Wall clock time and date at job start Mon Mar 30 2020 02:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.50497 * 2 1 4 4 C 1.53370 * 109.53244 * 239.90343 * 2 1 3 5 5 C 1.51510 * 108.09389 * 187.78425 * 4 2 1 6 6 O 1.20765 * 121.20995 * 228.39742 * 5 4 2 7 7 C 1.51508 * 117.57438 * 48.41741 * 5 4 2 8 8 H 1.09000 * 109.77534 * 191.90759 * 7 5 4 9 9 C 1.53001 * 109.73530 * 71.23321 * 7 5 4 10 10 C 1.50694 * 109.47168 * 66.35893 * 9 7 5 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 7 12 12 C 1.37885 * 119.99902 * 179.97438 * 10 9 7 13 13 N 1.31516 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99854 * 179.72538 * 12 10 9 15 15 H 1.48504 * 109.47032 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46816 * 120.00323 * 14 12 10 17 17 H 1.48495 * 109.46630 * 240.00111 * 14 12 10 18 18 C 1.53356 * 108.09354 * 311.58256 * 7 5 4 19 19 H 1.09000 * 109.50318 * 172.23659 * 18 7 5 20 20 C 1.52999 * 109.50587 * 292.31040 * 18 7 5 21 21 O 1.42889 * 109.28243 * 52.25843 * 18 7 5 22 22 H 1.09000 * 109.46721 * 299.91679 * 1 2 3 23 23 H 1.08997 * 109.47455 * 59.91463 * 1 2 3 24 24 H 1.08996 * 109.47145 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.73696 * 307.43111 * 4 2 1 26 26 H 1.08997 * 109.73612 * 68.08313 * 4 2 1 27 27 H 1.08998 * 109.46837 * 306.35914 * 9 7 5 28 28 H 1.09002 * 109.46926 * 186.35718 * 9 7 5 29 29 H 0.97001 * 119.99646 * 180.02562 * 13 12 10 30 30 H 1.09010 * 109.46685 * 60.00418 * 20 18 7 31 31 H 1.09004 * 109.47156 * 179.97438 * 20 18 7 32 32 H 1.08999 * 109.47583 * 300.00662 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0428 -0.7248 -1.2506 5 6 3.5449 -0.8767 -1.1237 6 8 4.2829 -0.5784 -2.0318 7 6 4.0872 -1.4170 0.1838 8 1 5.1677 -1.2780 0.2204 9 6 3.7533 -2.9052 0.3060 10 6 4.5037 -3.6766 -0.7489 11 1 5.1534 -3.1575 -1.4379 12 6 4.3608 -5.0453 -0.8344 13 7 3.5692 -5.6775 0.0043 14 14 5.2850 -6.0007 -2.1469 15 1 6.0978 -5.0624 -2.9620 16 1 6.1782 -6.9945 -1.4990 17 1 4.3140 -6.7045 -3.0226 18 6 3.4261 -0.6420 1.3301 19 1 3.6934 -1.1015 2.2817 20 6 3.9089 0.8097 1.3106 21 8 2.0071 -0.6752 1.1655 22 1 -0.3633 0.5125 0.8907 23 1 -0.3634 0.5151 -0.8892 24 1 -0.3633 -1.0276 -0.0005 25 1 1.5781 -1.7082 -1.3225 26 1 1.8049 -0.1395 -2.1387 27 1 2.6818 -3.0496 0.1684 28 1 4.0444 -3.2629 1.2937 29 1 3.4690 -6.6405 -0.0556 30 1 3.6401 1.2691 0.3593 31 1 3.4383 1.3601 2.1253 32 1 4.9917 0.8342 1.4327 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709992833.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:30 Heat of formation + Delta-G solvation = -103.858941 kcal Electronic energy + Delta-G solvation = -14861.213318 eV Core-core repulsion = 12400.270885 eV Total energy + Delta-G solvation = -2460.942433 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.03588 -37.42915 -34.04986 -32.81989 -31.62920 -29.46991 -27.86632 -25.43096 -22.49483 -21.94406 -20.99770 -18.10298 -16.48367 -16.22071 -15.75453 -15.04061 -14.70126 -14.41254 -13.90305 -13.32333 -13.00248 -12.55667 -12.31950 -12.18978 -11.85978 -11.72799 -11.56160 -11.29512 -11.22314 -11.00966 -10.58273 -10.51097 -9.97531 -9.69837 -9.29802 -8.91597 -8.69698 -8.35213 -6.03923 -4.07016 2.68827 3.30484 3.38137 3.45256 3.98881 4.44584 4.67476 5.02127 5.07399 5.25526 5.31432 5.35801 5.38821 5.51189 5.64246 5.73592 5.85258 5.95593 6.05111 6.20875 6.23032 6.30984 6.38156 6.54580 6.78218 7.54215 7.58813 7.67999 7.94898 8.18762 8.32905 9.00524 9.58284 11.06549 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.036872 B = 0.009575 C = 0.009381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.211486 B = 2923.482407 C = 2983.960641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.091 3.909 3 H 0.060 0.940 4 C -0.201 4.201 5 C 0.385 3.615 6 O -0.471 6.471 7 C -0.158 4.158 8 H 0.090 0.910 9 C 0.041 3.959 10 C -0.529 4.529 11 H 0.058 0.942 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.889 3.111 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.095 3.905 19 H 0.111 0.889 20 C -0.189 4.189 21 O -0.365 6.365 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.030 0.970 28 H 0.029 0.971 29 H 0.261 0.739 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.467 11.121 2.148 12.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.033 3.967 3 H 0.078 0.922 4 C -0.239 4.239 5 C 0.261 3.739 6 O -0.345 6.345 7 C -0.177 4.177 8 H 0.108 0.892 9 C 0.004 3.996 10 C -0.567 4.567 11 H 0.076 0.924 12 C -0.141 4.141 13 N -0.530 5.530 14 Si 0.717 3.283 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.209 1.209 18 C 0.037 3.963 19 H 0.128 0.872 20 C -0.246 4.246 21 O -0.284 6.284 22 H 0.081 0.919 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.130 0.870 26 H 0.104 0.896 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.269 11.021 1.837 11.961 hybrid contribution 0.678 -0.643 -0.907 1.302 sum -3.591 10.378 0.930 11.021 Atomic orbital electron populations 1.21762 0.92869 1.03362 1.02018 1.22027 0.95201 0.94878 0.84616 0.92217 1.23046 0.96648 1.04458 0.99728 1.24622 0.90339 0.70615 0.88289 1.90308 1.62506 1.39917 1.41752 1.22799 1.01085 1.01249 0.92563 0.89199 1.19023 0.97904 0.84712 0.97940 1.21340 1.27123 0.92280 1.15924 0.92386 1.24978 0.95297 0.97807 0.95981 1.69975 1.37458 1.08785 1.36802 0.86564 0.79864 0.79983 0.81892 1.19623 1.20887 1.20939 1.22365 0.80437 0.94022 0.99435 0.87154 1.22525 1.02381 0.97656 1.02030 1.87960 1.21385 1.76297 1.42722 0.91868 0.91315 0.91297 0.86976 0.89598 0.95180 0.95266 0.92960 0.92643 0.91780 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.57 37.16 0.36 -1.36 16 2 C 0.09 1.35 2.94 -26.54 -0.08 1.27 16 3 H 0.06 0.80 6.12 -51.93 -0.32 0.48 16 4 C -0.20 -3.45 5.41 -27.29 -0.15 -3.59 16 5 C 0.38 8.02 4.69 -28.24 -0.13 7.88 16 6 O -0.47 -11.04 17.91 5.99 0.11 -10.93 16 7 C -0.16 -3.27 2.10 -91.19 -0.19 -3.46 16 8 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 9 C 0.04 1.04 4.30 -27.89 -0.12 0.92 16 10 C -0.53 -15.06 8.64 -34.44 -0.30 -15.36 16 11 H 0.06 1.70 7.66 -52.49 -0.40 1.29 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 13 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 14 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 15 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 18 C 0.10 1.60 3.30 -26.55 -0.09 1.51 16 19 H 0.11 1.78 8.14 -51.93 -0.42 1.35 16 20 C -0.19 -2.59 8.69 37.16 0.32 -2.26 16 21 O -0.36 -6.28 9.92 -35.23 -0.35 -6.63 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.11 2.06 7.78 -51.93 -0.40 1.65 16 26 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.03 0.80 7.44 -51.93 -0.39 0.41 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.05 0.77 5.75 -51.92 -0.30 0.47 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 263.40 15.07 3.97 3.97 Total: -1.00 -31.56 263.40 -5.78 -37.34 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -4.75 Total: -2.30 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -0.47 Total: -12.78 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.74 Total: -25.76 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.24 Total: -17.56 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.56 -5.78 -37.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709992833.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.518 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds