Wall clock time and date at job start Mon Mar 30 2020 02:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 113.99833 * 2 1 4 4 C 1.53783 * 113.61270 * 150.00202 * 3 2 1 5 5 C 1.53773 * 87.08164 * 89.19794 * 4 3 2 6 6 C 1.50700 * 113.61338 * 139.97961 * 5 4 3 7 7 O 1.20758 * 120.00016 * 334.99968 * 6 5 4 8 8 C 1.50701 * 120.00201 * 154.99945 * 6 5 4 9 9 H 1.09002 * 109.47060 * 35.00115 * 8 6 5 10 10 C 1.52997 * 109.47212 * 275.00060 * 8 6 5 11 11 C 1.50699 * 109.47269 * 154.99968 * 8 6 5 12 12 H 1.08000 * 119.99792 * 0.02562 * 11 8 6 13 13 C 1.37878 * 119.99902 * 179.97438 * 11 8 6 14 14 N 1.31515 * 120.00126 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99745 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47438 * 0.02562 * 15 13 11 17 17 H 1.48491 * 109.47045 * 120.00577 * 15 13 11 18 18 H 1.48501 * 109.46950 * 240.00369 * 15 13 11 19 19 C 1.53775 * 87.08453 * 25.43316 * 5 4 3 20 20 H 1.08998 * 109.46885 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47074 * 299.99915 * 1 2 3 22 22 H 1.08999 * 109.46985 * 60.00148 * 1 2 3 23 23 H 1.09001 * 112.84711 * 18.80542 * 3 2 1 24 24 H 1.09001 * 113.61007 * 334.64602 * 4 3 2 25 25 H 1.08998 * 113.60938 * 203.75104 * 4 3 2 26 26 H 1.08998 * 113.61824 * 270.79488 * 5 4 3 27 27 H 1.08998 * 109.47533 * 59.99628 * 10 8 6 28 28 H 1.08996 * 109.47853 * 179.97438 * 10 8 6 29 29 H 1.09002 * 109.47153 * 299.99998 * 10 8 6 30 30 H 0.96999 * 120.00073 * 179.97438 * 14 13 11 31 31 H 1.08997 * 113.61708 * 89.11148 * 19 5 4 32 32 H 1.09006 * 113.61654 * 220.02073 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3756 1.3720 0.7045 5 6 4.0063 1.0353 -0.6570 6 6 5.2712 1.8030 -0.9426 7 8 5.4640 2.8691 -0.4092 8 6 6.2956 1.2403 -1.8940 9 1 5.7900 0.7009 -2.6949 10 6 7.2208 0.2834 -1.1396 11 6 7.1077 2.3659 -2.4811 12 1 6.9028 3.3866 -2.1937 13 6 8.1130 2.0925 -3.3842 14 7 8.3628 0.8495 -3.7338 15 14 9.1201 3.4876 -4.1114 16 1 8.6445 4.7816 -3.5593 17 1 10.5513 3.2980 -3.7644 18 1 8.9652 3.4924 -5.5883 19 6 2.7532 1.6511 -1.3014 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.3137 2.0789 0.3238 24 1 3.5175 0.5949 1.4556 25 1 3.6304 2.3668 1.0698 26 1 4.1107 -0.0346 -0.8372 27 1 6.6335 -0.5307 -0.7149 28 1 7.9615 -0.1240 -1.8277 29 1 7.7265 0.8228 -0.3386 30 1 9.0697 0.6572 -4.3695 31 1 2.8379 2.7223 -1.4844 32 1 2.3927 1.0994 -2.1696 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714535106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:00 Heat of formation + Delta-G solvation = -88.893516 kcal Electronic energy + Delta-G solvation = -14217.676579 eV Core-core repulsion = 11757.383096 eV Total energy + Delta-G solvation = -2460.293483 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.27384 -39.27955 -36.47059 -35.77921 -32.59890 -28.17912 -27.31680 -26.88317 -26.68065 -24.01860 -21.15399 -19.87625 -18.36581 -17.72813 -16.98112 -16.77993 -16.17866 -16.01167 -15.31942 -15.14919 -14.67037 -14.41434 -13.54063 -13.42038 -13.15109 -12.95376 -12.92286 -12.66437 -12.56239 -12.36531 -12.18129 -12.10054 -11.60375 -11.36976 -11.04080 -10.55891 -10.49415 -9.87910 -8.15405 -6.28758 1.27567 1.37823 1.39867 1.52663 2.40576 2.72127 3.11951 3.44419 3.56501 3.66761 3.86491 4.20626 4.37898 4.59257 4.62417 4.71223 4.75032 4.77743 4.82388 4.89972 4.98229 5.01438 5.06468 5.13557 5.24647 5.50972 5.69537 5.94093 6.21724 6.30975 6.77029 6.95623 7.39248 8.89611 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.056847 B = 0.006795 C = 0.006675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.432895 B = 4119.461486 C = 4193.956094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.389 6.389 3 C 0.081 3.919 4 C -0.124 4.124 5 C -0.164 4.164 6 C 0.377 3.623 7 O -0.498 6.498 8 C -0.013 4.013 9 H 0.038 0.962 10 C -0.117 4.117 11 C -0.532 4.532 12 H 0.046 0.954 13 C 0.017 3.983 14 N -0.912 5.912 15 Si 0.956 3.044 16 H -0.276 1.276 17 H -0.276 1.276 18 H -0.273 1.273 19 C -0.135 4.135 20 H 0.098 0.902 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.101 0.899 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.021 0.979 30 H 0.265 0.735 31 H 0.087 0.913 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.952 -1.926 5.941 15.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.308 6.308 3 C 0.023 3.977 4 C -0.161 4.161 5 C -0.183 4.183 6 C 0.256 3.744 7 O -0.374 6.374 8 C -0.032 4.032 9 H 0.056 0.944 10 C -0.175 4.175 11 C -0.570 4.570 12 H 0.064 0.936 13 C -0.182 4.182 14 N -0.551 5.551 15 Si 0.782 3.218 16 H -0.201 1.201 17 H -0.201 1.201 18 H -0.198 1.198 19 C -0.173 4.173 20 H 0.117 0.883 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.119 0.881 24 H 0.103 0.897 25 H 0.113 0.887 26 H 0.132 0.868 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.633 -1.644 6.108 15.029 hybrid contribution 0.764 0.700 -0.671 1.234 sum -12.870 -0.944 5.437 14.003 Atomic orbital electron populations 1.23043 0.79169 1.04002 1.01075 1.87870 1.21734 1.26683 1.94548 1.22921 0.94189 0.85660 0.94938 1.23135 0.94420 1.03189 0.95373 1.23188 0.93377 1.01612 1.00140 1.25133 0.87384 0.84283 0.77620 1.90176 1.77819 1.23159 1.46276 1.19269 0.93703 0.96138 0.94060 0.94395 1.21466 1.00092 0.97281 0.98694 1.21328 1.17696 0.93041 1.24912 0.93600 1.25666 0.97928 0.98056 0.96547 1.69972 1.32274 1.19095 1.33796 0.85532 0.78555 0.79439 0.78315 1.20130 1.20117 1.19800 1.23308 0.93722 1.01209 0.99058 0.88322 0.92582 0.93164 0.88141 0.89687 0.88659 0.86764 0.93546 0.91105 0.95969 0.92606 0.89453 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.85 113.37 1.23 1.60 16 2 O -0.39 -9.55 10.64 -148.98 -1.58 -11.14 16 3 C 0.08 1.99 4.37 31.12 0.14 2.13 16 4 C -0.12 -3.60 7.37 31.12 0.23 -3.37 16 5 C -0.16 -5.70 4.02 -11.02 -0.04 -5.74 16 6 C 0.38 17.14 5.67 29.10 0.17 17.30 16 7 O -0.50 -25.09 15.52 -1.44 -0.02 -25.11 16 8 C -0.01 -0.66 2.57 -12.29 -0.03 -0.69 16 9 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 10 C -0.12 -5.75 8.95 71.98 0.64 -5.11 16 11 C -0.53 -31.07 8.33 25.60 0.21 -30.85 16 12 H 0.05 2.81 7.03 -2.91 -0.02 2.79 16 13 C 0.02 0.97 5.30 84.65 0.45 1.42 16 14 N -0.91 -52.49 11.32 21.45 0.24 -52.25 16 15 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 16 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 18 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 19 C -0.14 -3.97 7.46 31.12 0.23 -3.74 16 20 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 22 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.10 1.95 7.87 -2.39 -0.02 1.93 16 24 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.10 2.90 7.39 -2.39 -0.02 2.89 16 26 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 29 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.09 2.65 8.09 -2.39 -0.02 2.63 16 32 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 Total: -1.00 -65.65 271.26 4.97 -60.68 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.08 Total: 7.75 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 3.22 Total: -27.06 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.24 Total: -52.25 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -1.61 Total: -36.25 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -65.65 4.97 -60.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714535106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.216 kcal (2) G-P(sol) polarization free energy of solvation -65.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds