Wall clock time and date at job start Mon Mar 30 2020 02:20:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52997 * 109.47582 * 2 1
4 4 C 1.53007 * 109.46718 * 60.00015 * 3 2 1
5 5 C 1.50705 * 109.46458 * 179.97438 * 4 3 2
6 6 H 1.07992 * 120.00480 * 359.97438 * 5 4 3
7 7 C 1.37882 * 119.99562 * 179.97438 * 5 4 3
8 8 N 1.31515 * 119.99997 * 0.02562 * 7 5 4
9 9 Si 1.86802 * 120.00123 * 180.02562 * 7 5 4
10 10 H 1.48503 * 109.46702 * 0.02562 * 9 7 5
11 11 H 1.48495 * 109.47165 * 120.00043 * 9 7 5
12 12 H 1.48502 * 109.47197 * 240.00238 * 9 7 5
13 13 C 1.50706 * 109.46823 * 120.00201 * 2 1 3
14 14 O 1.20816 * 120.00048 * 359.97438 * 13 2 1
15 15 O 1.34231 * 120.00014 * 179.97438 * 13 2 1
16 16 C 1.53003 * 109.47107 * 239.99878 * 2 1 3
17 17 C 1.53001 * 117.51964 * 231.28841 * 16 2 1
18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 2
19 19 H 1.08996 * 109.47501 * 179.97438 * 1 2 3
20 20 H 1.09004 * 109.47169 * 300.00278 * 1 2 3
21 21 H 1.09005 * 109.46926 * 59.99406 * 1 2 3
22 22 H 1.09000 * 109.47179 * 179.97438 * 3 2 1
23 23 H 1.08996 * 109.47327 * 300.00426 * 3 2 1
24 24 H 1.09000 * 109.46988 * 299.99741 * 4 3 2
25 25 H 1.08997 * 109.47266 * 60.00511 * 4 3 2
26 26 H 0.97004 * 120.00297 * 180.02562 * 8 7 5
27 27 H 0.96693 * 117.00051 * 180.02562 * 15 13 2
28 28 H 1.09002 * 115.54973 * 85.58625 * 16 2 1
29 29 H 1.09001 * 117.49733 * 214.97413 * 17 16 2
30 30 H 1.08995 * 117.49577 * 359.97438 * 17 16 2
31 31 H 1.09004 * 117.50150 * 252.51496 * 18 17 16
32 32 H 1.09004 * 117.51638 * 107.47550 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 1.5301 2.1637 1.2493
5 6 2.0331 3.5843 1.2496
6 1 2.6546 3.9372 0.4401
7 6 1.6997 4.4334 2.2835
8 7 0.9432 4.0034 3.2696
9 14 2.3225 6.1945 2.2836
10 1 3.1475 6.4278 1.0711
11 1 1.1676 7.1280 2.2832
12 1 3.1471 6.4279 3.4964
13 6 2.0322 -0.7105 1.2305
14 8 1.2471 -1.1692 2.0260
15 8 3.3519 -0.8336 1.4427
16 6 2.0400 -0.7213 -1.2492
17 6 3.0757 -1.8301 -1.0521
18 6 1.6373 -2.1859 -1.4333
19 1 -0.3634 -1.0276 -0.0005
20 1 -0.3634 0.5139 0.8900
21 1 -0.3633 0.5140 -0.8900
22 1 3.1301 1.4423 0.0005
23 1 1.6767 1.9563 -0.8899
24 1 0.4401 2.1637 1.2493
25 1 1.8934 1.6498 2.1393
26 1 0.7083 4.6008 3.9969
27 1 3.6261 -1.2976 2.2456
28 1 2.1253 -0.1064 -2.1452
29 1 3.8425 -1.9445 -1.8183
30 1 3.3942 -2.0455 -0.0322
31 1 1.0093 -2.6356 -0.6641
32 1 1.4574 -2.5343 -2.4503
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000709503990.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:20:54
Heat of formation + Delta-G solvation = -106.004203 kcal
Electronic energy + Delta-G solvation = -14642.616688 eV
Core-core repulsion = 12181.581230 eV
Total energy + Delta-G solvation = -2461.035458 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 212.120 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-41.93888 -38.59473 -37.21414 -36.09665 -34.29848 -30.81604 -27.50129 -25.86268
-24.24873 -23.08430 -22.05795 -20.46658 -18.85950 -18.67673 -17.49095 -16.89119
-16.46973 -15.82578 -15.30328 -14.85980 -14.50884 -14.18929 -13.94223 -13.37366
-13.14856 -12.87835 -12.77532 -12.64194 -12.43566 -12.21650 -11.87195 -11.83214
-11.55085 -11.37287 -11.16884 -10.91806 -10.76912 -10.55483 -8.20248 -6.32238
1.24916 1.40023 1.40292 1.53941 2.16387 2.40503 2.90098 3.12958
3.63246 3.80650 3.92242 4.17309 4.28873 4.39728 4.53232 4.72225
4.81358 4.85897 4.90307 5.02537 5.09071 5.15284 5.27324 5.28472
5.35291 5.51013 5.59162 5.71453 5.83937 6.22015 6.85885 7.01596
7.37452 8.91755
Molecular weight = 212.12amu
Principal moments of inertia in cm(-1)
A = 0.045785 B = 0.008054 C = 0.007839
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 611.400923 B = 3475.818618 C = 3571.221436
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.021 4.021
3 C -0.085 4.085
4 C 0.024 3.976
5 C -0.540 4.540
6 H 0.067 0.933
7 C -0.004 4.004
8 N -0.936 5.936
9 Si 0.967 3.033
10 H -0.257 1.257
11 H -0.278 1.278
12 H -0.281 1.281
13 C 0.497 3.503
14 O -0.555 6.555
15 O -0.502 6.502
16 C -0.148 4.148
17 C -0.185 4.185
18 C -0.174 4.174
19 H 0.065 0.935
20 H 0.037 0.963
21 H 0.087 0.913
22 H 0.065 0.935
23 H 0.081 0.919
24 H -0.001 1.001
25 H -0.025 1.025
26 H 0.262 0.738
27 H 0.417 0.583
28 H 0.135 0.865
29 H 0.116 0.884
30 H 0.099 0.901
31 H 0.078 0.922
32 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.035 -10.113 -9.914 14.725
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C -0.022 4.022
3 C -0.122 4.122
4 C -0.013 4.013
5 C -0.578 4.578
6 H 0.085 0.915
7 C -0.201 4.201
8 N -0.576 5.576
9 Si 0.791 3.209
10 H -0.181 1.181
11 H -0.204 1.204
12 H -0.207 1.207
13 C 0.342 3.658
14 O -0.445 6.445
15 O -0.315 6.315
16 C -0.166 4.166
17 C -0.222 4.222
18 C -0.211 4.211
19 H 0.084 0.916
20 H 0.056 0.944
21 H 0.106 0.894
22 H 0.083 0.917
23 H 0.100 0.900
24 H 0.017 0.983
25 H -0.006 1.006
26 H 0.071 0.929
27 H 0.278 0.722
28 H 0.153 0.847
29 H 0.134 0.866
30 H 0.117 0.883
31 H 0.097 0.903
32 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges 3.637 -9.987 -9.905 14.528
hybrid contribution 0.149 0.626 1.366 1.510
sum 3.785 -9.361 -8.539 13.223
Atomic orbital electron populations
1.21727 0.91790 1.02358 1.02543 1.20292 0.96997 0.95846 0.89032
1.21552 1.00527 0.90544 0.99611 1.19086 0.95263 0.94568 0.92378
1.21729 1.31365 0.97386 1.07284 0.91525 1.26044 0.95286 1.03706
0.95103 1.70142 1.38318 1.37654 1.11517 0.85373 0.78240 0.78808
0.78479 1.18069 1.20404 1.20652 1.23708 0.80025 0.74875 0.87234
1.90643 1.57920 1.48094 1.47874 1.84604 1.25325 1.73197 1.48390
1.22231 1.05487 0.91504 0.97394 1.23531 0.92886 1.01496 1.04248
1.23084 0.98030 0.96371 1.03643 0.91588 0.94418 0.89409 0.91655
0.90038 0.98274 1.00620 0.92901 0.72203 0.84715 0.86596 0.88251
0.90315 0.86026
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.41 7.25 71.98 0.52 -3.88 16
2 C -0.02 -0.71 0.60 -52.93 -0.03 -0.74 16
3 C -0.08 -3.42 4.13 30.60 0.13 -3.29 16
4 C 0.02 1.28 4.37 29.85 0.13 1.41 16
5 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16
6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16
7 C 0.00 -0.23 5.46 84.66 0.46 0.23 16
8 N -0.94 -58.56 13.29 21.45 0.28 -58.28 16
9 Si 0.97 44.60 29.54 68.60 2.03 46.63 16
10 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16
11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16
12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16
13 C 0.50 18.64 4.54 71.24 0.32 18.96 16
14 O -0.55 -24.22 16.74 21.99 0.37 -23.85 16
15 O -0.50 -15.55 10.67 -51.42 -0.55 -16.10 16
16 C -0.15 -3.79 5.15 -10.79 -0.06 -3.85 16
17 C -0.19 -4.19 9.43 30.59 0.29 -3.90 16
18 C -0.17 -3.79 9.50 30.60 0.29 -3.50 16
19 H 0.07 2.08 7.25 -2.39 -0.02 2.06 16
20 H 0.04 1.58 6.39 -2.39 -0.02 1.56 16
21 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16
22 H 0.06 2.59 8.11 -2.39 -0.02 2.57 16
23 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16
24 H 0.00 -0.06 6.43 -2.39 -0.02 -0.08 16
25 H -0.02 -1.47 7.22 -2.39 -0.02 -1.49 16
26 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16
27 H 0.42 9.27 9.10 -74.06 -0.67 8.60 16
28 H 0.14 2.97 8.11 -2.39 -0.02 2.95 16
29 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16
30 H 0.10 2.47 4.94 -2.39 -0.01 2.46 16
31 H 0.08 1.94 7.61 -2.39 -0.02 1.92 16
32 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16
Total: -1.00 -71.49 264.88 4.86 -66.62
By element:
Atomic # 1 Polarization: 13.71 SS G_CDS: 0.44 Total: 14.15 kcal
Atomic # 6 Polarization: -31.47 SS G_CDS: 2.29 Total: -29.18 kcal
Atomic # 7 Polarization: -58.56 SS G_CDS: 0.28 Total: -58.28 kcal
Atomic # 8 Polarization: -39.77 SS G_CDS: -0.18 Total: -39.95 kcal
Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal
Total: -71.49 4.86 -66.62 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709503990.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.380 kcal
(2) G-P(sol) polarization free energy of solvation -71.487 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.867 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.624 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.004 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds