Wall clock time and date at job start Mon Mar 30 2020 02:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47313 * 2 1 4 4 C 1.53008 * 109.46655 * 240.00456 * 2 1 3 5 5 C 1.50694 * 109.46878 * 65.77283 * 4 2 1 6 6 H 1.07993 * 120.00835 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99545 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00207 * 0.27040 * 7 5 4 9 9 Si 1.86798 * 120.00009 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47063 * 59.99565 * 9 7 5 11 11 H 1.48494 * 109.47308 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47103 * 299.99945 * 9 7 5 13 13 C 1.53001 * 109.47140 * 120.00421 * 2 1 3 14 14 C 1.50697 * 115.54897 * 269.13407 * 13 2 1 15 15 O 1.20826 * 119.99741 * 113.51611 * 14 13 2 16 16 O 1.34234 * 119.99920 * 293.51306 * 14 13 2 17 17 C 1.53002 * 117.49509 * 123.43022 * 13 2 1 18 18 C 1.52996 * 117.49797 * 54.80614 * 13 2 1 19 19 H 1.08997 * 117.50068 * 359.97438 * 18 13 2 20 20 C 1.52999 * 117.49750 * 214.99879 * 18 13 2 21 21 H 1.08993 * 109.47449 * 59.99455 * 1 2 3 22 22 H 1.08998 * 109.47313 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46808 * 299.99424 * 1 2 3 24 24 H 1.08994 * 109.46806 * 305.77074 * 4 2 1 25 25 H 1.09001 * 109.46524 * 185.77347 * 4 2 1 26 26 H 0.97003 * 119.99708 * 359.72265 * 8 7 5 27 27 H 0.96691 * 116.99656 * 180.02562 * 16 14 13 28 28 H 1.08994 * 117.50211 * 359.97438 * 17 13 2 29 29 H 1.08999 * 117.49865 * 145.02065 * 17 13 2 30 30 H 1.09003 * 109.47098 * 60.00129 * 20 18 13 31 31 H 1.09008 * 109.47252 * 180.02562 * 20 18 13 32 32 H 1.08996 * 109.47448 * 300.00274 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6576 0.0670 -2.4755 6 1 1.1058 0.9898 -2.3741 7 6 2.0114 -0.3905 -3.7272 8 7 2.6779 -1.5174 -3.8512 9 14 1.5369 0.5861 -5.2472 10 1 2.1436 1.9397 -5.1751 11 1 2.0319 -0.1137 -6.4597 12 1 0.0586 0.7093 -5.3149 13 6 2.0400 -0.7213 1.2492 14 6 2.2760 0.1529 2.4537 15 8 1.5891 0.0221 3.4391 16 8 3.2494 1.0770 2.4319 17 6 2.9804 -1.9106 1.0437 18 6 1.5380 -2.1452 1.4971 19 1 0.8441 -2.5679 0.7706 20 6 1.3141 -2.5725 2.9491 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.5946 -1.7146 -1.3026 25 1 3.1250 -0.8116 -1.1992 26 1 2.9241 -2.0247 -3.0619 27 1 3.3630 1.6137 3.2282 28 1 3.2354 -2.1794 0.0186 29 1 3.7701 -2.0608 1.7798 30 1 0.5712 -1.9210 3.4091 31 1 0.9596 -3.6030 2.9741 32 1 2.2525 -2.4981 3.4986 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703315090.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:04 Heat of formation + Delta-G solvation = -89.860370 kcal Electronic energy + Delta-G solvation = -14600.331071 eV Core-core repulsion = 12139.995662 eV Total energy + Delta-G solvation = -2460.335409 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.51960 -37.94862 -35.88123 -33.94889 -31.80128 -28.30151 -26.84589 -24.93124 -23.44741 -21.47373 -20.42498 -18.90969 -17.58884 -16.85774 -15.72444 -15.61335 -14.52772 -13.79805 -13.66108 -13.27394 -13.15517 -12.87441 -12.17595 -12.10474 -11.84608 -11.43298 -11.24573 -11.04619 -10.97063 -10.78552 -10.35385 -10.20332 -10.11340 -9.80362 -9.40828 -9.22193 -8.51619 -8.31884 -6.35484 -4.04142 2.38429 3.19261 3.44471 3.45901 3.64506 3.94125 4.54722 4.86168 5.02213 5.22487 5.41149 5.50620 5.53401 5.86396 5.94829 5.99558 6.06694 6.15846 6.22224 6.26588 6.45225 6.54678 6.68419 6.74343 6.90753 6.95874 7.33324 7.49738 8.12186 8.21303 8.46152 8.88763 9.66579 11.04978 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.043403 B = 0.008263 C = 0.007865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.969259 B = 3387.639410 C = 3559.336371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.038 4.038 3 H 0.069 0.931 4 C 0.017 3.983 5 C -0.597 4.597 6 H 0.050 0.950 7 C 0.015 3.985 8 N -0.913 5.913 9 Si 1.066 2.934 10 H -0.288 1.288 11 H -0.283 1.283 12 H -0.288 1.288 13 C -0.126 4.126 14 C 0.520 3.480 15 O -0.518 6.518 16 O -0.509 6.509 17 C -0.154 4.154 18 C -0.119 4.119 19 H 0.118 0.882 20 C -0.121 4.121 21 H 0.067 0.933 22 H 0.049 0.951 23 H 0.032 0.968 24 H 0.011 0.989 25 H 0.014 0.986 26 H 0.268 0.732 27 H 0.402 0.598 28 H 0.121 0.879 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.590 0.993 10.883 10.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.057 4.057 3 H 0.087 0.913 4 C -0.020 4.020 5 C -0.635 4.635 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.550 5.550 9 Si 0.895 3.105 10 H -0.215 1.215 11 H -0.208 1.208 12 H -0.215 1.215 13 C -0.127 4.127 14 C 0.364 3.636 15 O -0.407 6.407 16 O -0.319 6.319 17 C -0.191 4.191 18 C -0.137 4.137 19 H 0.136 0.864 20 C -0.178 4.178 21 H 0.086 0.914 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.029 0.971 25 H 0.032 0.968 26 H 0.078 0.922 27 H 0.260 0.740 28 H 0.139 0.861 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.732 0.731 9.141 9.200 hybrid contribution 0.034 0.491 2.263 2.316 sum -0.698 1.222 11.405 11.491 Atomic orbital electron populations 1.21725 0.95279 1.01306 1.00555 1.20623 0.95328 0.98927 0.90794 0.91290 1.19381 0.95641 0.95503 0.91466 1.22020 1.39474 1.09764 0.92283 0.93204 1.25797 0.94571 0.97193 1.01292 1.70796 1.36605 1.14073 1.33486 0.83575 0.76078 0.75168 0.75689 1.21491 1.20819 1.21498 1.21357 1.07881 0.89089 0.94419 1.22603 0.75795 0.77613 0.87616 1.90636 1.46861 1.68179 1.35009 1.84633 1.53197 1.47814 1.46306 1.23503 0.92771 0.98447 1.04330 1.22520 0.97934 0.94526 0.98701 0.86379 1.21461 1.02158 1.00798 0.93427 0.91400 0.93219 0.94849 0.97128 0.96763 0.92184 0.74019 0.86064 0.89129 0.90707 0.92525 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.79 37.16 0.33 -2.22 16 2 C -0.04 -0.79 2.40 -90.62 -0.22 -1.00 16 3 H 0.07 1.49 8.03 -51.93 -0.42 1.07 16 4 C 0.02 0.41 2.34 -27.88 -0.07 0.34 16 5 C -0.60 -16.47 8.41 -34.44 -0.29 -16.76 16 6 H 0.05 1.36 7.11 -52.49 -0.37 0.99 16 7 C 0.02 0.43 5.46 -17.82 -0.10 0.33 16 8 N -0.91 -27.38 13.65 55.43 0.76 -26.63 16 9 Si 1.07 25.06 29.90 -169.99 -5.08 19.98 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 13 C -0.13 -2.26 2.09 -155.66 -0.33 -2.59 16 14 C 0.52 8.80 7.28 36.00 0.26 9.06 16 15 O -0.52 -9.25 15.00 -18.75 -0.28 -9.53 16 16 O -0.51 -7.39 13.42 -39.27 -0.53 -7.92 16 17 C -0.15 -2.56 8.85 -26.73 -0.24 -2.80 16 18 C -0.12 -1.92 5.33 -90.62 -0.48 -2.41 16 19 H 0.12 1.95 7.15 -51.93 -0.37 1.58 16 20 C -0.12 -1.74 8.59 37.16 0.32 -1.42 16 21 H 0.07 1.39 7.00 -51.93 -0.36 1.02 16 22 H 0.05 0.92 6.98 -51.93 -0.36 0.56 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 24 H 0.01 0.27 7.53 -51.93 -0.39 -0.13 16 25 H 0.01 0.36 6.70 -51.93 -0.35 0.02 16 26 H 0.27 7.92 7.22 -40.82 -0.29 7.63 16 27 H 0.40 3.66 9.10 45.56 0.41 4.07 16 28 H 0.12 2.21 5.80 -51.93 -0.30 1.91 16 29 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 30 H 0.07 1.15 6.79 -51.93 -0.35 0.80 16 31 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.05 0.68 7.88 -51.93 -0.41 0.27 16 LS Contribution 264.47 15.07 3.99 3.99 Total: -1.00 -31.29 264.47 -5.58 -36.88 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -3.63 Total: 2.70 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -0.81 Total: -19.46 kcal Atomic # 7 Polarization: -27.38 SS G_CDS: 0.76 Total: -26.63 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.81 Total: -17.45 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.08 Total: 19.98 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.29 -5.58 -36.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703315090.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.983 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds