Wall clock time and date at job start Mon Mar 30 2020 02:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99650 * 2 1 4 4 H 1.48497 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47300 * 120.00042 * 3 2 1 6 6 H 1.48508 * 109.46691 * 239.99568 * 3 2 1 7 7 C 1.37880 * 120.00482 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00031 * 172.57236 * 7 2 1 9 9 C 1.50695 * 119.99579 * 352.57874 * 7 2 1 10 10 H 1.08999 * 109.47825 * 329.07019 * 9 7 2 11 11 C 1.53007 * 109.47299 * 89.07292 * 9 7 2 12 12 C 1.52995 * 109.47252 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.46968 * 299.99571 * 12 11 9 14 14 C 1.53001 * 109.46911 * 60.00638 * 13 12 11 15 15 H 1.08999 * 109.47313 * 59.99640 * 14 13 12 16 16 C 1.50702 * 109.47037 * 180.02562 * 14 13 12 17 17 N 1.29315 * 120.00540 * 94.99334 * 16 14 13 18 18 N 1.37009 * 119.99562 * 274.99359 * 16 14 13 19 19 O 1.41595 * 119.99933 * 179.97438 * 18 16 14 20 20 C 1.52997 * 109.47197 * 209.06919 * 9 7 2 21 21 H 0.96998 * 119.99554 * 174.50862 * 1 2 3 22 22 H 1.09006 * 109.46829 * 299.99966 * 11 9 7 23 23 H 1.08999 * 109.46972 * 59.99716 * 11 9 7 24 24 H 1.08999 * 109.47177 * 180.02562 * 12 11 9 25 25 H 1.08999 * 109.47331 * 59.99976 * 12 11 9 26 26 H 1.08999 * 109.47426 * 300.00347 * 13 12 11 27 27 H 1.09004 * 109.46834 * 180.02562 * 13 12 11 28 28 H 0.96999 * 120.00175 * 179.97438 * 17 16 14 29 29 H 0.97004 * 119.99775 * 0.02562 * 18 16 14 30 30 H 0.96701 * 113.99772 * 179.97438 * 19 18 16 31 31 H 1.08999 * 109.47233 * 300.00381 * 20 9 7 32 32 H 1.09002 * 109.47254 * 60.00059 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6966 1.2124 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0778 -1.1979 -0.1204 9 6 1.2606 -2.4935 0.1697 10 1 0.3801 -2.3300 0.7909 11 6 0.8273 -3.0155 -1.2018 12 6 0.0725 -4.3352 -1.0301 13 6 0.9870 -5.3621 -0.3593 14 6 1.4202 -4.8403 1.0122 15 1 0.5397 -4.6771 1.6336 16 6 2.3215 -5.8516 1.6727 17 7 3.6055 -5.7396 1.5676 18 7 1.7803 -6.8896 2.3846 19 8 2.6270 -7.8401 3.0048 20 6 2.1745 -3.5208 0.8408 21 1 -0.4849 -0.8362 -0.0804 22 1 0.1762 -2.2836 -1.6799 23 1 1.7079 -3.1791 -1.8230 24 1 -0.2357 -4.7072 -2.0071 25 1 -0.8080 -4.1720 -0.4087 26 1 1.8676 -5.5253 -0.9807 27 1 0.4494 -6.3025 -0.2374 28 1 4.1855 -6.3903 1.9930 29 1 0.8172 -6.9737 2.4632 30 1 2.1543 -8.5343 3.4841 31 1 3.0551 -3.6844 0.2195 32 1 2.4832 -3.1491 1.8178 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719368628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:09 Heat of formation + Delta-G solvation = -29.337505 kcal Electronic energy + Delta-G solvation = -14394.348896 eV Core-core repulsion = 11968.930707 eV Total energy + Delta-G solvation = -2425.418190 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.20348 -38.34898 -36.00936 -34.67063 -31.57369 -31.19946 -30.75790 -26.37895 -24.30477 -22.97974 -21.15146 -20.39710 -19.77089 -18.80781 -18.09265 -16.01759 -15.60712 -15.54687 -15.35358 -15.06280 -14.70072 -14.40313 -13.70245 -13.38316 -13.12992 -13.10608 -12.58192 -12.16501 -11.94785 -11.83347 -11.81688 -11.58594 -11.12465 -10.94823 -10.59739 -10.43791 -10.17102 -9.21012 -8.52702 -6.21569 1.22959 1.55123 1.62073 1.68215 1.81813 2.61798 3.24926 3.46590 3.90632 4.00236 4.30327 4.43562 4.49603 4.60528 4.68509 4.76791 4.91736 4.97111 5.09510 5.22752 5.28114 5.42404 5.46309 5.50900 5.75276 5.89945 6.03067 6.25069 6.34938 6.77700 6.99574 7.55157 7.62403 8.87163 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.043964 B = 0.007735 C = 0.007006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.726871 B = 3619.200779 C = 3995.566526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.028 4.028 3 Si 1.105 2.895 4 H -0.282 1.282 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.606 4.606 8 H 0.034 0.966 9 C 0.026 3.974 10 H 0.011 0.989 11 C -0.104 4.104 12 C -0.111 4.111 13 C -0.092 4.092 14 C -0.024 4.024 15 H 0.100 0.900 16 C 0.436 3.564 17 N -0.783 5.783 18 N -0.624 5.624 19 O -0.352 6.352 20 C -0.062 4.062 21 H 0.262 0.738 22 H 0.025 0.975 23 H 0.036 0.964 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.333 0.667 29 H 0.420 0.580 30 H 0.414 0.586 31 H 0.046 0.954 32 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.531 -14.954 3.439 15.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.227 4.227 3 Si 0.928 3.072 4 H -0.208 1.208 5 H -0.202 1.202 6 H -0.200 1.200 7 C -0.644 4.644 8 H 0.052 0.948 9 C 0.008 3.992 10 H 0.029 0.971 11 C -0.142 4.142 12 C -0.148 4.148 13 C -0.130 4.130 14 C -0.045 4.045 15 H 0.118 0.882 16 C 0.155 3.845 17 N -0.417 5.417 18 N -0.312 5.312 19 O -0.252 6.252 20 C -0.100 4.100 21 H 0.072 0.928 22 H 0.044 0.956 23 H 0.055 0.945 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.149 0.851 29 H 0.262 0.738 30 H 0.263 0.737 31 H 0.065 0.935 32 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.545 -12.335 2.824 12.666 hybrid contribution -0.421 -2.857 0.967 3.045 sum -0.966 -15.192 3.791 15.687 Atomic orbital electron populations 1.70886 1.07584 1.30451 1.48697 1.27033 0.96680 1.05813 0.93135 0.83090 0.74297 0.72266 0.77565 1.20762 1.20211 1.20020 1.22363 0.94547 0.94039 1.53493 0.94785 1.18896 0.94397 0.92992 0.92947 0.97108 1.21591 0.98055 0.95777 0.98779 1.21544 0.97964 0.94410 1.00922 1.21444 0.99505 0.98633 0.93458 1.20215 0.95990 0.91304 0.96983 0.88232 1.22700 0.91293 0.84339 0.86160 1.69482 1.03361 1.35531 1.33326 1.46240 1.05328 1.23373 1.56254 1.88905 1.24643 1.39119 1.72562 1.21122 0.97778 0.92169 0.98973 0.92762 0.95641 0.94527 0.90688 0.91715 0.92730 0.89015 0.85096 0.73827 0.73678 0.93528 0.95268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.17 13.55 21.45 0.29 -56.88 16 2 C -0.03 -1.65 5.45 84.66 0.46 -1.19 16 3 Si 1.10 51.80 29.91 68.60 2.05 53.85 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.61 -35.07 8.30 25.60 0.21 -34.86 16 8 H 0.03 2.01 7.82 -2.91 -0.02 1.99 16 9 C 0.03 1.32 1.74 -11.54 -0.02 1.30 16 10 H 0.01 0.57 6.98 -2.39 -0.02 0.55 16 11 C -0.10 -4.58 5.10 30.59 0.16 -4.43 16 12 C -0.11 -3.56 5.92 30.59 0.18 -3.38 16 13 C -0.09 -2.63 5.19 30.60 0.16 -2.47 16 14 C -0.02 -0.78 2.54 -11.56 -0.03 -0.81 16 15 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 16 C 0.44 13.53 7.09 137.83 0.98 14.51 16 17 N -0.78 -28.87 12.86 -49.84 -0.64 -29.51 16 18 N -0.62 -13.58 7.05 -50.05 -0.35 -13.93 16 19 O -0.35 -6.76 14.04 -38.77 -0.54 -7.30 16 20 C -0.06 -2.71 3.95 30.58 0.12 -2.59 16 21 H 0.26 15.82 6.40 -92.71 -0.59 15.23 16 22 H 0.02 1.22 7.69 -2.38 -0.02 1.21 16 23 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.33 11.67 7.87 -92.71 -0.73 10.94 16 29 H 0.42 6.01 8.86 -92.71 -0.82 5.19 16 30 H 0.41 2.58 9.28 -74.06 -0.69 1.89 16 31 H 0.05 2.20 7.79 -2.39 -0.02 2.18 16 32 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -72.61 263.68 2.10 -70.51 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -0.92 Total: 17.19 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 2.22 Total: -33.92 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -0.70 Total: -100.32 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.54 Total: -7.30 kcal Atomic # 14 Polarization: 51.80 SS G_CDS: 2.05 Total: 53.85 kcal Total: -72.61 2.10 -70.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719368628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.169 kcal (2) G-P(sol) polarization free energy of solvation -72.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds