Wall clock time and date at job start Mon Mar 30 2020 02:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 115.56118 * 2 1 4 4 C 1.53077 * 117.51252 * 145.70010 * 2 1 3 5 5 C 1.52997 * 59.98297 * 107.47540 * 4 2 1 6 6 C 1.53002 * 117.50143 * 252.49725 * 5 4 2 7 7 C 1.52999 * 109.46986 * 155.28953 * 6 5 4 8 8 C 1.52999 * 109.46877 * 178.11560 * 7 6 5 9 9 C 1.50706 * 109.47288 * 179.97438 * 8 7 6 10 10 H 1.07998 * 119.99861 * 359.97438 * 9 8 7 11 11 C 1.37872 * 120.00163 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99867 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00088 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47279 * 59.99622 * 13 11 9 15 15 H 1.48503 * 109.47238 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46994 * 299.99747 * 13 11 9 17 17 C 1.50706 * 117.49772 * 107.49991 * 5 4 2 18 18 O 1.20828 * 119.99955 * 259.82519 * 17 5 4 19 19 O 1.34221 * 120.00221 * 79.81993 * 17 5 4 20 20 H 1.08998 * 109.47465 * 205.69408 * 1 2 3 21 21 H 1.09000 * 109.47365 * 325.69141 * 1 2 3 22 22 H 1.09002 * 109.47561 * 85.68879 * 1 2 3 23 23 H 1.08998 * 117.51229 * 0.02562 * 4 2 1 24 24 H 1.08998 * 117.50965 * 214.95483 * 4 2 1 25 25 H 1.08993 * 109.46900 * 35.28904 * 6 5 4 26 26 H 1.09003 * 109.46821 * 275.28621 * 6 5 4 27 27 H 1.08998 * 109.47211 * 298.11080 * 7 6 5 28 28 H 1.08997 * 109.47526 * 58.11196 * 7 6 5 29 29 H 1.09004 * 109.47231 * 299.99649 * 8 7 6 30 30 H 1.09007 * 109.47341 * 59.99628 * 8 7 6 31 31 H 0.97003 * 120.00093 * 180.02562 * 12 11 9 32 32 H 0.96700 * 117.00569 * 180.02562 * 19 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 0.7651 5 6 2.2364 -1.1211 -0.7649 6 6 1.3587 -2.1563 -1.4713 7 6 0.9968 -1.6494 -2.8688 8 6 0.1583 -2.7048 -3.5927 9 6 -0.1988 -2.2054 -4.9690 10 1 0.1381 -1.2324 -5.2947 11 6 -0.9566 -2.9903 -5.8121 12 7 -1.3673 -4.1750 -5.4153 13 14 -1.3986 -2.3716 -7.5182 14 1 -0.1556 -2.1137 -8.2888 15 1 -2.2125 -3.3959 -8.2208 16 1 -2.1787 -1.1133 -7.4017 17 6 3.5290 -0.7811 -1.4612 18 8 3.7027 0.3297 -1.9038 19 8 4.4872 -1.7121 -1.5896 20 1 -0.3634 -0.9260 0.4455 21 1 -0.3634 0.8489 0.5792 22 1 -0.3634 0.0773 -1.0247 23 1 1.6123 -1.8596 1.2680 24 1 3.1724 -0.8759 1.2680 25 1 0.4474 -2.3140 -0.8947 26 1 1.9029 -3.0970 -1.5557 27 1 0.4237 -0.7262 -2.7833 28 1 1.9091 -1.4597 -3.4342 29 1 0.7314 -3.6281 -3.6782 30 1 -0.7541 -2.8946 -3.0273 31 1 -1.9002 -4.7274 -6.0086 32 1 5.2990 -1.4471 -2.0434 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703310228.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:59 Heat of formation + Delta-G solvation = -94.987506 kcal Electronic energy + Delta-G solvation = -14129.421208 eV Core-core repulsion = 11668.863470 eV Total energy + Delta-G solvation = -2460.557739 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.47067 -37.86658 -35.88297 -34.01131 -31.82770 -29.02216 -27.36159 -24.49725 -23.22877 -21.35838 -20.24450 -18.98814 -17.69402 -16.74367 -16.09887 -15.56558 -14.46700 -14.45408 -14.02358 -13.69166 -12.81550 -12.60616 -12.35817 -12.23139 -11.67565 -11.52491 -11.39881 -11.25993 -10.84747 -10.77041 -10.70849 -10.38814 -10.00694 -9.77861 -9.51830 -9.23960 -8.99019 -8.31638 -5.97085 -3.99035 2.32864 3.07721 3.35669 3.39438 3.42807 3.67502 4.48127 4.66011 4.72079 4.93494 5.34835 5.38364 5.38881 5.67199 5.72253 5.82096 5.89512 5.98066 6.13141 6.15025 6.39288 6.44441 6.58584 6.74434 6.91858 7.15829 7.70499 7.84816 8.03223 8.05456 8.46761 9.07831 9.64816 11.14209 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.036371 B = 0.007125 C = 0.006696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.661251 B = 3928.843495 C = 4180.850324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.115 4.115 3 H 0.109 0.891 4 C -0.157 4.157 5 C -0.126 4.126 6 C -0.077 4.077 7 C -0.109 4.109 8 C 0.023 3.977 9 C -0.520 4.520 10 H 0.053 0.947 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.521 3.479 18 O -0.515 6.515 19 O -0.510 6.510 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.074 0.926 23 H 0.108 0.892 24 H 0.095 0.905 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.015 0.985 30 H 0.017 0.983 31 H 0.260 0.740 32 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.196 5.034 11.870 14.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.134 4.134 3 H 0.128 0.872 4 C -0.194 4.194 5 C -0.127 4.127 6 C -0.115 4.115 7 C -0.147 4.147 8 C -0.014 4.014 9 C -0.558 4.558 10 H 0.072 0.928 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C 0.364 3.636 18 O -0.403 6.403 19 O -0.321 6.321 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.092 0.908 23 H 0.127 0.873 24 H 0.113 0.887 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 6.775 5.064 11.889 14.591 hybrid contribution 0.411 0.430 -1.394 1.515 sum 7.186 5.493 10.495 13.855 Atomic orbital electron populations 1.21441 0.91562 1.01944 1.03287 1.22499 0.96245 0.94153 1.00471 0.87246 1.23312 1.02819 1.01868 0.91361 1.21208 0.92876 1.04374 0.94228 1.21283 0.97343 0.95437 0.97394 1.21650 0.99929 1.00446 0.92629 1.19085 0.94444 0.93363 0.94548 1.21238 1.32461 1.02637 0.99511 0.92827 1.25013 0.96033 0.94947 0.98435 1.69955 1.37018 1.10035 1.36585 0.86673 0.78478 0.78474 0.84475 1.20290 1.21270 1.20237 1.22318 0.83912 0.81618 0.75777 1.90691 1.79884 1.23587 1.46113 1.84551 1.28810 1.45318 1.73421 0.91983 0.92018 0.90756 0.87343 0.88661 0.90553 0.91048 0.92933 0.93994 0.96623 0.96509 0.92994 0.73549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 8.97 37.16 0.33 -1.20 16 2 C -0.12 -1.51 5.93 -90.58 -0.54 -2.05 16 3 H 0.11 1.44 8.00 -51.93 -0.42 1.02 16 4 C -0.16 -1.81 9.60 -26.69 -0.26 -2.06 16 5 C -0.13 -1.88 2.08 -155.66 -0.32 -2.20 16 6 C -0.08 -1.32 4.65 -26.73 -0.12 -1.44 16 7 C -0.11 -2.33 4.99 -26.73 -0.13 -2.46 16 8 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 9 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 10 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 11 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 12 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 13 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 C 0.52 8.35 6.66 36.01 0.24 8.59 16 18 O -0.51 -9.52 17.46 -18.75 -0.33 -9.84 16 19 O -0.51 -6.81 13.42 -39.23 -0.53 -7.34 16 20 H 0.06 0.71 7.23 -51.93 -0.38 0.33 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.07 1.05 6.96 -51.93 -0.36 0.69 16 23 H 0.11 1.10 8.05 -51.93 -0.42 0.68 16 24 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.08 1.21 6.70 -51.93 -0.35 0.86 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.05 1.12 6.96 -51.93 -0.36 0.75 16 28 H 0.04 0.93 7.47 -51.93 -0.39 0.54 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.41 3.53 9.10 45.56 0.41 3.95 16 LS Contribution 274.69 15.07 4.14 4.14 Total: -1.00 -33.07 274.69 -6.26 -39.33 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -3.91 Total: -0.61 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -1.35 Total: -16.26 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.85 Total: -17.18 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.07 -6.26 -39.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703310228.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.659 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds