Wall clock time and date at job start Mon Mar 30 2020 02:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.53002 * 109.46977 * 299.99541 * 3 2 1 5 5 C 1.50696 * 109.47303 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99822 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00335 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00296 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47086 * 59.99480 * 9 7 5 11 11 H 1.48494 * 109.47288 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46819 * 299.99776 * 9 7 5 13 13 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 14 14 O 1.20826 * 119.99685 * 0.02562 * 13 2 1 15 15 O 1.34232 * 120.00079 * 179.97438 * 13 2 1 16 16 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 17 17 C 1.53007 * 117.50113 * 128.74620 * 16 2 1 18 18 C 1.53004 * 117.49661 * 60.08572 * 16 2 1 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 23 23 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 24 24 H 1.08996 * 109.47407 * 300.00489 * 4 3 2 25 25 H 1.09004 * 109.46733 * 59.99806 * 4 3 2 26 26 H 0.97000 * 120.00540 * 180.02562 * 8 7 5 27 27 H 0.96708 * 116.99537 * 180.02562 * 15 13 2 28 28 H 1.08997 * 115.55361 * 274.42230 * 16 2 1 29 29 H 1.09002 * 117.49299 * 0.02562 * 17 16 2 30 30 H 1.08991 * 117.49723 * 145.02362 * 17 16 2 31 31 H 1.08992 * 117.50066 * 214.97965 * 18 16 2 32 32 H 1.09000 * 117.49551 * 0.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5301 2.1638 -1.2493 5 6 2.0329 3.5844 -1.2497 6 1 2.6544 3.9374 -0.4401 7 6 1.6995 4.4334 -2.2836 8 7 0.9431 4.0033 -3.2698 9 14 2.3234 6.1942 -2.2845 10 1 3.8084 6.1931 -2.2856 11 1 1.8284 6.8941 -3.4969 12 1 1.8298 6.8947 -1.0716 13 6 2.0324 -0.7105 -1.2304 14 8 1.2472 -1.1693 -2.0259 15 8 3.3521 -0.8326 -1.4430 16 6 2.0400 -0.7211 1.2493 17 6 3.0764 -1.8293 1.0518 18 6 1.6374 -2.1857 1.4334 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.6767 1.9563 0.8899 23 1 3.1300 1.4425 0.0005 24 1 1.8934 1.6499 -2.1393 25 1 0.4400 2.1637 -1.2494 26 1 0.7089 4.6005 -3.9974 27 1 3.6263 -1.2961 -2.2463 28 1 2.1253 -0.1063 2.1452 29 1 3.3951 -2.0442 0.0318 30 1 3.8431 -1.9436 1.8179 31 1 1.4582 -2.5344 2.4504 32 1 1.0095 -2.6355 0.6643 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709503992.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:56 Heat of formation + Delta-G solvation = -84.971923 kcal Electronic energy + Delta-G solvation = -14641.672712 eV Core-core repulsion = 12181.549281 eV Total energy + Delta-G solvation = -2460.123430 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.52969 -37.32525 -35.79379 -34.39657 -32.36828 -28.97267 -25.86589 -24.05899 -22.79571 -22.10442 -20.41518 -19.09543 -17.42953 -16.73365 -15.94468 -15.42189 -14.61993 -14.43774 -13.83575 -13.41121 -12.96333 -12.42395 -12.28105 -11.81759 -11.60531 -11.38440 -11.11623 -10.94058 -10.74573 -10.70107 -10.63527 -10.23820 -9.99858 -9.87199 -9.58874 -9.23759 -9.04685 -8.33325 -5.98574 -4.01896 2.72319 3.33858 3.38355 3.40517 3.46634 3.94433 4.45928 4.79291 4.99601 5.04730 5.35649 5.37024 5.55426 5.69413 5.75487 5.83637 5.98533 6.17230 6.23535 6.31145 6.41549 6.52311 6.65256 6.75610 6.93219 7.03089 7.65489 7.77914 7.99360 8.36637 8.41000 9.04657 9.61937 11.12469 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.045781 B = 0.008054 C = 0.007839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.455223 B = 3475.606966 C = 3570.888708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.021 4.021 3 C -0.098 4.098 4 C 0.018 3.982 5 C -0.522 4.522 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.500 3.500 14 O -0.519 6.519 15 O -0.509 6.509 16 C -0.137 4.137 17 C -0.187 4.187 18 C -0.188 4.188 19 H 0.053 0.947 20 H 0.076 0.924 21 H 0.066 0.934 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.011 0.989 25 H 0.024 0.976 26 H 0.261 0.739 27 H 0.399 0.601 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.853 -10.220 7.873 13.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.022 4.022 3 C -0.136 4.136 4 C -0.019 4.019 5 C -0.560 4.560 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.343 3.657 14 O -0.407 6.407 15 O -0.320 6.320 16 C -0.155 4.155 17 C -0.224 4.224 18 C -0.225 4.225 19 H 0.072 0.928 20 H 0.095 0.905 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.030 0.970 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.257 0.743 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.421 -10.081 7.842 12.999 hybrid contribution 0.511 0.715 -0.667 1.103 sum 2.932 -9.367 7.175 12.158 Atomic orbital electron populations 1.21765 0.91543 1.01877 1.03531 1.20320 0.97058 0.97330 0.87483 1.21774 1.00641 0.89062 1.02104 1.19215 0.96874 0.94787 0.90985 1.21162 1.31572 0.96224 1.07041 0.92601 1.25031 0.95179 0.98651 0.95573 1.69967 1.36727 1.35974 1.10577 0.86656 0.79197 0.84770 0.77363 1.20247 1.21297 1.20203 1.23384 0.79569 0.75479 0.87305 1.90664 1.56925 1.46360 1.46752 1.84653 1.26838 1.73318 1.47169 1.22291 1.03819 0.90608 0.98772 1.23465 0.92121 1.02813 1.04003 1.23037 0.98627 0.98339 1.02491 0.92801 0.90473 0.91490 0.91628 0.91844 0.97038 0.95801 0.92916 0.74320 0.86617 0.87174 0.88909 0.88790 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 7.25 37.16 0.27 -1.98 16 2 C -0.02 -0.37 0.60 -155.66 -0.09 -0.46 16 3 C -0.10 -2.01 4.13 -26.73 -0.11 -2.12 16 4 C 0.02 0.47 4.37 -27.88 -0.12 0.35 16 5 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -27.29 13.29 55.43 0.74 -26.56 16 9 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.50 9.32 4.54 36.00 0.16 9.48 16 14 O -0.52 -11.01 16.74 -18.75 -0.31 -11.33 16 15 O -0.51 -8.01 10.67 -39.26 -0.42 -8.43 16 16 C -0.14 -1.94 5.14 -90.61 -0.47 -2.40 16 17 C -0.19 -2.40 9.44 -26.69 -0.25 -2.65 16 18 C -0.19 -2.33 9.50 -26.69 -0.25 -2.58 16 19 H 0.05 0.85 7.25 -51.93 -0.38 0.48 16 20 H 0.08 1.55 6.39 -51.93 -0.33 1.22 16 21 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 22 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 23 H 0.06 1.29 8.11 -51.93 -0.42 0.87 16 24 H 0.01 0.32 7.22 -51.93 -0.37 -0.05 16 25 H 0.02 0.65 6.43 -51.93 -0.33 0.32 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.40 4.53 9.10 45.56 0.41 4.94 16 28 H 0.12 1.50 8.11 -51.93 -0.42 1.08 16 29 H 0.11 1.48 4.94 -51.93 -0.26 1.23 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.09 1.22 7.61 -51.93 -0.40 0.82 16 LS Contribution 264.88 15.07 3.99 3.99 Total: -1.00 -32.62 264.88 -6.03 -38.65 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.73 Total: 2.86 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -1.28 Total: -15.95 kcal Atomic # 7 Polarization: -27.29 SS G_CDS: 0.74 Total: -26.56 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.73 Total: -19.76 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.62 -6.03 -38.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709503992.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.323 kcal (2) G-P(sol) polarization free energy of solvation -32.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds