Wall clock time and date at job start Mon Mar 30 2020 02:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46995 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99846 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99940 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00035 * 180.02562 * 12 11 10 15 15 H 1.09006 * 115.55159 * 325.66383 * 14 12 11 16 16 C 1.53001 * 117.50253 * 111.37491 * 14 12 11 17 17 C 1.52997 * 60.00080 * 107.48888 * 16 14 12 18 18 H 1.09004 * 117.49878 * 107.49368 * 17 16 14 19 19 C 1.53001 * 117.51726 * 252.52075 * 17 16 14 20 20 N 1.46906 * 109.47165 * 243.62696 * 19 17 16 21 21 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 23 23 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 24 24 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 25 25 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 26 26 H 0.96998 * 120.00192 * 0.02562 * 11 10 9 27 27 H 1.09002 * 117.50200 * 214.97795 * 16 14 12 28 28 H 1.08997 * 117.49878 * 359.97438 * 16 14 12 29 29 H 1.08997 * 109.47225 * 3.62797 * 19 17 16 30 30 H 1.09001 * 109.47470 * 123.63121 * 19 17 16 31 31 H 1.00890 * 111.00150 * 180.02562 * 20 19 17 32 32 H 1.00902 * 110.99904 * 303.95954 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1869 -6.0979 0.0018 13 8 3.3997 -6.0979 0.0014 14 6 1.4334 -7.4030 0.0018 15 1 0.4948 -7.4041 0.5561 16 6 1.5091 -8.2626 -1.2616 17 6 2.2556 -8.6934 0.0025 18 1 1.8577 -9.5434 0.5569 19 6 3.7797 -8.5599 0.0035 20 7 4.3879 -9.8917 0.1248 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6242 -2.5567 0.8904 23 1 0.6248 -2.5571 -0.8896 24 1 2.8720 -3.6043 -0.8895 25 1 2.8721 -3.6042 0.8905 26 1 0.5430 -4.9308 0.0011 27 1 0.6202 -8.8292 -1.5390 28 1 2.1035 -7.8839 -2.0931 29 1 4.1044 -8.0956 -0.9276 30 1 4.0897 -7.9410 0.8455 31 1 5.3949 -9.8304 0.1282 32 1 4.0521 -10.3689 0.9480 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715101354.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:40 Heat of formation + Delta-G solvation = -31.941936 kcal Electronic energy + Delta-G solvation = -13671.159075 eV Core-core repulsion = 11245.627949 eV Total energy + Delta-G solvation = -2425.531126 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.91126 -36.98349 -34.93930 -33.54266 -33.03555 -29.54317 -25.68042 -24.81054 -23.27386 -21.40056 -20.89824 -19.73042 -17.17190 -16.48610 -16.09936 -15.21139 -15.06152 -14.77680 -14.26853 -13.76648 -13.58289 -13.10580 -12.75540 -12.43208 -12.18067 -11.67263 -11.41058 -11.00806 -10.52746 -10.39419 -10.32525 -10.20031 -9.98614 -9.54847 -8.73937 -8.63629 -8.51765 -8.38515 -6.46116 -4.16256 2.73095 3.41123 3.43275 3.51025 3.62105 3.81885 4.33443 4.49628 4.79489 4.81633 5.00974 5.16361 5.30886 5.32159 5.59988 5.63906 5.87889 5.91018 6.16749 6.19201 6.29455 6.57215 6.79502 7.06415 7.22066 7.32047 7.34768 7.91776 8.06651 8.35590 8.57471 8.77659 9.55807 10.94971 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.070570 B = 0.005071 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.676234 B = 5519.785719 C = 5816.816334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.018 3.982 3 Si 1.071 2.929 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.603 4.603 8 H 0.053 0.947 9 C -0.001 4.001 10 C 0.129 3.871 11 N -0.720 5.720 12 C 0.534 3.466 13 O -0.548 6.548 14 C -0.192 4.192 15 H 0.122 0.878 16 C -0.145 4.145 17 C -0.114 4.114 18 H 0.110 0.890 19 C 0.097 3.903 20 N -0.856 5.856 21 H 0.268 0.732 22 H 0.013 0.987 23 H 0.014 0.986 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.397 0.603 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.341 0.659 32 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.125 -15.984 0.461 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.186 4.186 3 Si 0.899 3.101 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.642 4.642 8 H 0.071 0.929 9 C -0.038 4.038 10 C 0.007 3.993 11 N -0.369 5.369 12 C 0.320 3.680 13 O -0.427 6.427 14 C -0.213 4.213 15 H 0.140 0.860 16 C -0.183 4.183 17 C -0.133 4.133 18 H 0.128 0.872 19 C -0.032 4.032 20 N -0.386 5.386 21 H 0.078 0.922 22 H 0.031 0.969 23 H 0.032 0.968 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.230 0.770 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.153 0.847 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.446 -14.430 -0.240 14.638 hybrid contribution -0.067 -1.255 0.949 1.575 sum 2.379 -15.685 0.710 15.880 Atomic orbital electron populations 1.70805 1.06887 1.30545 1.46322 1.25890 0.96485 1.02823 0.93451 0.83506 0.74871 0.75050 0.76683 1.20689 1.21302 1.21313 1.21885 0.94520 0.91397 1.56370 0.92900 1.19455 0.94871 0.92932 0.96570 1.21558 0.95701 0.81096 1.00942 1.46301 1.10497 1.06457 1.73659 1.19643 0.87557 0.84509 0.76330 1.90652 1.13833 1.87498 1.50708 1.22391 1.02341 0.91071 1.05546 0.86017 1.23025 1.02892 1.01085 0.91265 1.22252 0.94564 0.95425 1.01078 0.87177 1.21437 0.90790 0.88363 1.02645 1.58821 1.11734 1.20914 1.47090 0.92171 0.96855 0.96824 0.92419 0.92448 0.76954 0.87919 0.88209 0.90240 0.93413 0.84705 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.37 13.65 55.43 0.76 -26.61 16 2 C 0.02 0.50 5.46 -17.82 -0.10 0.41 16 3 Si 1.07 25.06 29.90 -169.99 -5.08 19.98 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.60 -17.04 9.11 -34.44 -0.31 -17.36 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.00 -0.02 4.40 -27.88 -0.12 -0.15 16 10 C 0.13 2.79 5.61 -4.04 -0.02 2.77 16 11 N -0.72 -12.61 5.56 -60.29 -0.33 -12.95 16 12 C 0.53 8.98 7.59 -10.99 -0.08 8.90 16 13 O -0.55 -10.84 13.10 5.56 0.07 -10.77 16 14 C -0.19 -2.38 6.19 -91.77 -0.57 -2.95 16 15 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 16 C -0.15 -1.61 9.88 -26.73 -0.26 -1.87 16 17 C -0.11 -1.32 5.95 -90.62 -0.54 -1.86 16 18 H 0.11 1.07 8.13 -51.93 -0.42 0.65 16 19 C 0.10 1.27 5.33 -3.82 -0.02 1.25 16 20 N -0.86 -9.02 9.62 -10.37 -0.10 -9.12 16 21 H 0.27 7.95 7.22 -40.82 -0.29 7.65 16 22 H 0.01 0.34 8.01 -51.93 -0.42 -0.08 16 23 H 0.01 0.35 8.01 -51.93 -0.42 -0.07 16 24 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 26 H 0.40 6.00 8.47 -40.82 -0.35 5.66 16 27 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.10 1.22 8.03 -51.93 -0.42 0.80 16 29 H 0.08 1.20 7.30 -51.93 -0.38 0.82 16 30 H 0.05 0.72 6.92 -51.93 -0.36 0.36 16 31 H 0.34 3.17 9.08 -39.30 -0.36 2.82 16 32 H 0.33 2.92 8.98 -39.29 -0.35 2.56 16 LS Contribution 273.14 15.07 4.12 4.12 Total: -1.00 -31.86 273.14 -7.26 -39.12 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.65 Total: 7.10 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -2.03 Total: -10.86 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: 0.32 Total: -48.68 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.07 Total: -10.77 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.08 Total: 19.98 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.86 -7.26 -39.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715101354.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.178 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds