Wall clock time and date at job start Mon Mar 30 2020 02:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47313 * 2 1 4 4 C 1.53008 * 109.46655 * 240.00456 * 2 1 3 5 5 C 1.50694 * 109.46878 * 65.77283 * 4 2 1 6 6 H 1.07993 * 120.00835 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99545 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00207 * 0.27040 * 7 5 4 9 9 Si 1.86798 * 120.00009 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47063 * 59.99565 * 9 7 5 11 11 H 1.48494 * 109.47308 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47103 * 299.99945 * 9 7 5 13 13 C 1.53001 * 109.47140 * 120.00421 * 2 1 3 14 14 C 1.50697 * 115.54897 * 269.13407 * 13 2 1 15 15 O 1.20826 * 119.99741 * 113.51611 * 14 13 2 16 16 O 1.34234 * 119.99920 * 293.51306 * 14 13 2 17 17 C 1.53002 * 117.49509 * 123.43022 * 13 2 1 18 18 C 1.52996 * 117.49797 * 54.80614 * 13 2 1 19 19 H 1.08997 * 117.50068 * 359.97438 * 18 13 2 20 20 C 1.52999 * 117.49750 * 214.99879 * 18 13 2 21 21 H 1.08993 * 109.47449 * 59.99455 * 1 2 3 22 22 H 1.08998 * 109.47313 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46808 * 299.99424 * 1 2 3 24 24 H 1.08994 * 109.46806 * 305.77074 * 4 2 1 25 25 H 1.09001 * 109.46524 * 185.77347 * 4 2 1 26 26 H 0.97003 * 119.99708 * 359.72265 * 8 7 5 27 27 H 0.96691 * 116.99656 * 180.02562 * 16 14 13 28 28 H 1.08994 * 117.50211 * 359.97438 * 17 13 2 29 29 H 1.08999 * 117.49865 * 145.02065 * 17 13 2 30 30 H 1.09003 * 109.47098 * 60.00129 * 20 18 13 31 31 H 1.09008 * 109.47252 * 180.02562 * 20 18 13 32 32 H 1.08996 * 109.47448 * 300.00274 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.6576 0.0670 -2.4755 6 1 1.1058 0.9898 -2.3741 7 6 2.0114 -0.3905 -3.7272 8 7 2.6779 -1.5174 -3.8512 9 14 1.5369 0.5861 -5.2472 10 1 2.1436 1.9397 -5.1751 11 1 2.0319 -0.1137 -6.4597 12 1 0.0586 0.7093 -5.3149 13 6 2.0400 -0.7213 1.2492 14 6 2.2760 0.1529 2.4537 15 8 1.5891 0.0221 3.4391 16 8 3.2494 1.0770 2.4319 17 6 2.9804 -1.9106 1.0437 18 6 1.5380 -2.1452 1.4971 19 1 0.8441 -2.5679 0.7706 20 6 1.3141 -2.5725 2.9491 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.5946 -1.7146 -1.3026 25 1 3.1250 -0.8116 -1.1992 26 1 2.9241 -2.0247 -3.0619 27 1 3.3630 1.6137 3.2282 28 1 3.2354 -2.1794 0.0186 29 1 3.7701 -2.0608 1.7798 30 1 0.5712 -1.9210 3.4091 31 1 0.9596 -3.6030 2.9741 32 1 2.2525 -2.4981 3.4986 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703315090.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:04 Heat of formation + Delta-G solvation = -109.184008 kcal Electronic energy + Delta-G solvation = -14601.169007 eV Core-core repulsion = 12139.995662 eV Total energy + Delta-G solvation = -2461.173345 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.84954 -39.34287 -37.15586 -35.81425 -33.64570 -29.56455 -28.75716 -26.29709 -25.44767 -22.93796 -21.87258 -20.34551 -18.90616 -18.84943 -17.22615 -16.98912 -15.89653 -15.66170 -15.29941 -14.88427 -14.60682 -14.06989 -13.84871 -13.68664 -13.35917 -13.06102 -12.73467 -12.60356 -12.52786 -12.28686 -12.03932 -11.94801 -11.76480 -11.32138 -10.89234 -10.76766 -10.54561 -10.46034 -8.61560 -6.30773 1.06727 1.54580 1.62077 1.81020 1.99029 2.58824 2.60019 3.21911 3.51469 3.68460 3.82159 4.20508 4.30199 4.32407 4.48284 4.56157 4.73871 4.76623 4.91649 4.96771 5.01423 5.08629 5.17743 5.29100 5.32609 5.37264 5.54506 5.60110 6.07521 6.25527 6.65905 6.98041 7.48229 8.79711 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.043403 B = 0.008263 C = 0.007865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.969259 B = 3387.639410 C = 3559.336371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.032 4.032 3 H 0.057 0.943 4 C 0.026 3.974 5 C -0.610 4.610 6 H 0.049 0.951 7 C -0.037 4.037 8 N -0.939 5.939 9 Si 1.111 2.889 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.271 1.271 13 C -0.143 4.143 14 C 0.528 3.472 15 O -0.527 6.527 16 O -0.509 6.509 17 C -0.152 4.152 18 C -0.108 4.108 19 H 0.111 0.889 20 C -0.114 4.114 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.051 0.949 24 H -0.002 1.002 25 H -0.003 1.003 26 H 0.257 0.743 27 H 0.427 0.573 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.996 1.554 11.784 11.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.051 4.051 3 H 0.075 0.925 4 C -0.011 4.011 5 C -0.647 4.647 6 H 0.068 0.932 7 C -0.235 4.235 8 N -0.577 5.577 9 Si 0.934 3.066 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.196 1.196 13 C -0.144 4.144 14 C 0.371 3.629 15 O -0.417 6.417 16 O -0.323 6.323 17 C -0.188 4.188 18 C -0.126 4.126 19 H 0.129 0.871 20 C -0.171 4.171 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.016 0.984 25 H 0.015 0.985 26 H 0.066 0.934 27 H 0.288 0.712 28 H 0.117 0.883 29 H 0.131 0.869 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.133 1.314 10.080 10.228 hybrid contribution 0.199 0.337 2.019 2.057 sum -0.933 1.651 12.099 12.247 Atomic orbital electron populations 1.21645 0.94282 1.01617 1.00685 1.20400 0.96136 0.97981 0.90574 0.92454 1.19222 0.94409 0.94878 0.92561 1.22443 1.38823 1.09890 0.93593 0.93235 1.27235 0.94029 0.97391 1.04812 1.70916 1.38484 1.15283 1.33019 0.82996 0.76934 0.74515 0.72202 1.19720 1.21083 1.19582 1.21231 1.09248 0.89873 0.94057 1.22201 0.76049 0.77732 0.86908 1.90636 1.47341 1.68566 1.35187 1.84570 1.52153 1.47535 1.48044 1.23460 0.93822 0.97778 1.03768 1.22586 0.97213 0.92914 0.99911 0.87060 1.21419 1.02211 1.01857 0.91571 0.92919 0.92820 0.92964 0.98391 0.98520 0.93353 0.71156 0.88300 0.86916 0.91519 0.90309 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 8.79 71.98 0.63 -4.11 16 2 C -0.03 -1.32 2.40 -10.79 -0.03 -1.35 16 3 H 0.06 2.46 8.03 -2.39 -0.02 2.44 16 4 C 0.03 1.30 2.34 29.85 0.07 1.37 16 5 C -0.61 -33.90 8.41 25.60 0.22 -33.69 16 6 H 0.05 2.70 7.11 -2.91 -0.02 2.68 16 7 C -0.04 -2.12 5.46 84.66 0.46 -1.66 16 8 N -0.94 -57.24 13.65 21.45 0.29 -56.94 16 9 Si 1.11 50.00 29.90 68.60 2.05 52.05 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 13 C -0.14 -4.97 2.09 -52.93 -0.11 -5.08 16 14 C 0.53 16.80 7.28 71.24 0.52 17.32 16 15 O -0.53 -17.60 15.00 21.96 0.33 -17.27 16 16 O -0.51 -13.67 13.42 -51.46 -0.69 -14.36 16 17 C -0.15 -4.95 8.85 30.60 0.27 -4.68 16 18 C -0.11 -3.36 5.33 -10.79 -0.06 -3.42 16 19 H 0.11 3.60 7.15 -2.39 -0.02 3.58 16 20 C -0.11 -2.97 8.59 71.98 0.62 -2.36 16 21 H 0.05 2.13 7.00 -2.39 -0.02 2.11 16 22 H 0.05 1.96 6.98 -2.39 -0.02 1.94 16 23 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 24 H 0.00 -0.11 7.53 -2.39 -0.02 -0.13 16 25 H 0.00 -0.18 6.70 -2.39 -0.02 -0.19 16 26 H 0.26 15.69 7.22 -92.71 -0.67 15.02 16 27 H 0.43 6.59 9.10 -74.06 -0.67 5.91 16 28 H 0.10 3.69 5.80 -2.39 -0.01 3.68 16 29 H 0.11 3.14 8.05 -2.39 -0.02 3.12 16 30 H 0.07 1.89 6.79 -2.39 -0.02 1.87 16 31 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.05 1.33 7.88 -2.39 -0.02 1.31 16 Total: -1.00 -66.02 264.47 5.12 -60.90 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.55 Total: 13.28 kcal Atomic # 6 Polarization: -40.25 SS G_CDS: 2.59 Total: -37.65 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.29 Total: -56.94 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.36 Total: -31.63 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.05 Total: 52.05 kcal Total: -66.02 5.12 -60.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703315090.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.287 kcal (2) G-P(sol) polarization free energy of solvation -66.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds