Wall clock time and date at job start Mon Mar 30 2020 02:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00140 * 2 1 4 4 H 1.09004 * 112.86588 * 18.72863 * 3 2 1 5 5 C 1.53884 * 113.64537 * 247.32858 * 3 2 1 6 6 C 1.53883 * 87.18151 * 220.49269 * 5 3 2 7 7 C 1.53192 * 113.63885 * 150.00287 * 3 2 1 8 8 C 1.53859 * 114.62106 * 255.69743 * 7 3 2 9 9 C 1.55694 * 102.07293 * 151.40507 * 8 7 3 10 10 C 1.55003 * 100.90053 * 326.35417 * 9 8 7 11 11 H 1.09002 * 110.30549 * 277.16167 * 10 9 8 12 12 C 1.50701 * 110.30122 * 155.10582 * 10 9 8 13 13 H 1.08000 * 120.00461 * 1.37588 * 12 10 9 14 14 C 1.37880 * 119.99719 * 181.37265 * 12 10 9 15 15 N 1.31511 * 119.99791 * 179.97438 * 14 12 10 16 16 Si 1.86801 * 120.00273 * 0.02562 * 14 12 10 17 17 H 1.48504 * 109.47080 * 89.99386 * 16 14 12 18 18 H 1.48490 * 109.47379 * 209.99551 * 16 14 12 19 19 H 1.48501 * 109.46968 * 329.99821 * 16 14 12 20 20 O 1.42622 * 115.39696 * 22.52041 * 7 3 2 21 21 H 1.09005 * 109.46545 * 299.99300 * 1 2 3 22 22 H 1.09000 * 109.47039 * 59.99323 * 1 2 3 23 23 H 1.09001 * 109.46962 * 179.97438 * 1 2 3 24 24 H 1.08999 * 113.59609 * 335.06815 * 5 3 2 25 25 H 1.09000 * 113.59808 * 105.83528 * 5 3 2 26 26 H 1.09001 * 113.64148 * 270.49321 * 6 5 3 27 27 H 1.09003 * 113.64130 * 139.50761 * 6 5 3 28 28 H 1.08989 * 110.91885 * 269.59560 * 8 7 3 29 29 H 1.09007 * 110.90692 * 33.22019 * 8 7 3 30 30 H 1.08996 * 111.20902 * 208.43979 * 9 8 7 31 31 H 1.08996 * 111.12354 * 84.23469 * 9 8 7 32 32 H 0.97006 * 120.00058 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3136 2.0793 0.3225 5 6 2.7577 1.6483 -1.3007 6 6 3.8327 2.3085 -0.4195 7 6 3.3705 1.3722 0.7016 8 6 3.3397 2.0138 2.0997 9 6 4.5297 1.3041 2.8099 10 6 4.4656 -0.1001 2.1568 11 1 3.7245 -0.7191 2.6626 12 6 5.8189 -0.7615 2.2051 13 1 6.6506 -0.2562 2.6734 14 6 5.9952 -2.0118 1.6513 15 7 7.1763 -2.5888 1.6930 16 14 4.5569 -2.8857 0.8406 17 1 4.5082 -2.5274 -0.5998 18 1 4.7276 -4.3541 0.9799 19 1 3.2915 -2.4699 1.4971 20 8 4.0730 0.1344 0.7930 21 1 -0.3632 0.5138 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1150 0.7725 -1.8424 25 1 2.2227 2.3514 -1.9391 26 1 3.6435 3.3622 -0.2149 27 1 4.8517 2.1175 -0.7562 28 1 3.5085 3.0888 2.0384 29 1 2.3992 1.7972 2.6065 30 1 4.3677 1.2443 3.8861 31 1 5.4739 1.7995 2.5839 32 1 7.3004 -3.4683 1.3031 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724217648.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:00 Heat of formation + Delta-G solvation = -64.243988 kcal Electronic energy + Delta-G solvation = -15052.805110 eV Core-core repulsion = 12593.580510 eV Total energy + Delta-G solvation = -2459.224600 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.87950 -36.99889 -34.90048 -32.29710 -31.15374 -28.03381 -26.80819 -24.28404 -24.15638 -21.50699 -20.35835 -18.84050 -16.78663 -16.49805 -15.84366 -15.23390 -14.68981 -14.42306 -13.76685 -13.11561 -12.83780 -12.60662 -12.46649 -12.31505 -11.82787 -11.50031 -10.96803 -10.87706 -10.71406 -10.62116 -10.28168 -10.09506 -9.67165 -9.52612 -9.38718 -9.03767 -8.52793 -8.12506 -6.04367 -4.13598 3.50194 3.60602 3.74789 4.11996 4.52132 4.64375 4.95887 4.98504 5.16140 5.28417 5.38124 5.43496 5.50870 5.53723 5.74716 5.77131 5.85314 5.91019 6.05005 6.14219 6.34134 6.44027 6.54656 6.57112 6.74575 6.75719 7.30899 7.57889 7.68780 8.41787 8.49259 8.95991 9.59677 11.05559 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.030293 B = 0.013424 C = 0.011169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.093185 B = 2085.266985 C = 2506.416271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.050 3.950 4 H 0.084 0.916 5 C -0.148 4.148 6 C -0.147 4.147 7 C 0.096 3.904 8 C -0.145 4.145 9 C -0.134 4.134 10 C 0.169 3.831 11 H 0.033 0.967 12 C -0.520 4.520 13 H 0.079 0.921 14 C 0.084 3.916 15 N -0.894 5.894 16 Si 0.900 3.100 17 H -0.274 1.274 18 H -0.301 1.301 19 H -0.260 1.260 20 O -0.347 6.347 21 H 0.036 0.964 22 H 0.035 0.965 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.038 9.274 -2.789 15.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.275 6.275 3 C -0.008 4.008 4 H 0.102 0.898 5 C -0.186 4.186 6 C -0.184 4.184 7 C 0.055 3.945 8 C -0.182 4.182 9 C -0.172 4.172 10 C 0.114 3.886 11 H 0.051 0.949 12 C -0.557 4.557 13 H 0.097 0.903 14 C -0.121 4.121 15 N -0.532 5.532 16 Si 0.729 3.271 17 H -0.199 1.199 18 H -0.229 1.229 19 H -0.185 1.185 20 O -0.266 6.266 21 H 0.055 0.945 22 H 0.053 0.947 23 H 0.099 0.901 24 H 0.109 0.891 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.781 8.809 -2.990 15.011 hybrid contribution -0.940 -0.115 -0.366 1.015 sum -12.721 8.693 -3.356 15.769 Atomic orbital electron populations 1.22767 0.82771 1.02297 0.99123 1.88170 1.18041 1.26876 1.94372 1.24400 0.94129 0.85110 0.97186 0.89815 1.23353 0.97734 1.00842 0.96675 1.23089 1.00336 0.97810 0.97192 1.22806 0.90334 0.88058 0.93344 1.23059 0.99690 0.99658 0.95827 1.23194 0.97049 0.97614 0.99311 1.21190 0.95897 0.92242 0.79240 0.94925 1.21049 0.94623 1.01369 1.38623 0.90340 1.25062 0.96029 0.97088 0.93903 1.69938 1.22821 1.15968 1.44459 0.86397 0.83252 0.76319 0.81152 1.19948 1.22877 1.18479 1.88542 1.72214 1.34160 1.31713 0.94545 0.94662 0.90127 0.89097 0.92065 0.89964 0.89814 0.91211 0.91552 0.91572 0.90980 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.85 101.05 1.10 1.47 16 2 O -0.36 -6.83 10.38 -49.22 -0.51 -7.34 16 3 C 0.05 0.85 3.87 -26.17 -0.10 0.75 16 4 H 0.08 1.15 7.85 -51.93 -0.41 0.74 16 5 C -0.15 -2.36 7.91 -25.81 -0.20 -2.57 16 6 C -0.15 -2.39 7.53 -26.17 -0.20 -2.59 16 7 C 0.10 1.86 1.45 -89.97 -0.13 1.73 16 8 C -0.14 -2.47 6.36 -24.85 -0.16 -2.63 16 9 C -0.13 -2.72 6.56 -24.24 -0.16 -2.88 16 10 C 0.17 4.28 2.67 -26.82 -0.07 4.21 16 11 H 0.03 0.86 7.18 -51.93 -0.37 0.49 16 12 C -0.52 -15.31 9.38 -34.44 -0.32 -15.63 16 13 H 0.08 2.43 8.00 -52.49 -0.42 2.01 16 14 C 0.08 2.54 5.47 -17.82 -0.10 2.44 16 15 N -0.89 -28.19 13.96 55.43 0.77 -27.42 16 16 Si 0.90 24.45 26.38 -169.99 -4.48 19.96 16 17 H -0.27 -7.59 7.11 56.52 0.40 -7.19 16 18 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 19 H -0.26 -7.01 6.53 56.52 0.37 -6.64 16 20 O -0.35 -8.68 8.46 -49.22 -0.42 -9.10 16 21 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 24 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.08 1.08 7.92 -51.93 -0.41 0.67 16 27 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.07 0.99 7.78 -51.94 -0.40 0.59 16 29 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.49 8.04 -51.93 -0.42 1.07 16 32 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 262.16 15.07 3.95 3.95 Total: -1.00 -33.27 262.16 -6.02 -39.28 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -4.98 Total: -3.64 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -0.35 Total: -15.70 kcal Atomic # 7 Polarization: -28.19 SS G_CDS: 0.77 Total: -27.42 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.93 Total: -16.44 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -4.48 Total: 19.96 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.27 -6.02 -39.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724217648.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.960 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds