Wall clock time and date at job start Mon Mar 30 2020 02:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47068 * 2 1 4 4 H 1.08997 * 109.47513 * 303.59650 * 3 2 1 5 5 C 1.50696 * 109.47485 * 183.59106 * 3 2 1 6 6 H 1.08003 * 120.00209 * 245.52598 * 5 3 2 7 7 C 1.37879 * 119.99989 * 65.52112 * 5 3 2 8 8 N 1.31521 * 119.99666 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00218 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47304 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47286 * 120.00377 * 9 7 5 12 12 H 1.48504 * 109.47117 * 240.00193 * 9 7 5 13 13 C 1.53005 * 109.47063 * 63.59392 * 3 2 1 14 14 C 1.50704 * 112.84939 * 55.08591 * 13 3 2 15 15 O 1.20824 * 119.99893 * 356.60226 * 14 13 3 16 16 O 1.34229 * 120.00019 * 176.60080 * 14 13 3 17 17 C 1.53774 * 113.69225 * 186.35834 * 13 3 2 18 18 C 1.53777 * 87.08309 * 89.12429 * 17 13 3 19 19 C 1.53784 * 113.61240 * 283.89555 * 13 3 2 20 20 H 1.08996 * 109.47313 * 50.35392 * 1 2 3 21 21 H 1.08997 * 109.46447 * 170.35665 * 1 2 3 22 22 H 1.08997 * 109.46727 * 290.35615 * 1 2 3 23 23 H 1.09002 * 109.47264 * 240.00137 * 2 1 3 24 24 H 1.08995 * 109.47700 * 119.99923 * 2 1 3 25 25 H 0.96997 * 119.99623 * 179.97438 * 8 7 5 26 26 H 0.96695 * 116.99885 * 180.02562 * 16 14 13 27 27 H 1.09005 * 113.61816 * 203.67713 * 17 13 3 28 28 H 1.09005 * 113.61654 * 334.57626 * 17 13 3 29 29 H 1.08999 * 113.61867 * 270.88118 * 18 17 13 30 30 H 1.09002 * 113.61196 * 139.97722 * 18 17 13 31 31 H 1.08992 * 113.61666 * 25.34242 * 19 13 3 32 32 H 1.09004 * 113.61362 * 156.25392 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6250 1.9747 -0.8560 5 6 3.5443 1.4435 -0.0890 6 1 4.1339 1.8135 0.7368 7 6 4.1681 0.9720 -1.2246 8 7 3.4501 0.5219 -2.2304 9 14 6.0328 0.9726 -1.3347 10 1 6.6026 1.5265 -0.0802 11 1 6.5177 -0.4176 -1.5278 12 1 6.4605 1.8102 -2.4840 13 6 1.6051 2.1372 1.2920 14 6 2.0396 1.3956 2.5300 15 8 2.6097 0.3350 2.4300 16 8 1.7932 1.9133 3.7436 17 6 1.9332 3.6391 1.3267 18 6 0.5601 3.8740 0.6755 19 6 0.1214 2.5411 1.3049 20 1 -0.3634 0.6557 -0.7913 21 1 -0.3632 -1.0132 -0.1722 22 1 -0.3633 0.3575 0.9635 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 3.8889 0.1905 -3.0295 26 1 2.0911 1.4014 4.5080 27 1 2.0137 4.0454 2.3350 28 1 2.7722 3.9176 0.6889 29 1 0.5845 3.8553 -0.4140 30 1 0.0306 4.7398 1.0733 31 1 -0.5023 1.9333 0.6496 32 1 -0.2936 2.6473 2.3073 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709471308.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:30 Heat of formation + Delta-G solvation = -94.306046 kcal Electronic energy + Delta-G solvation = -15252.900373 eV Core-core repulsion = 12792.372184 eV Total energy + Delta-G solvation = -2460.528188 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.82420 -39.26705 -37.04399 -35.45088 -33.40280 -29.92145 -27.41737 -26.20547 -25.02589 -22.93921 -21.69771 -19.81746 -18.65283 -18.42413 -17.11208 -16.70032 -16.36501 -15.77646 -14.91999 -14.81317 -14.32799 -14.00545 -13.37931 -13.16243 -13.01512 -12.87081 -12.65513 -12.48812 -12.36314 -12.26664 -11.99256 -11.91809 -11.42033 -11.14037 -10.81465 -10.51756 -10.41480 -10.18316 -8.06197 -6.12448 1.35906 1.38790 1.48008 1.48693 2.38948 2.44589 3.24094 3.78986 3.93377 4.03844 4.08218 4.61066 4.66025 4.73973 4.79899 4.90771 4.95590 5.04297 5.15813 5.27925 5.30084 5.32765 5.44569 5.59908 5.68624 5.71664 5.81368 6.08788 6.15726 6.46342 6.93502 7.30679 7.51613 9.00695 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.029851 B = 0.012762 C = 0.012052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.778838 B = 2193.571448 C = 2322.634229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.087 3.913 4 H 0.023 0.977 5 C -0.501 4.501 6 H 0.037 0.963 7 C 0.011 3.989 8 N -0.918 5.918 9 Si 0.941 3.059 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.276 1.276 13 C -0.074 4.074 14 C 0.489 3.511 15 O -0.532 6.532 16 O -0.513 6.513 17 C -0.120 4.120 18 C -0.123 4.123 19 C -0.133 4.133 20 H 0.050 0.950 21 H 0.042 0.958 22 H 0.063 0.937 23 H 0.042 0.958 24 H 0.051 0.949 25 H 0.258 0.742 26 H 0.417 0.583 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.751 5.378 8.316 11.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.069 3.931 4 H 0.041 0.959 5 C -0.539 4.539 6 H 0.056 0.944 7 C -0.186 4.186 8 N -0.559 5.559 9 Si 0.768 3.232 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.202 1.202 13 C -0.075 4.075 14 C 0.333 3.667 15 O -0.421 6.421 16 O -0.327 6.327 17 C -0.158 4.158 18 C -0.160 4.160 19 C -0.170 4.170 20 H 0.069 0.931 21 H 0.061 0.939 22 H 0.082 0.918 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.277 0.723 27 H 0.115 0.885 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.699 5.247 7.781 11.530 hybrid contribution 1.663 -0.853 0.096 1.871 sum -5.036 4.394 7.876 10.330 Atomic orbital electron populations 1.22040 0.96584 1.00336 1.01028 1.21727 0.94192 0.99843 1.00990 1.18259 0.93902 0.91853 0.89074 0.95912 1.21295 0.92845 1.39839 0.99922 0.94442 1.25562 1.01493 0.95680 0.95887 1.70034 1.35913 1.43822 1.06085 0.85764 0.82160 0.77433 0.77852 1.19876 1.21308 1.20172 1.22118 0.99200 0.95732 0.90497 1.23721 0.74540 0.83484 0.85003 1.90604 1.39655 1.24633 1.87177 1.84478 1.76633 1.54849 1.16697 1.22913 0.98876 0.92159 1.01817 1.22700 0.95537 0.97780 0.99966 1.23423 0.92899 0.97753 1.02916 0.93139 0.93928 0.91782 0.93977 0.93073 0.93319 0.72263 0.88462 0.92322 0.91040 0.88569 0.89205 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.54 8.23 71.98 0.59 -4.95 16 2 C -0.13 -6.42 5.02 30.60 0.15 -6.27 16 3 C 0.09 4.31 1.21 -11.54 -0.01 4.30 16 4 H 0.02 1.21 7.31 -2.39 -0.02 1.20 16 5 C -0.50 -28.12 6.85 25.60 0.18 -27.95 16 6 H 0.04 2.15 7.59 -2.91 -0.02 2.13 16 7 C 0.01 0.65 5.31 84.65 0.45 1.10 16 8 N -0.92 -54.36 11.73 21.45 0.25 -54.11 16 9 Si 0.94 45.83 29.54 68.60 2.03 47.86 16 10 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 13 C -0.07 -2.92 0.35 -52.40 -0.02 -2.94 16 14 C 0.49 19.25 6.94 71.24 0.49 19.74 16 15 O -0.53 -25.26 13.75 21.97 0.30 -24.96 16 16 O -0.51 -14.77 12.67 -51.40 -0.65 -15.42 16 17 C -0.12 -4.12 7.02 31.12 0.22 -3.90 16 18 C -0.12 -3.55 7.73 31.12 0.24 -3.31 16 19 C -0.13 -4.05 6.03 31.12 0.19 -3.86 16 20 H 0.05 1.88 7.61 -2.39 -0.02 1.87 16 21 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.06 2.19 5.71 -2.39 -0.01 2.17 16 23 H 0.04 2.38 6.45 -2.39 -0.02 2.36 16 24 H 0.05 2.69 5.20 -2.39 -0.01 2.67 16 25 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 26 H 0.42 8.19 9.10 -74.06 -0.67 7.52 16 27 H 0.10 2.89 7.72 -2.38 -0.02 2.87 16 28 H 0.06 2.28 7.64 -2.38 -0.02 2.27 16 29 H 0.07 2.27 7.61 -2.39 -0.02 2.25 16 30 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.09 2.75 4.51 -2.39 -0.01 2.74 16 32 H 0.10 2.61 7.90 -2.39 -0.02 2.59 16 Total: -1.00 -67.35 252.63 4.86 -62.49 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.45 Total: 12.17 kcal Atomic # 6 Polarization: -30.51 SS G_CDS: 2.48 Total: -28.03 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.25 Total: -54.11 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -0.35 Total: -40.38 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -67.35 4.86 -62.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709471308.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.815 kcal (2) G-P(sol) polarization free energy of solvation -67.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds