Wall clock time and date at job start Mon Mar 30 2020 02:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47582 * 2 1 4 4 C 1.53007 * 109.46718 * 60.00015 * 3 2 1 5 5 C 1.50705 * 109.46458 * 179.97438 * 4 3 2 6 6 H 1.07992 * 120.00480 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99562 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99997 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00123 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46702 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47165 * 120.00043 * 9 7 5 12 12 H 1.48502 * 109.47197 * 240.00238 * 9 7 5 13 13 C 1.50706 * 109.46823 * 120.00201 * 2 1 3 14 14 O 1.20816 * 120.00048 * 359.97438 * 13 2 1 15 15 O 1.34231 * 120.00014 * 179.97438 * 13 2 1 16 16 C 1.53003 * 109.47107 * 239.99878 * 2 1 3 17 17 C 1.53001 * 117.51964 * 231.28841 * 16 2 1 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 2 19 19 H 1.08996 * 109.47501 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47169 * 300.00278 * 1 2 3 21 21 H 1.09005 * 109.46926 * 59.99406 * 1 2 3 22 22 H 1.09000 * 109.47179 * 179.97438 * 3 2 1 23 23 H 1.08996 * 109.47327 * 300.00426 * 3 2 1 24 24 H 1.09000 * 109.46988 * 299.99741 * 4 3 2 25 25 H 1.08997 * 109.47266 * 60.00511 * 4 3 2 26 26 H 0.97004 * 120.00297 * 180.02562 * 8 7 5 27 27 H 0.96693 * 117.00051 * 180.02562 * 15 13 2 28 28 H 1.09002 * 115.54973 * 85.58625 * 16 2 1 29 29 H 1.09001 * 117.49733 * 214.97413 * 17 16 2 30 30 H 1.08995 * 117.49577 * 359.97438 * 17 16 2 31 31 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 32 32 H 1.09004 * 117.51638 * 107.47550 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1637 1.2493 5 6 2.0331 3.5843 1.2496 6 1 2.6546 3.9372 0.4401 7 6 1.6997 4.4334 2.2835 8 7 0.9432 4.0034 3.2696 9 14 2.3225 6.1945 2.2836 10 1 3.1475 6.4278 1.0711 11 1 1.1676 7.1280 2.2832 12 1 3.1471 6.4279 3.4964 13 6 2.0322 -0.7105 1.2305 14 8 1.2471 -1.1692 2.0260 15 8 3.3519 -0.8336 1.4427 16 6 2.0400 -0.7213 -1.2492 17 6 3.0757 -1.8301 -1.0521 18 6 1.6373 -2.1859 -1.4333 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5140 -0.8900 22 1 3.1301 1.4423 0.0005 23 1 1.6767 1.9563 -0.8899 24 1 0.4401 2.1637 1.2493 25 1 1.8934 1.6498 2.1393 26 1 0.7083 4.6008 3.9969 27 1 3.6261 -1.2976 2.2456 28 1 2.1253 -0.1064 -2.1452 29 1 3.8425 -1.9445 -1.8183 30 1 3.3942 -2.0455 -0.0322 31 1 1.0093 -2.6356 -0.6641 32 1 1.4574 -2.5343 -2.4503 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709503990.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:54 Heat of formation + Delta-G solvation = -106.004203 kcal Electronic energy + Delta-G solvation = -14642.616688 eV Core-core repulsion = 12181.581230 eV Total energy + Delta-G solvation = -2461.035458 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.93888 -38.59473 -37.21414 -36.09665 -34.29848 -30.81604 -27.50129 -25.86268 -24.24873 -23.08430 -22.05795 -20.46658 -18.85950 -18.67673 -17.49095 -16.89119 -16.46973 -15.82578 -15.30328 -14.85980 -14.50884 -14.18929 -13.94223 -13.37366 -13.14856 -12.87835 -12.77532 -12.64194 -12.43566 -12.21650 -11.87195 -11.83214 -11.55085 -11.37287 -11.16884 -10.91806 -10.76912 -10.55483 -8.20248 -6.32238 1.24916 1.40023 1.40292 1.53941 2.16387 2.40503 2.90098 3.12958 3.63246 3.80650 3.92242 4.17309 4.28873 4.39728 4.53232 4.72225 4.81358 4.85897 4.90307 5.02537 5.09071 5.15284 5.27324 5.28472 5.35291 5.51013 5.59162 5.71453 5.83937 6.22015 6.85885 7.01596 7.37452 8.91755 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.045785 B = 0.008054 C = 0.007839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.400923 B = 3475.818618 C = 3571.221436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.021 4.021 3 C -0.085 4.085 4 C 0.024 3.976 5 C -0.540 4.540 6 H 0.067 0.933 7 C -0.004 4.004 8 N -0.936 5.936 9 Si 0.967 3.033 10 H -0.257 1.257 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.497 3.503 14 O -0.555 6.555 15 O -0.502 6.502 16 C -0.148 4.148 17 C -0.185 4.185 18 C -0.174 4.174 19 H 0.065 0.935 20 H 0.037 0.963 21 H 0.087 0.913 22 H 0.065 0.935 23 H 0.081 0.919 24 H -0.001 1.001 25 H -0.025 1.025 26 H 0.262 0.738 27 H 0.417 0.583 28 H 0.135 0.865 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.035 -10.113 -9.914 14.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.022 4.022 3 C -0.122 4.122 4 C -0.013 4.013 5 C -0.578 4.578 6 H 0.085 0.915 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.791 3.209 10 H -0.181 1.181 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.342 3.658 14 O -0.445 6.445 15 O -0.315 6.315 16 C -0.166 4.166 17 C -0.222 4.222 18 C -0.211 4.211 19 H 0.084 0.916 20 H 0.056 0.944 21 H 0.106 0.894 22 H 0.083 0.917 23 H 0.100 0.900 24 H 0.017 0.983 25 H -0.006 1.006 26 H 0.071 0.929 27 H 0.278 0.722 28 H 0.153 0.847 29 H 0.134 0.866 30 H 0.117 0.883 31 H 0.097 0.903 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.637 -9.987 -9.905 14.528 hybrid contribution 0.149 0.626 1.366 1.510 sum 3.785 -9.361 -8.539 13.223 Atomic orbital electron populations 1.21727 0.91790 1.02358 1.02543 1.20292 0.96997 0.95846 0.89032 1.21552 1.00527 0.90544 0.99611 1.19086 0.95263 0.94568 0.92378 1.21729 1.31365 0.97386 1.07284 0.91525 1.26044 0.95286 1.03706 0.95103 1.70142 1.38318 1.37654 1.11517 0.85373 0.78240 0.78808 0.78479 1.18069 1.20404 1.20652 1.23708 0.80025 0.74875 0.87234 1.90643 1.57920 1.48094 1.47874 1.84604 1.25325 1.73197 1.48390 1.22231 1.05487 0.91504 0.97394 1.23531 0.92886 1.01496 1.04248 1.23084 0.98030 0.96371 1.03643 0.91588 0.94418 0.89409 0.91655 0.90038 0.98274 1.00620 0.92901 0.72203 0.84715 0.86596 0.88251 0.90315 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 7.25 71.98 0.52 -3.88 16 2 C -0.02 -0.71 0.60 -52.93 -0.03 -0.74 16 3 C -0.08 -3.42 4.13 30.60 0.13 -3.29 16 4 C 0.02 1.28 4.37 29.85 0.13 1.41 16 5 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 8 N -0.94 -58.56 13.29 21.45 0.28 -58.28 16 9 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 10 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 C 0.50 18.64 4.54 71.24 0.32 18.96 16 14 O -0.55 -24.22 16.74 21.99 0.37 -23.85 16 15 O -0.50 -15.55 10.67 -51.42 -0.55 -16.10 16 16 C -0.15 -3.79 5.15 -10.79 -0.06 -3.85 16 17 C -0.19 -4.19 9.43 30.59 0.29 -3.90 16 18 C -0.17 -3.79 9.50 30.60 0.29 -3.50 16 19 H 0.07 2.08 7.25 -2.39 -0.02 2.06 16 20 H 0.04 1.58 6.39 -2.39 -0.02 1.56 16 21 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 22 H 0.06 2.59 8.11 -2.39 -0.02 2.57 16 23 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 24 H 0.00 -0.06 6.43 -2.39 -0.02 -0.08 16 25 H -0.02 -1.47 7.22 -2.39 -0.02 -1.49 16 26 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 27 H 0.42 9.27 9.10 -74.06 -0.67 8.60 16 28 H 0.14 2.97 8.11 -2.39 -0.02 2.95 16 29 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.10 2.47 4.94 -2.39 -0.01 2.46 16 31 H 0.08 1.94 7.61 -2.39 -0.02 1.92 16 32 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -71.49 264.88 4.86 -66.62 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.44 Total: 14.15 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 2.29 Total: -29.18 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.28 Total: -58.28 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -0.18 Total: -39.95 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -71.49 4.86 -66.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709503990.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.380 kcal (2) G-P(sol) polarization free energy of solvation -71.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds