Wall clock time and date at job start Mon Mar 30 2020 02:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 115.55668 * 2 1 4 4 C 1.52994 * 117.49709 * 214.30966 * 2 1 3 5 5 C 1.53001 * 117.49759 * 145.68416 * 2 1 3 6 6 C 1.52997 * 117.49919 * 214.98246 * 5 2 1 7 7 C 1.53001 * 109.47236 * 185.59716 * 6 5 2 8 8 C 1.50695 * 109.47082 * 174.78925 * 7 6 5 9 9 H 1.08002 * 120.00256 * 0.27466 * 8 7 6 10 10 C 1.37877 * 119.99777 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00273 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99869 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46986 * 89.99870 * 12 10 8 14 14 H 1.48504 * 109.46982 * 209.99871 * 12 10 8 15 15 H 1.48505 * 109.46993 * 329.99900 * 12 10 8 16 16 C 1.50697 * 117.49762 * 359.97438 * 5 2 1 17 17 O 1.20827 * 120.00598 * 326.84536 * 16 5 2 18 18 O 1.34228 * 119.99919 * 146.84904 * 16 5 2 19 19 H 1.09000 * 109.47260 * 274.31026 * 1 2 3 20 20 H 1.08999 * 109.46945 * 34.30927 * 1 2 3 21 21 H 1.09003 * 109.47059 * 154.31081 * 1 2 3 22 22 H 1.09001 * 109.46881 * 205.68266 * 3 2 1 23 23 H 1.09000 * 109.47849 * 325.68720 * 3 2 1 24 24 H 1.09004 * 109.47225 * 85.68836 * 3 2 1 25 25 H 1.09002 * 117.49289 * 145.02723 * 4 2 1 26 26 H 1.08993 * 117.50463 * 359.97438 * 4 2 1 27 27 H 1.08997 * 109.47435 * 65.59208 * 6 5 2 28 28 H 1.09002 * 109.46937 * 305.59466 * 6 5 2 29 29 H 1.09004 * 109.46979 * 54.79042 * 7 6 5 30 30 H 1.09004 * 109.46832 * 294.78968 * 7 6 5 31 31 H 0.96995 * 119.99699 * 179.97438 * 11 10 8 32 32 H 0.96698 * 117.00483 * 179.97438 * 18 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2365 -1.1210 -0.7650 5 6 2.2365 -1.1209 0.7651 6 6 3.5490 -0.7758 1.4716 7 6 4.1642 -2.0493 2.0552 8 6 5.5168 -1.7319 2.6388 9 1 5.8975 -0.7219 2.6016 10 6 6.2657 -2.7297 3.2258 11 7 5.7994 -3.9584 3.2769 12 14 7.9422 -2.3360 3.9499 13 1 7.7878 -1.9544 5.3767 14 1 8.8179 -3.5311 3.8491 15 1 8.5534 -1.2097 3.1996 16 6 1.3720 -2.1401 1.4615 17 8 0.3081 -1.8109 1.9301 18 8 1.7840 -3.4137 1.5612 19 1 -0.3634 0.0772 1.0248 20 1 -0.3633 0.8489 -0.5793 21 1 -0.3633 -0.9261 -0.4455 22 1 3.1824 1.3085 -0.4454 23 1 1.5812 2.0743 -0.5793 24 1 2.2772 1.7414 1.0248 25 1 3.1716 -0.8751 -1.2681 26 1 1.6113 -1.8587 -1.2679 27 1 3.3534 -0.0656 2.2750 28 1 4.2414 -0.3329 0.7557 29 1 4.2744 -2.7939 1.2667 30 1 3.5140 -2.4416 2.8372 31 1 6.3265 -4.6603 3.6895 32 1 1.1956 -4.0311 2.0169 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705632290.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:11 Heat of formation + Delta-G solvation = -88.529919 kcal Electronic energy + Delta-G solvation = -14512.562000 eV Core-core repulsion = 12052.284283 eV Total energy + Delta-G solvation = -2460.277717 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.33133 -37.77824 -35.52493 -33.47790 -31.20136 -28.78275 -27.38996 -25.43210 -23.68835 -21.54372 -19.92015 -18.33753 -17.44584 -16.30311 -15.45698 -15.15304 -14.42420 -13.99648 -13.80994 -13.60061 -12.99793 -12.45723 -12.36932 -12.07662 -11.89472 -11.56510 -11.09623 -11.06526 -10.98740 -10.85713 -10.62324 -10.17342 -10.07734 -9.75638 -9.31526 -9.11507 -8.87836 -8.30711 -5.96115 -3.98989 2.68117 3.33196 3.39411 3.42193 3.44372 3.93885 4.47285 4.82447 4.95504 5.13558 5.24163 5.39120 5.74004 5.79360 5.84727 5.97295 6.05838 6.07654 6.12462 6.23501 6.34931 6.48668 6.55875 6.66977 7.03325 7.05642 7.73789 7.87640 8.05706 8.44371 8.47180 9.08612 9.64384 11.14536 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.040467 B = 0.008490 C = 0.007483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.761147 B = 3297.174132 C = 3740.922298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.104 4.104 3 C -0.112 4.112 4 C -0.149 4.149 5 C -0.117 4.117 6 C -0.070 4.070 7 C 0.026 3.974 8 C -0.523 4.523 9 H 0.054 0.946 10 C 0.058 3.942 11 N -0.891 5.891 12 Si 0.890 3.110 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C 0.526 3.474 17 O -0.529 6.529 18 O -0.491 6.491 19 H 0.076 0.924 20 H 0.054 0.946 21 H 0.049 0.951 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.106 0.894 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.026 0.974 30 H 0.017 0.983 31 H 0.259 0.741 32 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 5.559 -7.021 12.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.104 4.104 3 C -0.169 4.169 4 C -0.186 4.186 5 C -0.118 4.118 6 C -0.108 4.108 7 C -0.011 4.011 8 C -0.562 4.562 9 H 0.072 0.928 10 C -0.143 4.143 11 N -0.530 5.530 12 Si 0.718 3.282 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C 0.370 3.630 17 O -0.419 6.419 18 O -0.300 6.300 19 H 0.095 0.905 20 H 0.073 0.927 21 H 0.068 0.932 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.125 0.875 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -8.002 5.738 -7.042 12.106 hybrid contribution 0.601 -0.465 0.826 1.123 sum -7.401 5.273 -6.216 11.010 Atomic orbital electron populations 1.21438 0.91666 1.00922 1.03082 1.21734 0.95071 0.91443 1.02114 1.21329 0.99994 0.93216 1.02331 1.23411 1.02756 1.00511 0.91935 1.21410 0.99112 0.96595 0.94642 1.21295 0.89648 1.01455 0.98392 1.19130 0.94903 0.90982 0.96089 1.21250 1.02493 0.94833 1.37581 0.92768 1.25007 0.98036 0.95115 0.96184 1.69984 1.37745 1.00628 1.44616 0.86638 0.84283 0.77807 0.79517 1.20748 1.21240 1.19905 1.22264 0.83359 0.81761 0.75621 1.90614 1.24098 1.80668 1.46496 1.84775 1.52502 1.20182 1.72530 0.90548 0.92678 0.93156 0.91909 0.92205 0.91751 0.87540 0.88864 0.92529 0.91562 0.95590 0.96478 0.93116 0.74223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 8.27 37.16 0.31 -1.28 16 2 C -0.10 -1.53 2.69 -154.51 -0.42 -1.95 16 3 C -0.11 -1.43 8.85 37.16 0.33 -1.10 16 4 C -0.15 -2.24 9.17 -26.73 -0.25 -2.48 16 5 C -0.12 -2.11 2.31 -155.66 -0.36 -2.47 16 6 C -0.07 -1.46 4.37 -26.73 -0.12 -1.58 16 7 C 0.03 0.67 3.68 -27.88 -0.10 0.57 16 8 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 9 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -26.80 13.29 55.43 0.74 -26.07 16 12 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 16 C 0.53 10.09 6.57 36.00 0.24 10.32 16 17 O -0.53 -10.55 15.06 -18.75 -0.28 -10.83 16 18 O -0.49 -9.08 11.47 -39.25 -0.45 -9.53 16 19 H 0.08 1.19 6.80 -51.93 -0.35 0.84 16 20 H 0.05 0.63 7.92 -51.93 -0.41 0.22 16 21 H 0.05 0.70 7.89 -51.93 -0.41 0.29 16 22 H 0.06 0.78 7.57 -51.93 -0.39 0.38 16 23 H 0.06 0.63 7.92 -51.93 -0.41 0.22 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.11 1.49 7.99 -51.93 -0.41 1.08 16 26 H 0.09 1.30 8.05 -51.93 -0.42 0.88 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.07 1.30 7.54 -51.93 -0.39 0.91 16 29 H 0.03 0.72 7.97 -51.93 -0.41 0.30 16 30 H 0.02 0.47 6.89 -51.93 -0.36 0.12 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.40 5.45 9.10 45.56 0.41 5.87 16 LS Contribution 269.17 15.07 4.06 4.06 Total: -1.00 -32.20 269.17 -5.69 -37.89 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -3.95 Total: 1.35 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -0.78 Total: -13.54 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.07 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.73 Total: -20.36 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.20 -5.69 -37.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705632290.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.644 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds