Wall clock time and date at job start Mon Mar 30 2020 02:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99882 * 2 1 4 4 H 1.48503 * 109.46911 * 269.99697 * 3 2 1 5 5 H 1.48496 * 109.47314 * 30.00005 * 3 2 1 6 6 H 1.48496 * 109.47014 * 150.00087 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99837 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00059 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47316 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00439 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99762 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00170 * 180.02562 * 11 10 9 14 14 C 1.53001 * 109.47140 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47031 * 179.97438 * 14 13 11 16 16 C 1.53515 * 114.16965 * 184.99981 * 15 14 13 17 17 N 1.47481 * 87.93334 * 220.32733 * 16 15 14 18 18 C 1.47488 * 87.83530 * 27.00963 * 17 16 15 19 19 H 0.97006 * 120.00492 * 0.02562 * 1 2 3 20 20 H 1.09006 * 109.47062 * 59.99880 * 9 7 2 21 21 H 1.09000 * 109.47242 * 299.99887 * 9 7 2 22 22 H 0.97004 * 119.99645 * 0.02562 * 10 9 7 23 23 H 1.08994 * 109.47034 * 60.00028 * 13 11 10 24 24 H 1.09000 * 109.47002 * 300.00414 * 13 11 10 25 25 H 1.08997 * 109.47056 * 60.00061 * 14 13 11 26 26 H 1.09000 * 109.47122 * 299.99865 * 14 13 11 27 27 H 1.09002 * 113.38857 * 318.07816 * 15 14 13 28 28 H 1.09004 * 113.47747 * 105.56637 * 16 15 14 29 29 H 1.08995 * 113.53124 * 335.10698 * 16 15 14 30 30 H 1.00901 * 110.99857 * 138.69928 * 17 16 15 31 31 H 1.08996 * 113.47304 * 87.75121 * 18 17 16 32 32 H 1.08997 * 113.47652 * 218.22256 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5613 -5.1050 0.0011 13 6 2.7330 -6.0288 0.0016 14 6 1.9680 -7.3538 0.0015 15 6 2.9622 -8.5167 0.0015 16 6 2.3102 -9.9011 -0.1207 17 7 3.2841 -10.3886 0.8738 18 6 3.3491 -9.0130 1.4017 19 1 -0.4851 0.8401 -0.0004 20 1 0.6246 -2.5570 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 3.1567 -3.4354 0.0009 23 1 3.3595 -5.9707 0.8916 24 1 3.3598 -5.9714 -0.8883 25 1 1.3417 -7.4117 -0.8887 26 1 1.3410 -7.4114 0.8913 27 1 3.8092 -8.3618 -0.6669 28 1 2.4318 -10.3531 -1.1052 29 1 1.2790 -9.9291 0.2313 30 1 2.8442 -11.0097 1.5363 31 1 2.5953 -8.8030 2.1604 32 1 4.3512 -8.7122 1.7075 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709431801.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:45 Heat of formation + Delta-G solvation = -51.522958 kcal Electronic energy + Delta-G solvation = -13542.708288 eV Core-core repulsion = 11116.328065 eV Total energy + Delta-G solvation = -2426.380223 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.87351 -40.14480 -36.16813 -34.39281 -34.04944 -29.84297 -28.09017 -26.68632 -25.06014 -23.42388 -21.23601 -20.50942 -18.87197 -17.65817 -17.08381 -16.89184 -16.66384 -16.30241 -15.94567 -15.12575 -14.55907 -14.33783 -13.98343 -13.65212 -13.47420 -13.11533 -12.85249 -12.71054 -12.33809 -12.22479 -12.14514 -11.70766 -11.48510 -11.15929 -10.80532 -10.69972 -9.95502 -9.80959 -8.29596 -6.46468 1.43306 1.45762 1.57079 1.81683 2.33317 2.64059 3.05298 3.31031 3.48393 3.81468 3.95434 4.31619 4.37757 4.44697 4.50805 4.67584 4.79704 4.83335 4.88410 5.03624 5.10028 5.15084 5.22780 5.26043 5.44299 5.50612 5.71316 5.85255 6.31686 6.65313 6.94144 7.23466 7.53594 8.82744 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.088394 B = 0.004663 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.686443 B = 6003.776842 C = 6198.505281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.263 3.737 10 N -0.710 5.710 11 C 0.489 3.511 12 O -0.609 6.609 13 C -0.123 4.123 14 C -0.087 4.087 15 C -0.107 4.107 16 C 0.002 3.998 17 N -0.642 5.642 18 C 0.003 3.997 19 H 0.269 0.731 20 H -0.015 1.015 21 H -0.014 1.014 22 H 0.409 0.591 23 H 0.116 0.884 24 H 0.118 0.882 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.326 0.674 31 H 0.068 0.932 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.835 -14.853 1.143 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.140 3.860 10 N -0.360 5.360 11 C 0.277 3.723 12 O -0.492 6.492 13 C -0.163 4.163 14 C -0.126 4.126 15 C -0.126 4.126 16 C -0.129 4.129 17 N -0.266 5.266 18 C -0.127 4.127 19 H 0.078 0.922 20 H 0.003 0.997 21 H 0.004 0.996 22 H 0.245 0.755 23 H 0.134 0.866 24 H 0.136 0.864 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.130 0.870 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.139 0.861 31 H 0.087 0.913 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.614 -15.083 0.745 17.902 hybrid contribution -0.882 1.219 0.504 1.587 sum 8.732 -13.864 1.249 16.432 Atomic orbital electron populations 1.70141 1.08341 1.28580 1.50032 1.26093 0.95776 1.03998 0.93821 0.85140 0.78500 0.76859 0.78615 1.19584 1.20982 1.17822 1.21641 0.94350 0.90610 1.52849 0.89730 1.18535 0.88853 0.84663 0.93921 1.46263 1.11154 1.05754 1.72828 1.21783 0.90086 0.85251 0.75135 1.90626 1.19901 1.85706 1.52935 1.21675 0.97270 0.90752 1.06557 1.21206 0.97032 0.92045 1.02289 1.22754 0.98804 0.92856 0.98187 1.23659 0.95492 0.94926 0.98776 1.67303 1.38413 1.07597 1.13322 1.23731 1.02690 0.89913 0.96408 0.92250 0.99671 0.99647 0.75503 0.86569 0.86432 0.92344 0.92664 0.86998 0.89498 0.91341 0.86116 0.91327 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 2 C 0.00 0.14 5.46 84.66 0.46 0.61 16 3 Si 0.99 42.25 29.54 68.60 2.03 44.27 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 7 C -0.56 -30.40 9.28 25.60 0.24 -30.17 16 8 H 0.08 4.15 7.60 -2.91 -0.02 4.12 16 9 C 0.26 14.61 5.43 85.63 0.46 15.08 16 10 N -0.71 -29.86 5.55 -466.80 -2.59 -32.45 16 11 C 0.49 19.19 7.83 87.66 0.69 19.88 16 12 O -0.61 -30.17 15.98 -3.03 -0.05 -30.22 16 13 C -0.12 -2.99 5.69 29.85 0.17 -2.82 16 14 C -0.09 -2.06 4.41 30.59 0.14 -1.93 16 15 C -0.11 -1.91 3.99 -10.45 -0.04 -1.95 16 16 C 0.00 0.03 8.20 83.58 0.69 0.72 16 17 N -0.64 -11.15 8.71 -541.87 -4.72 -15.87 16 18 C 0.00 0.05 8.19 83.58 0.68 0.73 16 19 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 20 H -0.01 -0.92 8.14 -2.38 -0.02 -0.94 16 21 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 22 H 0.41 13.96 8.32 -92.71 -0.77 13.19 16 23 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 26 H 0.05 1.47 7.77 -2.39 -0.02 1.45 16 27 H 0.11 1.82 8.12 -2.39 -0.02 1.80 16 28 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.16 8.10 -2.39 -0.02 1.14 16 30 H 0.33 4.72 8.91 -89.69 -0.80 3.92 16 31 H 0.07 1.13 7.87 -2.39 -0.02 1.11 16 32 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -71.59 274.81 -2.02 -73.61 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -0.45 Total: 16.83 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 3.48 Total: 0.14 kcal Atomic # 7 Polarization: -97.60 SS G_CDS: -7.03 Total: -104.62 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -0.05 Total: -30.22 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Total: -71.59 -2.02 -73.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709431801.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.083 kcal (2) G-P(sol) polarization free energy of solvation -71.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds