Wall clock time and date at job start Mon Mar 30 2020 02:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 113.99833 * 2 1 4 4 C 1.53783 * 113.61270 * 150.00202 * 3 2 1 5 5 C 1.53773 * 87.08164 * 89.19794 * 4 3 2 6 6 C 1.50700 * 113.61338 * 139.97961 * 5 4 3 7 7 O 1.20758 * 120.00016 * 334.99968 * 6 5 4 8 8 C 1.50701 * 120.00201 * 154.99945 * 6 5 4 9 9 H 1.09002 * 109.47060 * 35.00115 * 8 6 5 10 10 C 1.52997 * 109.47212 * 275.00060 * 8 6 5 11 11 C 1.50699 * 109.47269 * 154.99968 * 8 6 5 12 12 H 1.08000 * 119.99792 * 0.02562 * 11 8 6 13 13 C 1.37878 * 119.99902 * 179.97438 * 11 8 6 14 14 N 1.31515 * 120.00126 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99745 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47438 * 0.02562 * 15 13 11 17 17 H 1.48491 * 109.47045 * 120.00577 * 15 13 11 18 18 H 1.48501 * 109.46950 * 240.00369 * 15 13 11 19 19 C 1.53775 * 87.08453 * 25.43316 * 5 4 3 20 20 H 1.08998 * 109.46885 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47074 * 299.99915 * 1 2 3 22 22 H 1.08999 * 109.46985 * 60.00148 * 1 2 3 23 23 H 1.09001 * 112.84711 * 18.80542 * 3 2 1 24 24 H 1.09001 * 113.61007 * 334.64602 * 4 3 2 25 25 H 1.08998 * 113.60938 * 203.75104 * 4 3 2 26 26 H 1.08998 * 113.61824 * 270.79488 * 5 4 3 27 27 H 1.08998 * 109.47533 * 59.99628 * 10 8 6 28 28 H 1.08996 * 109.47853 * 179.97438 * 10 8 6 29 29 H 1.09002 * 109.47153 * 299.99998 * 10 8 6 30 30 H 0.96999 * 120.00073 * 179.97438 * 14 13 11 31 31 H 1.08997 * 113.61708 * 89.11148 * 19 5 4 32 32 H 1.09006 * 113.61654 * 220.02073 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3756 1.3720 0.7045 5 6 4.0063 1.0353 -0.6570 6 6 5.2712 1.8030 -0.9426 7 8 5.4640 2.8691 -0.4092 8 6 6.2956 1.2403 -1.8940 9 1 5.7900 0.7009 -2.6949 10 6 7.2208 0.2834 -1.1396 11 6 7.1077 2.3659 -2.4811 12 1 6.9028 3.3866 -2.1937 13 6 8.1130 2.0925 -3.3842 14 7 8.3628 0.8495 -3.7338 15 14 9.1201 3.4876 -4.1114 16 1 8.6445 4.7816 -3.5593 17 1 10.5513 3.2980 -3.7644 18 1 8.9652 3.4924 -5.5883 19 6 2.7532 1.6511 -1.3014 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.3137 2.0789 0.3238 24 1 3.5175 0.5949 1.4556 25 1 3.6304 2.3668 1.0698 26 1 4.1107 -0.0346 -0.8372 27 1 6.6335 -0.5307 -0.7149 28 1 7.9615 -0.1240 -1.8277 29 1 7.7265 0.8228 -0.3386 30 1 9.0697 0.6572 -4.3695 31 1 2.8379 2.7223 -1.4844 32 1 2.3927 1.0994 -2.1696 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714535106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:00 Heat of formation + Delta-G solvation = -69.867766 kcal Electronic energy + Delta-G solvation = -14216.851560 eV Core-core repulsion = 11757.383096 eV Total energy + Delta-G solvation = -2459.468465 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.85116 -37.81976 -35.27036 -33.69996 -30.52104 -27.09982 -25.70637 -25.51818 -25.09470 -22.28071 -19.70877 -18.35113 -16.46851 -16.17346 -15.56446 -15.21113 -15.14179 -14.41397 -13.87645 -13.40765 -13.17502 -12.58734 -12.24830 -11.89627 -11.77768 -11.37296 -11.32364 -11.03695 -10.72764 -10.60333 -10.40786 -10.23707 -10.12242 -9.99532 -9.47745 -8.92676 -8.41699 -8.07316 -6.00091 -4.05211 3.05106 3.32109 3.39671 3.46979 3.67331 4.44741 4.74550 4.82160 4.94878 5.17399 5.22707 5.30951 5.32787 5.43614 5.53759 5.68242 5.96732 6.01084 6.18779 6.29936 6.48823 6.64249 6.80758 6.97117 7.07217 7.24388 7.57314 7.81325 8.04375 8.30138 8.76349 9.00478 9.59546 11.06505 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.056847 B = 0.006795 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.432895 B = 4119.461486 C = 4193.956094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.062 3.938 4 C -0.127 4.127 5 C -0.161 4.161 6 C 0.374 3.626 7 O -0.470 6.470 8 C -0.001 4.001 9 H 0.050 0.950 10 C -0.127 4.127 11 C -0.505 4.505 12 H 0.066 0.934 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.896 3.104 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.135 4.135 20 H 0.084 0.916 21 H 0.040 0.960 22 H 0.041 0.959 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.014 0.986 28 H 0.092 0.908 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.092 0.908 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.651 -1.798 5.626 13.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.004 3.996 4 C -0.164 4.164 5 C -0.180 4.180 6 C 0.250 3.750 7 O -0.344 6.344 8 C -0.020 4.020 9 H 0.068 0.932 10 C -0.185 4.185 11 C -0.543 4.543 12 H 0.084 0.916 13 C -0.141 4.141 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.173 4.173 20 H 0.103 0.897 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.091 0.909 24 H 0.094 0.906 25 H 0.119 0.881 26 H 0.128 0.872 27 H 0.033 0.967 28 H 0.111 0.889 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.319 -1.497 5.796 13.696 hybrid contribution 0.375 0.708 -0.555 0.974 sum -11.944 -0.789 5.240 13.067 Atomic orbital electron populations 1.22787 0.81329 1.02559 0.99858 1.87898 1.19351 1.26841 1.94593 1.23125 0.94475 0.84683 0.97271 1.23148 0.93452 1.03257 0.96561 1.23197 0.95278 1.02127 0.97381 1.25051 0.86393 0.84548 0.79016 1.90194 1.76964 1.21879 1.45320 1.19218 0.92777 0.96667 0.93364 0.93202 1.21628 1.00467 0.96750 0.99650 1.21151 1.16336 0.93060 1.23754 0.91559 1.24953 0.97126 0.95690 0.96366 1.69883 1.31953 1.17775 1.33670 0.86459 0.79910 0.82574 0.78670 1.19669 1.20985 1.21028 1.23263 0.94852 1.01581 0.97607 0.89736 0.94174 0.94040 0.90947 0.90647 0.88074 0.87190 0.96712 0.88899 0.95097 0.93013 0.88989 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.85 101.05 1.10 1.40 16 2 O -0.37 -5.07 10.64 -35.23 -0.37 -5.44 16 3 C 0.06 0.85 4.37 -25.92 -0.11 0.74 16 4 C -0.13 -1.96 7.37 -25.92 -0.19 -2.15 16 5 C -0.16 -2.87 4.02 -90.97 -0.37 -3.24 16 6 C 0.37 8.43 5.67 -29.03 -0.16 8.26 16 7 O -0.47 -11.65 15.52 6.00 0.09 -11.56 16 8 C 0.00 -0.04 2.57 -92.92 -0.24 -0.27 16 9 H 0.05 1.31 8.14 -51.93 -0.42 0.88 16 10 C -0.13 -3.09 8.95 37.16 0.33 -2.76 16 11 C -0.50 -14.43 8.33 -34.44 -0.29 -14.72 16 12 H 0.07 1.97 7.03 -52.49 -0.37 1.60 16 13 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 14 N -0.89 -25.56 11.32 55.43 0.63 -24.93 16 15 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C -0.14 -2.10 7.46 -25.92 -0.19 -2.29 16 20 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 22 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.07 0.84 7.87 -51.93 -0.41 0.43 16 24 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.10 1.61 7.39 -51.93 -0.38 1.23 16 26 H 0.11 1.93 8.14 -51.93 -0.42 1.50 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.09 1.44 8.09 -51.93 -0.42 1.02 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 271.26 15.07 4.09 4.09 Total: -1.00 -30.68 271.26 -5.64 -36.32 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -4.84 Total: -1.88 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -0.22 Total: -13.45 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.63 Total: -24.93 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.28 Total: -17.00 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.68 -5.64 -36.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714535106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.549 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds