Wall clock time and date at job start Mon Mar 30 2020 02:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99900 * 2 1 4 4 H 1.48498 * 109.46940 * 239.99490 * 3 2 1 5 5 H 1.48496 * 109.47341 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47121 * 120.00019 * 3 2 1 7 7 C 1.37875 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00260 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46949 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46708 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99893 * 180.02562 * 11 10 9 13 13 O 1.21283 * 119.99649 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.99774 * 179.72962 * 12 11 10 15 15 H 1.08996 * 115.55571 * 34.32938 * 14 12 11 16 16 C 1.53006 * 117.49428 * 248.61931 * 14 12 11 17 17 C 1.53001 * 117.49691 * 179.97438 * 14 12 11 18 18 H 1.08997 * 117.50357 * 214.97846 * 17 14 12 19 19 C 1.53002 * 117.49630 * 0.02562 * 17 14 12 20 20 N 1.46901 * 109.47055 * 185.00041 * 19 17 14 21 21 H 0.97000 * 120.00246 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46827 * 59.99505 * 9 7 2 23 23 H 1.08994 * 109.47143 * 299.99781 * 9 7 2 24 24 H 1.08998 * 109.46692 * 60.00339 * 10 9 7 25 25 H 1.08994 * 109.47584 * 300.00203 * 10 9 7 26 26 H 0.97005 * 120.00261 * 0.02562 * 11 10 9 27 27 H 1.08996 * 117.49757 * 0.02562 * 16 14 12 28 28 H 1.08998 * 117.49562 * 145.02542 * 16 14 12 29 29 H 1.08999 * 109.47215 * 304.99476 * 19 17 14 30 30 H 1.08993 * 109.47588 * 64.99828 * 19 17 14 31 31 H 1.00904 * 111.00258 * 56.04080 * 20 19 17 32 32 H 1.00900 * 111.00451 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0981 0.0018 13 8 3.3994 -6.0980 0.0023 14 6 1.4330 -7.4031 0.0086 15 1 0.4925 -7.4058 -0.5422 16 6 1.5134 -8.2586 1.2746 17 6 2.2551 -8.6935 0.0084 18 1 1.8550 -9.5451 -0.5418 19 6 3.7793 -8.5601 0.0019 20 7 4.3869 -9.8922 -0.1181 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5570 -0.8897 23 1 0.6240 -2.5568 0.8903 24 1 2.8718 -3.6043 0.8906 25 1 2.8719 -3.6044 -0.8894 26 1 0.5427 -4.9308 0.0011 27 1 2.1109 -7.8773 2.1025 28 1 0.6255 -8.8242 1.5569 29 1 4.0864 -7.9433 -0.8427 30 1 4.1072 -8.0935 0.9307 31 1 4.0483 -10.3715 -0.9390 32 1 5.3940 -9.8310 -0.1251 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715133768.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:41 Heat of formation + Delta-G solvation = -51.736869 kcal Electronic energy + Delta-G solvation = -13641.602372 eV Core-core repulsion = 11215.212873 eV Total energy + Delta-G solvation = -2426.389499 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.11425 -38.08390 -36.43280 -34.85244 -34.35495 -31.60947 -27.39359 -26.15887 -24.78233 -22.78424 -21.94848 -20.92461 -18.62937 -17.94345 -17.06409 -16.51956 -16.50278 -16.19704 -15.85346 -15.34597 -14.70677 -14.53162 -14.27269 -13.72902 -13.38417 -13.23721 -12.94172 -12.55809 -12.29545 -12.24605 -11.69266 -11.49126 -11.34790 -11.17605 -10.72011 -10.61490 -10.01476 -9.50543 -8.25493 -6.36454 1.40856 1.43103 1.51233 1.53255 2.23124 2.43991 2.84811 3.09130 3.45943 3.78716 3.92491 4.11423 4.19600 4.44689 4.46314 4.49467 4.69548 4.82484 4.86704 4.88625 5.04576 5.28073 5.37007 5.49238 5.55865 5.77080 6.14373 6.21225 6.61719 6.65046 6.76565 7.30159 7.33044 8.86187 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.070864 B = 0.005048 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.028370 B = 5545.187043 C = 5840.159746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.142 3.858 11 N -0.715 5.715 12 C 0.527 3.473 13 O -0.583 6.583 14 C -0.194 4.194 15 H 0.152 0.848 16 C -0.133 4.133 17 C -0.114 4.114 18 H 0.138 0.862 19 C 0.104 3.896 20 N -0.852 5.852 21 H 0.266 0.734 22 H 0.008 0.992 23 H 0.008 0.992 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.410 0.590 27 H 0.083 0.917 28 H 0.135 0.865 29 H 0.022 0.978 30 H 0.052 0.948 31 H 0.347 0.653 32 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.255 -16.620 -0.534 16.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.588 4.588 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.018 3.982 11 N -0.366 5.366 12 C 0.316 3.684 13 O -0.464 6.464 14 C -0.215 4.215 15 H 0.170 0.830 16 C -0.171 4.171 17 C -0.133 4.133 18 H 0.156 0.844 19 C -0.027 4.027 20 N -0.383 5.383 21 H 0.075 0.925 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.246 0.754 27 H 0.102 0.898 28 H 0.153 0.847 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.160 0.840 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.601 -16.620 0.165 16.698 hybrid contribution 0.273 1.668 -0.919 1.924 sum 1.875 -14.952 -0.754 15.088 Atomic orbital electron populations 1.70049 1.07552 1.28124 1.50849 1.25869 0.95796 1.03094 0.94311 0.85497 0.78321 0.78108 0.79125 1.19348 1.20467 1.19350 1.21443 0.93549 0.92002 1.51820 0.92397 1.19131 0.94223 0.91783 0.96336 1.21190 0.95021 0.82437 0.99570 1.46140 1.11112 1.05488 1.73814 1.20445 0.87421 0.85577 0.74982 1.90642 1.15621 1.88100 1.52087 1.22390 1.03092 0.88652 1.07407 0.82993 1.23149 1.03617 1.00144 0.90164 1.22382 0.93334 0.95646 1.01904 0.84422 1.21205 0.92393 0.88932 1.00163 1.58791 1.12167 1.19272 1.48074 0.92479 0.97317 0.97333 0.93792 0.93728 0.75386 0.89842 0.84650 0.95986 0.92936 0.84001 0.84066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.46 13.29 21.45 0.28 -54.17 16 2 C 0.01 0.46 5.46 84.65 0.46 0.92 16 3 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.55 -30.97 9.11 25.60 0.23 -30.74 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.16 5.09 29.85 0.15 1.31 16 10 C 0.14 6.18 5.61 86.38 0.48 6.67 16 11 N -0.72 -25.02 5.56 -463.06 -2.57 -27.60 16 12 C 0.53 17.57 7.59 87.65 0.67 18.24 16 13 O -0.58 -23.50 13.10 -3.04 -0.04 -23.54 16 14 C -0.19 -4.42 6.19 -11.54 -0.07 -4.49 16 15 H 0.15 2.57 8.14 -2.39 -0.02 2.55 16 16 C -0.13 -2.63 9.88 30.61 0.30 -2.32 16 17 C -0.11 -2.38 5.95 -10.77 -0.06 -2.44 16 18 H 0.14 2.15 8.13 -2.39 -0.02 2.13 16 19 C 0.10 2.66 5.32 86.30 0.46 3.12 16 20 N -0.85 -16.85 9.62 -186.72 -1.80 -18.65 16 21 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 22 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 23 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.41 12.28 8.47 -92.70 -0.79 11.49 16 27 H 0.08 1.95 8.03 -2.39 -0.02 1.93 16 28 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.02 0.67 6.93 -2.39 -0.02 0.66 16 30 H 0.05 1.62 7.29 -2.39 -0.02 1.60 16 31 H 0.35 5.37 8.98 -89.69 -0.81 4.56 16 32 H 0.35 6.17 9.08 -89.69 -0.81 5.36 16 Total: -1.00 -66.89 274.46 -0.74 -67.63 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -1.27 Total: 20.35 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 2.62 Total: -9.73 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -4.08 Total: -100.42 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.04 Total: -23.54 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -66.89 -0.74 -67.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715133768.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.890 kcal (2) G-P(sol) polarization free energy of solvation -66.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds