Wall clock time and date at job start Mon Mar 30 2020 02:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99882 * 2 1 4 4 H 1.48503 * 109.46911 * 269.99697 * 3 2 1 5 5 H 1.48496 * 109.47314 * 30.00005 * 3 2 1 6 6 H 1.48496 * 109.47014 * 150.00087 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99837 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00059 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47316 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00439 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99762 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00170 * 180.02562 * 11 10 9 14 14 C 1.53001 * 109.47140 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47031 * 179.97438 * 14 13 11 16 16 C 1.53515 * 114.16965 * 184.99981 * 15 14 13 17 17 N 1.47481 * 87.93334 * 220.32733 * 16 15 14 18 18 C 1.47488 * 87.83530 * 27.00963 * 17 16 15 19 19 H 0.97006 * 120.00492 * 0.02562 * 1 2 3 20 20 H 1.09006 * 109.47062 * 59.99880 * 9 7 2 21 21 H 1.09000 * 109.47242 * 299.99887 * 9 7 2 22 22 H 0.97004 * 119.99645 * 0.02562 * 10 9 7 23 23 H 1.08994 * 109.47034 * 60.00028 * 13 11 10 24 24 H 1.09000 * 109.47002 * 300.00414 * 13 11 10 25 25 H 1.08997 * 109.47056 * 60.00061 * 14 13 11 26 26 H 1.09000 * 109.47122 * 299.99865 * 14 13 11 27 27 H 1.09002 * 113.38857 * 318.07816 * 15 14 13 28 28 H 1.09004 * 113.47747 * 105.56637 * 16 15 14 29 29 H 1.08995 * 113.53124 * 335.10698 * 16 15 14 30 30 H 1.00901 * 110.99857 * 138.69928 * 17 16 15 31 31 H 1.08996 * 113.47304 * 87.75121 * 18 17 16 32 32 H 1.08997 * 113.47652 * 218.22256 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5613 -5.1050 0.0011 13 6 2.7330 -6.0288 0.0016 14 6 1.9680 -7.3538 0.0015 15 6 2.9622 -8.5167 0.0015 16 6 2.3102 -9.9011 -0.1207 17 7 3.2841 -10.3886 0.8738 18 6 3.3491 -9.0130 1.4017 19 1 -0.4851 0.8401 -0.0004 20 1 0.6246 -2.5570 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 3.1567 -3.4354 0.0009 23 1 3.3595 -5.9707 0.8916 24 1 3.3598 -5.9714 -0.8883 25 1 1.3417 -7.4117 -0.8887 26 1 1.3410 -7.4114 0.8913 27 1 3.8092 -8.3618 -0.6669 28 1 2.4318 -10.3531 -1.1052 29 1 1.2790 -9.9291 0.2313 30 1 2.8442 -11.0097 1.5363 31 1 2.5953 -8.8030 2.1604 32 1 4.3512 -8.7122 1.7075 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709431801.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:46 Heat of formation + Delta-G solvation = -25.570657 kcal Electronic energy + Delta-G solvation = -13541.582912 eV Core-core repulsion = 11116.328065 eV Total energy + Delta-G solvation = -2425.254847 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.90529 -38.65147 -34.22792 -33.00165 -32.27370 -28.23078 -26.64136 -25.94661 -23.45399 -21.88647 -19.75255 -19.51173 -17.13366 -16.34817 -15.89016 -15.32465 -15.21860 -14.99851 -14.25473 -13.91208 -13.10589 -12.84423 -12.67383 -12.15243 -11.96716 -11.78586 -11.33058 -11.15384 -10.98446 -10.88263 -10.78018 -10.32477 -10.30284 -9.39695 -9.23162 -8.99013 -8.73420 -7.86608 -6.16820 -4.23787 3.23990 3.30073 3.32561 3.41455 4.01369 4.09342 4.29943 4.39864 4.69910 5.14111 5.15332 5.19200 5.22606 5.37148 5.45826 5.57199 5.58389 5.70425 5.81812 5.88820 6.00987 6.23229 6.39445 7.00156 7.31543 7.45948 7.52166 7.67180 7.97417 8.64880 8.78568 9.13043 9.43147 10.93445 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.088394 B = 0.004663 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.686443 B = 6003.776842 C = 6198.505281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.248 3.752 10 N -0.715 5.715 11 C 0.495 3.505 12 O -0.560 6.560 13 C -0.139 4.139 14 C -0.093 4.093 15 C -0.114 4.114 16 C 0.002 3.998 17 N -0.633 5.633 18 C 0.002 3.998 19 H 0.266 0.734 20 H 0.026 0.974 21 H 0.026 0.974 22 H 0.390 0.610 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.317 0.683 31 H 0.067 0.933 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.173 -14.691 1.072 16.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.127 3.873 10 N -0.363 5.363 11 C 0.280 3.720 12 O -0.440 6.440 13 C -0.179 4.179 14 C -0.131 4.131 15 C -0.133 4.133 16 C -0.128 4.128 17 N -0.257 5.257 18 C -0.129 4.129 19 H 0.075 0.925 20 H 0.044 0.956 21 H 0.044 0.956 22 H 0.223 0.777 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.120 0.880 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.129 0.871 31 H 0.086 0.914 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.901 -14.883 0.672 16.419 hybrid contribution 0.003 1.248 0.524 1.354 sum 6.905 -13.635 1.196 15.330 Atomic orbital electron populations 1.69976 1.06130 1.27295 1.48948 1.24961 0.94914 0.99474 0.94698 0.86411 0.79623 0.82628 0.78230 1.20451 1.20997 1.19734 1.21240 0.93270 0.90507 1.53163 0.91899 1.19094 0.88396 0.82117 0.97663 1.46495 1.11065 1.06329 1.72372 1.20580 0.89587 0.84539 0.77298 1.90647 1.17143 1.85047 1.51185 1.21654 0.98636 0.93877 1.03775 1.21280 0.96765 0.91363 1.03699 1.22832 0.99233 0.93868 0.97350 1.23643 0.95393 0.95294 0.98456 1.67314 1.38197 1.07290 1.12915 1.23719 1.02217 0.90100 0.96843 0.92451 0.95615 0.95618 0.77711 0.89535 0.89452 0.90756 0.91180 0.88038 0.89938 0.91450 0.87092 0.91442 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.64 5.43 -5.20 -0.03 6.61 16 10 N -0.71 -15.06 5.55 -61.48 -0.34 -15.40 16 11 C 0.49 9.75 7.83 -10.99 -0.09 9.66 16 12 O -0.56 -13.43 15.98 5.56 0.09 -13.34 16 13 C -0.14 -1.86 5.69 -27.88 -0.16 -2.02 16 14 C -0.09 -1.16 4.41 -26.73 -0.12 -1.28 16 15 C -0.11 -1.16 3.99 -90.09 -0.36 -1.51 16 16 C 0.00 0.02 8.20 -7.54 -0.06 -0.04 16 17 N -0.63 -6.20 8.71 -122.62 -1.07 -7.27 16 18 C 0.00 0.01 8.19 -7.53 -0.06 -0.05 16 19 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 20 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.39 7.00 8.32 -40.82 -0.34 6.66 16 23 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 26 H 0.07 0.95 7.77 -51.93 -0.40 0.55 16 27 H 0.10 1.00 8.12 -51.93 -0.42 0.58 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 30 H 0.32 2.60 8.91 -39.29 -0.35 2.25 16 31 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 274.81 15.07 4.14 4.14 Total: -1.00 -32.05 274.81 -7.59 -39.64 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.84 Total: 4.00 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.29 Total: -2.12 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -0.67 Total: -48.17 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -32.05 -7.59 -39.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709431801.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.070 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds