Wall clock time and date at job start Mon Mar 30 2020 02:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00539 * 2 1 4 4 H 1.48495 * 109.46645 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.46982 * 119.99707 * 3 2 1 6 6 H 1.48496 * 109.47150 * 239.99848 * 3 2 1 7 7 C 1.37885 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99377 * 17.75625 * 7 2 1 9 9 C 1.50695 * 120.00160 * 197.75038 * 7 2 1 10 10 H 1.08996 * 109.47129 * 305.62233 * 9 7 2 11 11 C 1.53003 * 109.47187 * 65.62439 * 9 7 2 12 12 C 1.53003 * 109.47023 * 59.99788 * 11 9 7 13 13 C 1.52995 * 109.47038 * 60.00002 * 12 11 9 14 14 C 1.53000 * 109.47390 * 300.00216 * 13 12 11 15 15 H 1.09004 * 109.47002 * 299.99663 * 14 13 12 16 16 C 1.50700 * 109.47200 * 179.97438 * 14 13 12 17 17 N 1.29319 * 120.00209 * 264.99448 * 16 14 13 18 18 N 1.37008 * 119.99960 * 85.00062 * 16 14 13 19 19 O 1.41599 * 119.99982 * 179.97438 * 18 16 14 20 20 C 1.52995 * 109.46960 * 185.62490 * 9 7 2 21 21 H 0.96993 * 120.00181 * 174.68303 * 1 2 3 22 22 H 1.08994 * 109.47163 * 179.97438 * 11 9 7 23 23 H 1.09000 * 109.46619 * 300.00121 * 11 9 7 24 24 H 1.09004 * 109.47322 * 300.00358 * 12 11 9 25 25 H 1.08993 * 109.46988 * 180.02562 * 12 11 9 26 26 H 1.09001 * 109.47413 * 179.97438 * 13 12 11 27 27 H 1.09004 * 109.47298 * 60.00045 * 13 12 11 28 28 H 0.97003 * 120.00526 * 179.97438 * 17 16 14 29 29 H 0.96996 * 120.00105 * 359.97438 * 18 16 14 30 30 H 0.96693 * 114.00033 * 179.97438 * 19 18 16 31 31 H 1.08998 * 109.47675 * 59.99752 * 20 9 7 32 32 H 1.09004 * 109.47298 * 180.02562 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6963 1.2126 6 1 3.1031 1.6963 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 1.5030 -2.1073 -0.2843 9 6 3.4577 -1.2251 0.3984 10 1 4.0162 -0.5141 -0.2103 11 6 3.5903 -0.8470 1.8750 12 6 2.8062 -1.8450 2.7295 13 6 3.3648 -3.2525 2.5112 14 6 3.2322 -3.6306 1.0346 15 1 2.1811 -3.6083 0.7468 16 6 3.7830 -5.0168 0.8196 17 7 5.0065 -5.1734 0.4311 18 7 2.9875 -6.1111 1.0357 19 8 3.5049 -7.4136 0.8331 20 6 4.0163 -2.6326 0.1802 21 1 -0.4850 -0.8364 -0.0778 22 1 4.6413 -0.8698 2.1629 23 1 3.1923 0.1558 2.0304 24 1 1.7551 -1.8226 2.4416 25 1 2.9003 -1.5754 3.7813 26 1 2.8065 -3.9635 3.1203 27 1 4.4159 -3.2750 2.7991 28 1 5.3612 -6.0656 0.2930 29 1 2.0699 -5.9938 1.3274 30 1 2.8701 -8.1210 1.0110 31 1 3.9218 -2.9021 -0.8717 32 1 5.0673 -2.6552 0.4684 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719368631.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:12 Heat of formation + Delta-G solvation = 2.718267 kcal Electronic energy + Delta-G solvation = -14669.718980 eV Core-core repulsion = 12245.690833 eV Total energy + Delta-G solvation = -2424.028147 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.76692 -37.09534 -34.56828 -32.38732 -30.19641 -29.62404 -29.57197 -24.30538 -22.88440 -21.17861 -19.45314 -18.88647 -18.56757 -16.97195 -16.53942 -14.89468 -14.12506 -13.92435 -13.60031 -13.37353 -13.35884 -12.79288 -12.31779 -11.78950 -11.48407 -11.05489 -10.77881 -10.59309 -10.44479 -10.06418 -10.00250 -9.67669 -9.25507 -9.20871 -9.06029 -8.64210 -8.03621 -8.01398 -6.35698 -3.95896 2.27259 3.04323 3.44719 3.50219 3.67222 4.56250 4.92504 5.25826 5.34364 5.50658 5.59897 5.90617 6.09731 6.30846 6.35290 6.43262 6.53790 6.59550 6.60612 6.82142 6.92956 7.04771 7.13408 7.25550 7.31194 7.41037 7.60259 7.94068 8.29282 8.44441 8.88841 8.98633 9.70170 11.02828 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.046331 B = 0.008863 C = 0.008575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.208068 B = 3158.535524 C = 3264.424934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.029 3.971 3 Si 1.044 2.956 4 H -0.290 1.290 5 H -0.274 1.274 6 H -0.285 1.285 7 C -0.587 4.587 8 H 0.055 0.945 9 C 0.011 3.989 10 H 0.022 0.978 11 C -0.121 4.121 12 C -0.103 4.103 13 C -0.097 4.097 14 C -0.019 4.019 15 H 0.096 0.904 16 C 0.433 3.567 17 N -0.752 5.752 18 N -0.635 5.635 19 O -0.346 6.346 20 C -0.069 4.069 21 H 0.264 0.736 22 H 0.031 0.969 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.330 0.670 29 H 0.402 0.598 30 H 0.387 0.613 31 H 0.050 0.950 32 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.966 -8.953 4.692 10.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.175 4.175 3 Si 0.874 3.126 4 H -0.216 1.216 5 H -0.200 1.200 6 H -0.212 1.212 7 C -0.625 4.625 8 H 0.074 0.926 9 C -0.008 4.008 10 H 0.040 0.960 11 C -0.159 4.159 12 C -0.140 4.140 13 C -0.136 4.136 14 C -0.040 4.040 15 H 0.114 0.886 16 C 0.153 3.847 17 N -0.384 5.384 18 N -0.324 5.324 19 O -0.240 6.240 20 C -0.107 4.107 21 H 0.074 0.926 22 H 0.049 0.951 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.146 0.854 29 H 0.241 0.759 30 H 0.231 0.769 31 H 0.069 0.931 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.179 -6.391 4.336 9.299 hybrid contribution -1.093 -3.432 0.187 3.607 sum 4.086 -9.823 4.523 11.561 Atomic orbital electron populations 1.70879 1.07009 1.30628 1.46234 1.25696 0.96107 1.02374 0.93314 0.84046 0.75333 0.75973 0.77247 1.21632 1.20011 1.21196 1.21959 0.94914 0.95739 1.49891 0.92641 1.19090 0.97435 0.92340 0.91927 0.95951 1.21948 0.96721 0.98870 0.98322 1.21342 1.01941 0.93290 0.97427 1.21449 1.00738 0.97782 0.93595 1.20222 1.01230 0.85011 0.97509 0.88621 1.23343 0.86934 0.86307 0.88121 1.69452 1.11133 1.30800 1.26993 1.46734 1.14567 0.93524 1.77539 1.88898 1.35694 1.06235 1.93150 1.21194 0.97539 0.94428 0.97571 0.92561 0.95064 0.92342 0.90357 0.94082 0.93475 0.92405 0.85410 0.75883 0.76864 0.93124 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.04 13.70 55.43 0.76 -26.28 16 2 C 0.03 0.81 5.33 -17.82 -0.09 0.71 16 3 Si 1.04 24.90 26.37 -169.99 -4.48 20.41 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.27 -6.03 5.61 56.52 0.32 -5.71 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.59 -15.41 6.98 -34.44 -0.24 -15.65 16 8 H 0.06 1.54 6.75 -52.48 -0.35 1.19 16 9 C 0.01 0.26 2.17 -91.77 -0.20 0.06 16 10 H 0.02 0.53 6.79 -51.93 -0.35 0.18 16 11 C -0.12 -2.55 5.15 -26.73 -0.14 -2.69 16 12 C -0.10 -1.96 5.70 -26.73 -0.15 -2.12 16 13 C -0.10 -1.67 5.19 -26.73 -0.14 -1.81 16 14 C -0.02 -0.35 2.31 -91.77 -0.21 -0.56 16 15 H 0.10 1.87 6.51 -51.93 -0.34 1.53 16 16 C 0.43 7.54 7.09 -154.56 -1.10 6.44 16 17 N -0.75 -14.17 12.86 32.89 0.42 -13.75 16 18 N -0.64 -8.82 7.05 32.83 0.23 -8.59 16 19 O -0.35 -4.18 14.04 -11.47 -0.16 -4.34 16 20 C -0.07 -1.44 4.19 -26.73 -0.11 -1.55 16 21 H 0.26 7.77 8.73 -40.82 -0.36 7.42 16 22 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 1.30 4.82 -51.93 -0.25 1.05 16 24 H 0.08 1.69 7.22 -51.93 -0.37 1.31 16 25 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.33 5.95 7.87 -40.82 -0.32 5.63 16 29 H 0.40 4.52 8.86 -40.82 -0.36 4.15 16 30 H 0.39 2.33 9.28 45.56 0.42 2.75 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 1.13 7.79 -51.93 -0.40 0.73 16 LS Contribution 253.27 15.07 3.82 3.82 Total: -1.00 -31.03 253.27 -5.48 -36.51 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -3.69 Total: 9.39 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -2.38 Total: -17.17 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 1.41 Total: -48.63 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.16 Total: -4.34 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -4.48 Total: 20.41 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.03 -5.48 -36.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719368631.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.227 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds