Wall clock time and date at job start Mon Mar 30 2020 02:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00539 * 2 1 4 4 H 1.48495 * 109.46645 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.46982 * 119.99707 * 3 2 1 6 6 H 1.48496 * 109.47150 * 239.99848 * 3 2 1 7 7 C 1.37885 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99377 * 17.75625 * 7 2 1 9 9 C 1.50695 * 120.00160 * 197.75038 * 7 2 1 10 10 H 1.08996 * 109.47129 * 305.62233 * 9 7 2 11 11 C 1.53003 * 109.47187 * 65.62439 * 9 7 2 12 12 C 1.53003 * 109.47023 * 59.99788 * 11 9 7 13 13 C 1.52995 * 109.47038 * 60.00002 * 12 11 9 14 14 C 1.53000 * 109.47390 * 300.00216 * 13 12 11 15 15 H 1.09004 * 109.47002 * 299.99663 * 14 13 12 16 16 C 1.50700 * 109.47200 * 179.97438 * 14 13 12 17 17 N 1.29319 * 120.00209 * 264.99448 * 16 14 13 18 18 N 1.37008 * 119.99960 * 85.00062 * 16 14 13 19 19 O 1.41599 * 119.99982 * 179.97438 * 18 16 14 20 20 C 1.52995 * 109.46960 * 185.62490 * 9 7 2 21 21 H 0.96993 * 120.00181 * 174.68303 * 1 2 3 22 22 H 1.08994 * 109.47163 * 179.97438 * 11 9 7 23 23 H 1.09000 * 109.46619 * 300.00121 * 11 9 7 24 24 H 1.09004 * 109.47322 * 300.00358 * 12 11 9 25 25 H 1.08993 * 109.46988 * 180.02562 * 12 11 9 26 26 H 1.09001 * 109.47413 * 179.97438 * 13 12 11 27 27 H 1.09004 * 109.47298 * 60.00045 * 13 12 11 28 28 H 0.97003 * 120.00526 * 179.97438 * 17 16 14 29 29 H 0.96996 * 120.00105 * 359.97438 * 18 16 14 30 30 H 0.96693 * 114.00033 * 179.97438 * 19 18 16 31 31 H 1.08998 * 109.47675 * 59.99752 * 20 9 7 32 32 H 1.09004 * 109.47298 * 180.02562 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1030 1.6963 1.2126 6 1 3.1031 1.6963 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 1.5030 -2.1073 -0.2843 9 6 3.4577 -1.2251 0.3984 10 1 4.0162 -0.5141 -0.2103 11 6 3.5903 -0.8470 1.8750 12 6 2.8062 -1.8450 2.7295 13 6 3.3648 -3.2525 2.5112 14 6 3.2322 -3.6306 1.0346 15 1 2.1811 -3.6083 0.7468 16 6 3.7830 -5.0168 0.8196 17 7 5.0065 -5.1734 0.4311 18 7 2.9875 -6.1111 1.0357 19 8 3.5049 -7.4136 0.8331 20 6 4.0163 -2.6326 0.1802 21 1 -0.4850 -0.8364 -0.0778 22 1 4.6413 -0.8698 2.1629 23 1 3.1923 0.1558 2.0304 24 1 1.7551 -1.8226 2.4416 25 1 2.9003 -1.5754 3.7813 26 1 2.8065 -3.9635 3.1203 27 1 4.4159 -3.2750 2.7991 28 1 5.3612 -6.0656 0.2930 29 1 2.0699 -5.9938 1.3274 30 1 2.8701 -8.1210 1.0110 31 1 3.9218 -2.9021 -0.8717 32 1 5.0673 -2.6552 0.4684 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719368631.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:12 Heat of formation + Delta-G solvation = -20.353488 kcal Electronic energy + Delta-G solvation = -14670.719446 eV Core-core repulsion = 12245.690833 eV Total energy + Delta-G solvation = -2425.028614 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.24831 -38.37719 -35.90133 -34.35227 -31.82163 -31.17335 -30.90726 -26.29103 -24.39052 -22.79354 -20.92153 -20.52797 -19.84179 -18.62456 -18.10758 -16.49329 -15.53701 -15.51809 -15.09326 -14.92881 -14.72140 -14.46068 -13.96055 -13.30655 -13.17031 -12.71401 -12.41144 -12.25041 -12.09059 -11.78127 -11.66471 -11.43831 -11.07931 -10.71332 -10.62014 -10.45968 -10.10855 -9.21152 -8.54803 -6.14243 1.23311 1.53912 1.60180 1.68624 1.78553 2.58987 3.23608 3.52319 4.00557 4.08456 4.32653 4.49057 4.57335 4.74382 4.81628 4.85441 4.90704 5.04283 5.11766 5.29673 5.32486 5.52315 5.57354 5.65392 5.70756 5.86391 6.01303 6.21352 6.31477 6.79266 6.95072 7.58486 7.60869 8.83357 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.046331 B = 0.008863 C = 0.008575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.208068 B = 3158.535524 C = 3264.424934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.020 4.020 3 Si 1.075 2.925 4 H -0.298 1.298 5 H -0.242 1.242 6 H -0.275 1.275 7 C -0.572 4.572 8 H 0.028 0.972 9 C 0.006 3.994 10 H 0.018 0.982 11 C -0.122 4.122 12 C -0.100 4.100 13 C -0.089 4.089 14 C -0.014 4.014 15 H 0.079 0.921 16 C 0.434 3.566 17 N -0.777 5.777 18 N -0.628 5.628 19 O -0.350 6.350 20 C -0.063 4.063 21 H 0.251 0.749 22 H 0.055 0.945 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.332 0.668 29 H 0.416 0.584 30 H 0.413 0.587 31 H 0.030 0.970 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.338 -9.610 5.995 12.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.217 4.217 3 Si 0.899 3.101 4 H -0.225 1.225 5 H -0.166 1.166 6 H -0.200 1.200 7 C -0.610 4.610 8 H 0.046 0.954 9 C -0.013 4.013 10 H 0.036 0.964 11 C -0.160 4.160 12 C -0.137 4.137 13 C -0.128 4.128 14 C -0.035 4.035 15 H 0.097 0.903 16 C 0.154 3.846 17 N -0.411 5.411 18 N -0.315 5.315 19 O -0.250 6.250 20 C -0.101 4.101 21 H 0.060 0.940 22 H 0.074 0.926 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.148 0.852 29 H 0.257 0.743 30 H 0.262 0.738 31 H 0.049 0.951 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.523 -7.097 5.659 11.177 hybrid contribution -1.556 -3.373 -0.263 3.723 sum 4.967 -10.469 5.396 12.783 Atomic orbital electron populations 1.70996 1.08194 1.29835 1.49462 1.26848 0.96049 1.05699 0.93119 0.83672 0.74873 0.72485 0.79063 1.22492 1.16620 1.20048 1.22102 0.96569 0.94359 1.48005 0.95396 1.19129 0.94971 0.93750 0.93479 0.96407 1.21899 0.98514 0.98725 0.96820 1.21284 0.99744 0.94145 0.98553 1.21395 1.01469 0.97124 0.92767 1.20016 0.99743 0.85589 0.98146 0.90259 1.22897 0.87028 0.86750 0.87956 1.69449 1.12049 1.31224 1.28399 1.46351 1.14716 0.94121 1.76355 1.88873 1.37154 1.05757 1.93218 1.21057 0.98154 0.93918 0.97004 0.94001 0.92599 0.93529 0.93453 0.91430 0.90843 0.91604 0.85205 0.74297 0.73758 0.95075 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.59 13.70 21.45 0.29 -57.29 16 2 C -0.02 -1.10 5.33 84.66 0.45 -0.65 16 3 Si 1.07 49.60 26.37 68.60 1.81 51.41 16 4 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 5 H -0.24 -9.87 5.61 99.48 0.56 -9.32 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 7 C -0.57 -30.41 6.98 25.60 0.18 -30.23 16 8 H 0.03 1.61 6.75 -2.91 -0.02 1.59 16 9 C 0.01 0.26 2.17 -11.54 -0.03 0.24 16 10 H 0.02 0.82 6.79 -2.39 -0.02 0.81 16 11 C -0.12 -4.87 5.15 30.60 0.16 -4.71 16 12 C -0.10 -3.60 5.70 30.59 0.17 -3.42 16 13 C -0.09 -2.82 5.19 30.59 0.16 -2.66 16 14 C -0.01 -0.50 2.31 -11.54 -0.03 -0.53 16 15 H 0.08 3.09 6.51 -2.38 -0.02 3.08 16 16 C 0.43 14.35 7.09 137.83 0.98 15.32 16 17 N -0.78 -28.01 12.86 -49.84 -0.64 -28.65 16 18 N -0.63 -15.98 7.05 -50.05 -0.35 -16.34 16 19 O -0.35 -7.50 14.04 -38.78 -0.54 -8.05 16 20 C -0.06 -2.58 4.19 30.59 0.13 -2.45 16 21 H 0.25 15.36 8.73 -92.71 -0.81 14.56 16 22 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.05 1.96 4.82 -2.39 -0.01 1.95 16 24 H 0.05 2.00 7.22 -2.38 -0.02 1.98 16 25 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.33 11.43 7.87 -92.71 -0.73 10.70 16 29 H 0.42 8.36 8.86 -92.71 -0.82 7.54 16 30 H 0.41 3.65 9.28 -74.06 -0.69 2.96 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.34 16 32 H 0.06 2.46 7.79 -2.39 -0.02 2.44 16 Total: -1.00 -66.70 253.27 1.47 -65.24 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: -1.27 Total: 22.77 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 2.17 Total: -29.09 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -0.70 Total: -102.28 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.54 Total: -8.05 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 1.81 Total: 51.41 kcal Total: -66.70 1.47 -65.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719368631.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.883 kcal (2) G-P(sol) polarization free energy of solvation -66.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds