Wall clock time and date at job start Mon Mar 30 2020 02:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46496 * 109.46995 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99846 * 180.02562 * 11 10 9 13 13 O 1.21282 * 119.99940 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00035 * 180.02562 * 12 11 10 15 15 H 1.09006 * 115.55159 * 325.66383 * 14 12 11 16 16 C 1.53001 * 117.50253 * 111.37491 * 14 12 11 17 17 C 1.52997 * 60.00080 * 107.48888 * 16 14 12 18 18 H 1.09004 * 117.49878 * 107.49368 * 17 16 14 19 19 C 1.53001 * 117.51726 * 252.52075 * 17 16 14 20 20 N 1.46906 * 109.47165 * 243.62696 * 19 17 16 21 21 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 23 23 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 24 24 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 25 25 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 26 26 H 0.96998 * 120.00192 * 0.02562 * 11 10 9 27 27 H 1.09002 * 117.50200 * 214.97795 * 16 14 12 28 28 H 1.08997 * 117.49878 * 359.97438 * 16 14 12 29 29 H 1.08997 * 109.47225 * 3.62797 * 19 17 16 30 30 H 1.09001 * 109.47470 * 123.63121 * 19 17 16 31 31 H 1.00890 * 111.00150 * 180.02562 * 20 19 17 32 32 H 1.00902 * 110.99904 * 303.95954 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1869 -6.0979 0.0018 13 8 3.3997 -6.0979 0.0014 14 6 1.4334 -7.4030 0.0018 15 1 0.4948 -7.4041 0.5561 16 6 1.5091 -8.2626 -1.2616 17 6 2.2556 -8.6934 0.0025 18 1 1.8577 -9.5434 0.5569 19 6 3.7797 -8.5599 0.0035 20 7 4.3879 -9.8917 0.1248 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6242 -2.5567 0.8904 23 1 0.6248 -2.5571 -0.8896 24 1 2.8720 -3.6043 -0.8895 25 1 2.8721 -3.6042 0.8905 26 1 0.5430 -4.9308 0.0011 27 1 0.6202 -8.8292 -1.5390 28 1 2.1035 -7.8839 -2.0931 29 1 4.1044 -8.0956 -0.9276 30 1 4.0897 -7.9410 0.8455 31 1 5.3949 -9.8304 0.1282 32 1 4.0521 -10.3689 0.9480 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715101354.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:40 Heat of formation + Delta-G solvation = -56.266936 kcal Electronic energy + Delta-G solvation = -13672.213886 eV Core-core repulsion = 11245.627949 eV Total energy + Delta-G solvation = -2426.585938 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.19220 -38.17157 -36.66338 -35.06868 -34.39797 -31.41839 -27.12709 -26.12836 -24.84613 -23.10260 -22.00086 -21.06037 -18.98801 -17.98807 -17.21843 -16.66491 -16.41320 -15.99159 -15.63978 -15.42087 -15.02203 -14.69858 -14.16081 -13.75618 -13.70887 -13.42682 -12.89914 -12.33810 -12.30506 -12.12992 -11.88982 -11.41338 -11.22976 -11.05358 -10.67132 -10.60233 -10.12428 -9.53990 -8.74440 -6.45807 1.45919 1.53215 1.60654 1.80754 2.16289 2.55783 2.79521 3.11169 3.41462 3.71827 3.87653 4.06116 4.14239 4.29207 4.31115 4.41718 4.63409 4.64696 4.82242 4.84526 4.98967 5.08181 5.29385 5.31499 5.39961 5.90737 6.10825 6.18088 6.46949 6.58507 6.59715 7.21451 7.34576 8.67887 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.070570 B = 0.005071 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.676234 B = 5519.785719 C = 5816.816334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.031 4.031 3 Si 1.118 2.882 4 H -0.280 1.280 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.625 4.625 8 H 0.049 0.951 9 C 0.006 3.994 10 C 0.149 3.851 11 N -0.717 5.717 12 C 0.528 3.472 13 O -0.582 6.582 14 C -0.195 4.195 15 H 0.153 0.847 16 C -0.133 4.133 17 C -0.113 4.113 18 H 0.139 0.861 19 C 0.103 3.897 20 N -0.852 5.852 21 H 0.259 0.741 22 H 0.006 0.994 23 H 0.006 0.994 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.410 0.590 27 H 0.136 0.864 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.022 0.978 31 H 0.347 0.653 32 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 -17.165 0.553 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.229 4.229 3 Si 0.938 3.062 4 H -0.206 1.206 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.664 4.664 8 H 0.067 0.933 9 C -0.031 4.031 10 C 0.025 3.975 11 N -0.367 5.367 12 C 0.316 3.684 13 O -0.463 6.463 14 C -0.216 4.216 15 H 0.171 0.829 16 C -0.170 4.170 17 C -0.132 4.132 18 H 0.157 0.843 19 C -0.027 4.027 20 N -0.383 5.383 21 H 0.068 0.932 22 H 0.024 0.976 23 H 0.024 0.976 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.246 0.754 27 H 0.154 0.846 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.160 0.840 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.064 -15.662 -0.144 15.798 hybrid contribution 0.084 -0.962 0.913 1.328 sum 2.147 -16.623 0.769 16.779 Atomic orbital electron populations 1.70923 1.07771 1.30094 1.48084 1.27375 0.96587 1.06598 0.92367 0.82923 0.74152 0.71095 0.77999 1.20556 1.19554 1.19531 1.22317 0.94764 0.93107 1.56167 0.93258 1.19302 0.94950 0.93206 0.95640 1.21027 0.94723 0.82158 0.99631 1.46125 1.11065 1.05432 1.74082 1.20476 0.87436 0.85563 0.74888 1.90649 1.15638 1.88081 1.51915 1.22387 1.03150 0.88523 1.07537 0.82934 1.23147 1.03641 1.00053 0.90180 1.22381 0.93313 0.95596 1.01902 0.84337 1.21207 0.92393 0.88983 1.00141 1.58788 1.12280 1.19336 1.47869 0.93181 0.97579 0.97612 0.93799 0.93753 0.75389 0.84560 0.89849 0.92964 0.96015 0.84039 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.65 21.45 0.29 -56.09 16 2 C -0.03 -1.77 5.46 84.65 0.46 -1.31 16 3 Si 1.12 49.84 29.90 68.60 2.05 51.89 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.63 -35.65 9.11 25.60 0.23 -35.42 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.01 0.32 4.40 29.85 0.13 0.46 16 10 C 0.15 6.52 5.61 86.38 0.48 7.00 16 11 N -0.72 -24.87 5.56 -463.06 -2.57 -27.44 16 12 C 0.53 17.49 7.59 87.66 0.67 18.16 16 13 O -0.58 -23.42 13.10 -3.04 -0.04 -23.46 16 14 C -0.19 -4.37 6.19 -11.54 -0.07 -4.44 16 15 H 0.15 2.52 8.14 -2.38 -0.02 2.50 16 16 C -0.13 -2.57 9.88 30.59 0.30 -2.27 16 17 C -0.11 -2.33 5.95 -10.79 -0.06 -2.40 16 18 H 0.14 2.12 8.13 -2.38 -0.02 2.10 16 19 C 0.10 2.64 5.33 86.30 0.46 3.10 16 20 N -0.85 -16.70 9.62 -186.71 -1.80 -18.50 16 21 H 0.26 15.59 7.22 -92.71 -0.67 14.92 16 22 H 0.01 0.31 8.01 -2.39 -0.02 0.29 16 23 H 0.01 0.29 8.01 -2.39 -0.02 0.27 16 24 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.04 2.04 8.14 -2.39 -0.02 2.03 16 26 H 0.41 12.01 8.47 -92.71 -0.79 11.23 16 27 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.08 1.92 8.03 -2.39 -0.02 1.90 16 29 H 0.05 1.61 7.30 -2.39 -0.02 1.59 16 30 H 0.02 0.66 6.92 -2.39 -0.02 0.65 16 31 H 0.35 6.13 9.08 -89.70 -0.81 5.31 16 32 H 0.35 5.30 8.98 -89.69 -0.81 4.50 16 Total: -1.00 -69.06 273.14 -0.63 -69.69 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -1.17 Total: 21.03 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 2.60 Total: -17.12 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -4.08 Total: -102.03 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.04 Total: -23.46 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.05 Total: 51.89 kcal Total: -69.06 -0.63 -69.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715101354.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.421 kcal (2) G-P(sol) polarization free energy of solvation -69.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds