Wall clock time and date at job start Mon Mar 30 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46495 * 2 1 4 4 C 1.50698 * 109.46994 * 239.99694 * 2 1 3 5 5 H 1.07998 * 119.99818 * 239.99186 * 4 2 1 6 6 C 1.37872 * 119.99978 * 60.00428 * 4 2 1 7 7 N 1.31512 * 120.00246 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99719 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47065 * 89.99832 * 8 6 4 10 10 H 1.48502 * 109.46969 * 209.99583 * 8 6 4 11 11 H 1.48494 * 109.47354 * 329.99758 * 8 6 4 12 12 C 1.52995 * 109.46720 * 119.99501 * 2 1 3 13 13 C 1.50696 * 110.02082 * 60.70812 * 12 2 1 14 14 O 1.20833 * 119.99655 * 359.30012 * 13 12 2 15 15 O 1.34222 * 120.00432 * 179.58279 * 13 12 2 16 16 C 1.54267 * 110.06873 * 182.12122 * 12 2 1 17 17 C 1.54890 * 104.19707 * 95.70091 * 16 12 2 18 18 C 1.54886 * 102.75118 * 37.93754 * 17 16 12 19 19 C 1.53877 * 110.03674 * 299.30903 * 12 2 1 20 20 H 1.09002 * 109.46951 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.47278 * 300.00408 * 1 2 3 22 22 H 1.08999 * 109.47163 * 60.00861 * 1 2 3 23 23 H 0.97003 * 119.99613 * 180.02562 * 7 6 4 24 24 H 0.96701 * 117.00458 * 179.72178 * 15 13 12 25 25 H 1.09008 * 110.48676 * 214.37233 * 16 12 2 26 26 H 1.08996 * 110.48875 * 337.01975 * 16 12 2 27 27 H 1.09005 * 110.75137 * 279.62398 * 17 16 12 28 28 H 1.09002 * 110.75870 * 156.26159 * 17 16 12 29 29 H 1.08993 * 110.49228 * 203.38183 * 18 17 16 30 30 H 1.09002 * 110.59726 * 80.79600 * 18 17 16 31 31 H 1.09005 * 110.03005 * 359.95531 * 19 12 2 32 32 H 1.08996 * 110.03027 * 121.33349 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 1.3448 -2.1618 -4.4122 10 1 2.4874 -0.1405 -5.1120 11 1 3.6309 -1.7568 -3.7118 12 6 2.0399 -0.7211 1.2493 13 6 1.5587 -2.1492 1.2532 14 8 0.8624 -2.5545 0.3527 15 8 1.8989 -2.9693 2.2598 16 6 3.5816 -0.6829 1.2904 17 6 3.9075 0.5342 2.1912 18 6 2.8085 0.4579 3.2799 19 6 1.5484 0.0042 2.5142 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 0.7083 1.1607 -3.4845 24 1 1.5629 -3.8753 2.2206 25 1 3.9743 -1.5995 1.7309 26 1 3.9864 -0.5358 0.2892 27 1 3.8290 1.4639 1.6275 28 1 4.8981 0.4325 2.6344 29 1 2.6490 1.4374 3.7304 30 1 3.0749 -0.2732 4.0432 31 1 0.9472 0.8705 2.2381 32 1 0.9610 -0.6764 3.1304 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709471894.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:57 Heat of formation + Delta-G solvation = -128.233633 kcal Electronic energy + Delta-G solvation = -15218.017353 eV Core-core repulsion = 12756.017954 eV Total energy + Delta-G solvation = -2461.999399 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.63721 -38.80215 -36.99069 -35.33459 -32.61759 -29.84310 -28.95461 -26.97431 -23.91577 -23.06321 -21.45023 -20.12678 -18.63897 -18.35757 -17.02834 -16.69529 -16.29766 -15.83534 -15.05754 -14.69487 -14.18606 -14.10346 -13.64360 -13.04462 -12.89884 -12.71907 -12.48594 -12.36971 -12.30264 -12.12765 -11.84001 -11.72355 -11.59728 -11.30673 -11.01209 -10.87368 -10.57248 -10.30540 -8.02821 -6.09132 1.37110 1.39874 1.47585 1.53226 2.37954 2.46128 3.26310 3.83349 3.84341 4.02910 4.50982 4.60369 4.63431 4.68618 4.89822 4.95149 5.06112 5.11247 5.12330 5.19974 5.30099 5.35446 5.48146 5.54039 5.62249 5.65386 5.79406 6.04203 6.14458 6.43288 6.93170 7.32228 7.53831 9.02761 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.033416 B = 0.012132 C = 0.011291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.713823 B = 2307.308119 C = 2479.315259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.068 3.932 3 H 0.018 0.982 4 C -0.489 4.489 5 H 0.041 0.959 6 C 0.007 3.993 7 N -0.921 5.921 8 Si 0.941 3.059 9 H -0.288 1.288 10 H -0.281 1.281 11 H -0.268 1.268 12 C -0.045 4.045 13 C 0.483 3.517 14 O -0.526 6.526 15 O -0.514 6.514 16 C -0.108 4.108 17 C -0.116 4.116 18 C -0.110 4.110 19 C -0.112 4.112 20 H 0.035 0.965 21 H 0.028 0.972 22 H 0.050 0.950 23 H 0.257 0.743 24 H 0.416 0.584 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.460 -2.540 11.898 12.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.049 3.951 3 H 0.036 0.964 4 C -0.527 4.527 5 H 0.059 0.941 6 C -0.190 4.190 7 N -0.563 5.563 8 Si 0.768 3.232 9 H -0.214 1.214 10 H -0.207 1.207 11 H -0.193 1.193 12 C -0.046 4.046 13 C 0.326 3.674 14 O -0.413 6.413 15 O -0.328 6.328 16 C -0.146 4.146 17 C -0.153 4.153 18 C -0.148 4.148 19 C -0.149 4.149 20 H 0.054 0.946 21 H 0.047 0.953 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.276 0.724 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.343 -2.146 11.527 12.503 hybrid contribution -0.399 -1.109 -1.488 1.898 sum 3.945 -3.255 10.038 11.266 Atomic orbital electron populations 1.21913 0.98957 0.99738 0.99334 1.18537 0.92494 0.94046 0.89991 0.96417 1.21243 1.29270 1.10598 0.91603 0.94072 1.25565 0.96024 0.95921 1.01444 1.70000 1.38524 1.24414 1.23341 0.85813 0.78689 0.78380 0.80301 1.21436 1.20655 1.19306 1.21343 0.97871 0.86784 0.98590 1.23788 0.76415 0.89250 0.77918 1.90679 1.36423 1.77041 1.37193 1.84506 1.72562 1.27791 1.47920 1.22419 0.91589 0.99834 1.00752 1.22462 0.99639 0.96946 0.96261 1.22325 0.93120 1.02053 0.97270 1.22290 0.99266 0.99652 0.93739 0.94602 0.95329 0.93092 0.93421 0.72433 0.90793 0.92168 0.92321 0.89225 0.90027 0.89984 0.91544 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.29 8.44 71.98 0.61 -6.68 16 2 C 0.07 3.40 1.48 -11.54 -0.02 3.38 16 3 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.49 -27.49 5.93 25.60 0.15 -27.34 16 5 H 0.04 2.35 6.90 -2.91 -0.02 2.33 16 6 C 0.01 0.42 5.30 84.65 0.45 0.87 16 7 N -0.92 -55.12 11.32 21.45 0.24 -54.88 16 8 Si 0.94 46.20 29.54 68.60 2.03 48.22 16 9 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 10 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 11 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 12 C -0.04 -1.78 0.36 -52.21 -0.02 -1.80 16 13 C 0.48 19.47 5.96 71.23 0.42 19.89 16 14 O -0.53 -25.67 13.24 21.94 0.29 -25.37 16 15 O -0.51 -15.32 12.83 -51.34 -0.66 -15.97 16 16 C -0.11 -3.82 5.59 31.67 0.18 -3.64 16 17 C -0.12 -3.23 6.91 31.88 0.22 -3.01 16 18 C -0.11 -2.76 6.83 31.67 0.22 -2.54 16 19 C -0.11 -3.60 5.51 31.32 0.17 -3.43 16 20 H 0.04 1.90 5.60 -2.39 -0.01 1.89 16 21 H 0.03 1.26 6.52 -2.39 -0.02 1.25 16 22 H 0.05 2.91 6.07 -2.39 -0.01 2.90 16 23 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 24 H 0.42 8.58 9.10 -74.06 -0.67 7.91 16 25 H 0.07 2.36 7.53 -2.38 -0.02 2.34 16 26 H 0.06 2.45 6.75 -2.39 -0.02 2.44 16 27 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 31 H 0.07 2.25 6.38 -2.38 -0.02 2.24 16 32 H 0.07 2.04 7.58 -2.39 -0.02 2.02 16 Total: -1.00 -67.83 252.00 4.73 -63.10 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.45 Total: 9.19 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: 2.38 Total: -24.29 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.24 Total: -54.88 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.37 Total: -41.35 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -67.83 4.73 -63.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709471894.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.132 kcal (2) G-P(sol) polarization free energy of solvation -67.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds