 1.08995 * 109.47306 * 34.41894 * 1 2 3 23 23 H 1.08998 * 117.49800 * 359.97073 * 4 2 1 24 24 H 1.09000 * 117.50062 * 144.97805 * 4 2 1 25 25 H 1.08997 * 109.47600 * 294.27176 * 6 5 2 26 26 H 1.09000 * 109.47041 * 54.27366 * 6 5 2 27 27 H 1.09001 * 109.46937 * 305.78594 * 7 6 5 28 28 H 1.08999 * 109.46983 * 65.79079 * 7 6 5 29 29 H 1.08998 * 109.47319 * 300.00393 * 8 7 6 30 30 H 1.08999 * 109.47245 * 60.00167 * 8 7 6 31 31 H 0.97006 * 119.99997 * 179.97438 * 12 11 9 32 32 H 0.96705 * 117.00244 * 180.02562 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1206 -0.7654 5 6 2.2364 -1.1207 0.7654 6 6 1.3589 -2.1560 1.4717 7 6 2.2422 -3.2620 2.0527 8 6 1.3587 -4.3687 2.6321 9 6 2.2286 -5.4583 3.2039 10 1 3.3041 -5.3701 3.1589 11 6 1.6515 -6.5678 3.7844 12 7 0.3420 -6.6750 3.8396 13 14 2.7299 -7.9181 4.4938 14 1 3.5856 -7.3548 5.5688 15 1 1.8725 -8.9923 5.0560 16 1 3.5890 -8.4804 3.4210 17 6 3.5290 -0.7804 1.4615 18 8 3.8911 0.3700 1.5348 19 8 4.2780 -1.7553 2.0002 20 1 -0.3633 -0.9269 -0.4439 21 1 -0.3634 0.0791 1.0246 22 1 -0.3633 0.8477 -0.5808 23 1 1.6113 -1.8582 -1.2686 24 1 3.1712 -0.8744 -1.2692 25 1 0.8041 -1.6737 2.2764 26 1 0.6593 -2.5880 0.7561 27 1 2.8723 -3.6751 1.2651 28 1 2.8706 -2.8483 2.8415 29 1 0.7284 -3.9556 3.4196 30 1 0.7303 -4.7823 1.8434 31 1 -0.0640 -7.4557 4.2477 32 1 5.0986 -1.4882 2.4367 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703310220.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:55 Heat of formation + Delta-G solvation = -91.485855 kcal Electronic energy + Delta-G solvation = -14137.013956 eV Core-core repulsion = 11676.608060 eV Total energy + Delta-G solvation = -2460.405896 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.48745 -37.74657 -35.96164 -33.93115 -31.82786 -28.94428 -27.34569 -24.52378 -23.17044 -21.33009 -20.20228 -18.99843 -17.75366 -16.50103 -16.04165 -15.54483 -14.46056 -14.18722 -14.06992 -13.66015 -13.24886 -12.67050 -12.36331 -11.91200 -11.76817 -11.55055 -11.39919 -11.33602 -10.81557 -10.63745 -10.48118 -10.30310 -10.02808 -9.86022 -9.43450 -9.11840 -8.94615 -8.28811 -5.94791 -3.96170 2.28481 3.16143 3.36122 3.40250 3.42965 3.74747 4.49423 4.65257 4.72734 4.94937 5.29215 5.33300 5.40900 5.68986 5.73190 5.75605 5.89219 6.00556 6.01506 6.20093 6.28846 6.50680 6.66982 6.87754 7.05506 7.31100 7.75908 7.91340 8.07178 8.13275 8.51117 9.11335 9.67329 11.16702 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.041262 B = 0.007047 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.425208 B = 3972.283535 C = 4450.519244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 H 0.113 0.887 4 C -0.146 4.146 5 C -0.132 4.132 6 C -0.079 4.079 7 C -0.108 4.108 8 C 0.020 3.980 9 C -0.516 4.516 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.520 3.480 18 O -0.531 6.531 19 O -0.487 6.487 20 H 0.063 0.937 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.110 0.890 24 H 0.096 0.904 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.013 0.987 30 H 0.013 0.987 31 H 0.260 0.740 32 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.724 11.147 -7.401 13.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.140 4.140 3 H 0.131 0.869 4 C -0.183 4.183 5 C -0.133 4.133 6 C -0.116 4.116 7 C -0.146 4.146 8 C -0.017 4.017 9 C -0.555 4.555 10 H 0.073 0.927 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.203 1.203 17 C 0.364 3.636 18 O -0.421 6.421 19 O -0.297 6.297 20 H 0.082 0.918 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.129 0.871 24 H 0.114 0.886 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.031 0.969 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 2.312 11.207 -7.510 13.687 hybrid contribution 1.174 -0.663 0.774 1.554 sum 3.486 10.544 -6.736 12.988 Atomic orbital electron populations 1.21383 0.91833 1.02231 1.02505 1.22527 0.95851 0.94453 1.01199 0.86895 1.23302 1.02866 1.01462 0.90650 1.21344 0.93572 1.03515 0.94847 1.21277 0.96903 0.94279 0.99145 1.21783 0.97689 0.95208 0.99882 1.19117 0.94711 0.92197 0.95636 1.21253 0.93139 1.03728 1.37335 0.92696 1.25030 0.94906 0.98339 0.96299 1.69956 1.09152 1.29391 1.45275 0.86682 0.80392 0.81632 0.79417 1.20316 1.21368 1.20293 1.22298 0.84275 0.82373 0.74635 1.90659 1.72086 1.22069 1.57262 1.84962 1.36635 1.40441 1.67667 0.91841 0.91611 0.91944 0.87129 0.88595 0.91766 0.90979 0.93040 0.91752 0.96894 0.96878 0.93064 0.74287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.19 37.16 0.34 -0.96 16 2 C -0.12 -1.51 5.91 -90.62 -0.54 -2.05 16 3 H 0.11 1.43 7.70 -51.93 -0.40 1.03 16 4 C -0.15 -1.78 9.53 -26.69 -0.25 -2.04 16 5 C -0.13 -1.95 2.36 -155.62 -0.37 -2.32 16 6 C -0.08 -1.33 4.43 -26.73 -0.12 -1.45 16 7 C -0.11 -2.24 3.74 -26.73 -0.10 -2.34 16 8 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 9 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 10 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 12 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 13 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 17 C 0.52 8.24 7.67 36.01 0.28 8.51 16 18 O -0.53 -9.25 17.05 -18.75 -0.32 -9.57 16 19 O -0.49 -7.15 9.74 -39.25 -0.38 -7.54 16 20 H 0.06 0.66 7.56 -51.93 -0.39 0.27 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.11 1.24 7.99 -51.93 -0.42 0.83 16 24 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.07 1.17 7.54 -51.93 -0.39 0.77 16 27 H 0.05 1.07 8.00 -51.93 -0.42 0.66 16 28 H 0.06 1.34 6.00 -51.93 -0.31 1.03 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.40 3.98 9.10 45.56 0.41 4.39 16 LS Contribution 272.12 15.07 4.10 4.10 Total: -1.00 -32.68 272.12 -6.18 -38.86 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -3.99 Total: -0.32 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -1.31 Total: -15.86 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.74 Total: -26.51 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.70 Total: -17.11 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.68 -6.18 -38.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703310220.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.627 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds