Wall clock time and date at job start Mon Mar 30 2020 02:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 115.54753 * 2 1 4 4 C 1.52998 * 117.50138 * 214.33330 * 2 1 3 5 5 C 1.53001 * 117.49787 * 145.66945 * 2 1 3 6 6 C 1.52991 * 117.50105 * 0.02562 * 5 2 1 7 7 C 1.53005 * 109.47065 * 174.27155 * 6 5 2 8 8 C 1.53001 * 109.47004 * 185.79072 * 7 6 5 9 9 C 1.50696 * 109.46987 * 179.97438 * 8 7 6 10 10 H 1.07996 * 120.00093 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99730 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00085 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99755 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47358 * 59.99717 * 13 11 9 15 15 H 1.48503 * 109.47294 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47275 * 300.00048 * 13 11 9 17 17 C 1.50701 * 117.49574 * 215.00074 * 5 2 1 18 18 O 1.20830 * 120.00152 * 8.58292 * 17 5 2 19 19 O 1.34227 * 120.00053 * 188.57758 * 17 5 2 20 20 H 1.09005 * 109.46760 * 154.41314 * 1 2 3 21 21 H 1.09000 * 109.47302 * 274.41231 * 1 2 3 22 22 H 1.08995 * 109.47306 * 34.41894 * 1 2 3 23 23 H 1.08998 * 117.49800 * 359.97073 * 4 2 1 24 24 H 1.09000 * 117.50062 * 144.97805 * 4 2 1 25 25 H 1.08997 * 109.47600 * 294.27176 * 6 5 2 26 26 H 1.09000 * 109.47041 * 54.27366 * 6 5 2 27 27 H 1.09001 * 109.46937 * 305.78594 * 7 6 5 28 28 H 1.08999 * 109.46983 * 65.79079 * 7 6 5 29 29 H 1.08998 * 109.47319 * 300.00393 * 8 7 6 30 30 H 1.08999 * 109.47245 * 60.00167 * 8 7 6 31 31 H 0.97006 * 119.99997 * 179.97438 * 12 11 9 32 32 H 0.96705 * 117.00244 * 180.02562 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1206 -0.7654 5 6 2.2364 -1.1207 0.7654 6 6 1.3589 -2.1560 1.4717 7 6 2.2422 -3.2620 2.0527 8 6 1.3587 -4.3687 2.6321 9 6 2.2286 -5.4583 3.2039 10 1 3.3041 -5.3701 3.1589 11 6 1.6515 -6.5678 3.7844 12 7 0.3420 -6.6750 3.8396 13 14 2.7299 -7.9181 4.4938 14 1 3.5856 -7.3548 5.5688 15 1 1.8725 -8.9923 5.0560 16 1 3.5890 -8.4804 3.4210 17 6 3.5290 -0.7804 1.4615 18 8 3.8911 0.3700 1.5348 19 8 4.2780 -1.7553 2.0002 20 1 -0.3633 -0.9269 -0.4439 21 1 -0.3634 0.0791 1.0246 22 1 -0.3633 0.8477 -0.5808 23 1 1.6113 -1.8582 -1.2686 24 1 3.1712 -0.8744 -1.2692 25 1 0.8041 -1.6737 2.2764 26 1 0.6593 -2.5880 0.7561 27 1 2.8723 -3.6751 1.2651 28 1 2.8706 -2.8483 2.8415 29 1 0.7284 -3.9556 3.4196 30 1 0.7303 -4.7823 1.8434 31 1 -0.0640 -7.4557 4.2477 32 1 5.0986 -1.4882 2.4367 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703310220.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:55 Heat of formation + Delta-G solvation = -111.743772 kcal Electronic energy + Delta-G solvation = -14137.892405 eV Core-core repulsion = 11676.608060 eV Total energy + Delta-G solvation = -2461.284345 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.67402 -38.86436 -37.22686 -35.82572 -33.73643 -30.15326 -28.90131 -26.02254 -24.80197 -22.46260 -21.89631 -20.14709 -19.02147 -18.37338 -17.47023 -16.84401 -16.47310 -15.56343 -15.28827 -14.89528 -14.44453 -14.14601 -13.82222 -13.52167 -13.32269 -12.92179 -12.73949 -12.57734 -12.42398 -12.40006 -12.08906 -11.71533 -11.40210 -11.35137 -11.14610 -10.88207 -10.61371 -10.49571 -8.16407 -6.26544 1.09164 1.41087 1.44086 1.51942 2.09641 2.43407 2.69798 3.16490 3.53578 3.73501 3.87541 4.20827 4.37910 4.50819 4.60284 4.70728 4.78233 4.93323 4.96358 5.05481 5.17643 5.18742 5.27783 5.39566 5.43823 5.59308 5.63987 5.86354 5.96107 6.32860 6.90743 7.03157 7.42177 8.95226 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.041262 B = 0.007047 C = 0.006290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.425208 B = 3972.283535 C = 4450.519244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.109 4.109 3 H 0.113 0.887 4 C -0.132 4.132 5 C -0.158 4.158 6 C -0.068 4.068 7 C -0.092 4.092 8 C 0.023 3.977 9 C -0.540 4.540 10 H 0.059 0.941 11 C -0.002 4.002 12 N -0.935 5.935 13 Si 0.962 3.038 14 H -0.268 1.268 15 H -0.283 1.283 16 H -0.267 1.267 17 C 0.522 3.478 18 O -0.551 6.551 19 O -0.496 6.496 20 H 0.066 0.934 21 H 0.059 0.941 22 H 0.084 0.916 23 H 0.123 0.877 24 H 0.107 0.893 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.049 0.951 28 H 0.062 0.938 29 H -0.013 1.013 30 H -0.008 1.008 31 H 0.263 0.737 32 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.504 11.283 -8.074 14.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.127 4.127 3 H 0.131 0.869 4 C -0.168 4.168 5 C -0.159 4.159 6 C -0.105 4.105 7 C -0.129 4.129 8 C -0.014 4.014 9 C -0.578 4.578 10 H 0.077 0.923 11 C -0.199 4.199 12 N -0.575 5.575 13 Si 0.787 3.213 14 H -0.193 1.193 15 H -0.209 1.209 16 H -0.192 1.192 17 C 0.367 3.633 18 O -0.443 6.443 19 O -0.309 6.309 20 H 0.085 0.915 21 H 0.078 0.922 22 H 0.102 0.898 23 H 0.141 0.859 24 H 0.125 0.875 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.006 0.994 30 H 0.010 0.990 31 H 0.071 0.929 32 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 3.112 11.349 -8.182 14.333 hybrid contribution 0.928 -0.697 0.990 1.526 sum 4.041 10.652 -7.192 13.473 Atomic orbital electron populations 1.21435 0.90564 1.03420 1.02600 1.22616 0.96759 0.93899 0.99416 0.86923 1.23451 1.03494 1.01314 0.88577 1.21286 0.93411 1.04841 0.96362 1.21052 0.96561 0.93619 0.99270 1.21542 0.97159 0.94653 0.99592 1.19049 0.94689 0.93388 0.94272 1.21710 0.93705 1.04766 1.37660 0.92307 1.25971 0.96321 1.01033 0.96593 1.70089 1.11042 1.30305 1.46083 0.85544 0.78562 0.78287 0.78914 1.19304 1.20868 1.19159 1.22466 0.84506 0.82097 0.74273 1.90645 1.72773 1.22744 1.58164 1.84889 1.37766 1.40534 1.67661 0.91538 0.92236 0.89764 0.85897 0.87504 0.92234 0.90334 0.93175 0.91973 0.99426 0.99000 0.92866 0.72099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 9.19 71.98 0.66 -1.70 16 2 C -0.11 -2.47 5.91 -10.79 -0.06 -2.53 16 3 H 0.11 2.61 7.70 -2.38 -0.02 2.59 16 4 C -0.13 -2.90 9.53 30.62 0.29 -2.61 16 5 C -0.16 -4.45 2.36 -52.90 -0.12 -4.58 16 6 C -0.07 -2.24 4.43 30.59 0.14 -2.11 16 7 C -0.09 -3.81 3.74 30.60 0.11 -3.70 16 8 C 0.02 1.23 4.97 29.85 0.15 1.37 16 9 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 10 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 11 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 12 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 13 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 15 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 17 C 0.52 15.95 7.67 71.24 0.55 16.49 16 18 O -0.55 -18.66 17.05 21.95 0.37 -18.28 16 19 O -0.50 -14.08 9.74 -51.38 -0.50 -14.58 16 20 H 0.07 1.23 7.56 -2.38 -0.02 1.22 16 21 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.12 2.42 7.99 -2.39 -0.02 2.40 16 24 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.08 2.48 7.54 -2.39 -0.02 2.46 16 27 H 0.05 2.07 8.00 -2.39 -0.02 2.05 16 28 H 0.06 2.59 6.00 -2.39 -0.01 2.57 16 29 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 30 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 31 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 32 H 0.42 7.87 9.10 -74.05 -0.67 7.20 16 Total: -1.00 -69.40 272.12 5.02 -64.38 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 0.43 Total: 8.91 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 2.40 Total: -29.96 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.28 Total: -57.12 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.13 Total: -32.86 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -69.40 5.02 -64.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703310220.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.360 kcal (2) G-P(sol) polarization free energy of solvation -69.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds