Wall clock time and date at job start Mon Mar 30 2020 02:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 113.99835 * 2 1 4 4 H 1.09002 * 112.87236 * 20.33119 * 3 2 1 5 5 C 1.53896 * 113.64349 * 249.04031 * 3 2 1 6 6 C 1.54187 * 87.08722 * 220.49617 * 5 3 2 7 7 C 1.53141 * 86.89574 * 24.96491 * 6 5 3 8 8 C 1.53521 * 114.90736 * 91.39319 * 7 6 5 9 9 C 1.54976 * 103.88966 * 131.97421 * 8 7 6 10 10 C 1.55039 * 102.12288 * 20.84699 * 9 8 7 11 11 H 1.09002 * 110.59760 * 81.89222 * 10 9 8 12 12 C 1.50702 * 110.59200 * 204.67285 * 10 9 8 13 13 H 1.08000 * 120.00162 * 0.02562 * 12 10 9 14 14 C 1.37879 * 119.99980 * 179.97438 * 12 10 9 15 15 N 1.31517 * 120.00082 * 179.97438 * 14 12 10 16 16 Si 1.86795 * 120.00029 * 0.02562 * 14 12 10 17 17 H 1.48495 * 109.47526 * 89.99799 * 16 14 12 18 18 H 1.48504 * 109.47332 * 209.99736 * 16 14 12 19 19 H 1.48504 * 109.47026 * 329.99969 * 16 14 12 20 20 O 1.43063 * 115.23671 * 218.02469 * 7 6 5 21 21 H 1.09000 * 109.47069 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47325 * 299.99806 * 1 2 3 23 23 H 1.09005 * 109.46602 * 60.00405 * 1 2 3 24 24 H 1.09001 * 113.59855 * 335.02504 * 5 3 2 25 25 H 1.09000 * 113.59512 * 105.87009 * 5 3 2 26 26 H 1.08996 * 113.64162 * 270.46522 * 6 5 3 27 27 H 1.09001 * 113.64596 * 139.46416 * 6 5 3 28 28 H 1.09001 * 110.53842 * 250.57073 * 8 7 6 29 29 H 1.09000 * 110.54780 * 13.37057 * 8 7 6 30 30 H 1.08994 * 110.87136 * 139.00657 * 9 8 7 31 31 H 1.08995 * 110.86738 * 262.47963 * 9 8 7 32 32 H 0.97000 * 119.99705 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3222 2.0755 0.3489 5 6 2.7219 1.6642 -1.3165 6 6 3.8216 2.3144 -0.4532 7 6 3.3877 1.3645 0.6669 8 6 4.1423 0.0283 0.7100 9 6 4.5448 -0.1238 2.1988 10 6 3.5399 0.8216 2.9060 11 1 2.5816 0.3231 3.0515 12 6 4.0952 1.2946 4.2247 13 1 5.0714 0.9655 4.5488 14 6 3.3574 2.1485 5.0169 15 7 3.8418 2.5609 6.1680 16 14 1.6693 2.7184 4.4561 17 1 0.6379 1.7702 4.9482 18 1 1.3974 4.0725 5.0017 19 1 1.6305 2.7656 2.9723 20 8 3.4038 1.9255 1.9828 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 3.0648 0.7952 -1.8780 25 1 2.1700 2.3753 -1.9311 26 1 3.6382 3.3655 -0.2305 27 1 4.8316 2.1275 -0.8181 28 1 3.4895 -0.7896 0.4048 29 1 5.0283 0.0687 0.0764 30 1 4.4119 -1.1525 2.5338 31 1 5.5714 0.2053 2.3590 32 1 3.3229 3.1619 6.7252 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724217649.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:02 Heat of formation + Delta-G solvation = -66.887143 kcal Electronic energy + Delta-G solvation = -15038.104187 eV Core-core repulsion = 12578.764972 eV Total energy + Delta-G solvation = -2459.339215 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.98959 -36.99586 -35.01006 -32.36721 -31.03844 -27.93171 -26.88917 -24.29295 -23.93696 -22.09972 -20.20826 -18.54619 -16.90175 -16.38462 -15.99692 -15.37903 -14.76191 -14.55409 -13.96825 -13.07061 -12.89852 -12.69569 -12.44360 -11.95685 -11.66784 -11.52416 -11.12998 -11.01975 -10.85324 -10.71031 -10.14491 -9.96350 -9.73086 -9.68070 -9.39317 -9.22631 -8.56533 -8.22628 -6.09783 -4.17074 3.36773 3.42629 3.64313 4.00430 4.52116 4.76690 4.87485 4.90459 5.11394 5.24440 5.45319 5.50696 5.55451 5.63394 5.71567 5.77246 5.87550 5.93262 6.00777 6.18795 6.29165 6.45880 6.56305 6.71066 6.72198 6.79874 7.22058 7.46031 7.65291 8.27425 8.47677 8.92954 9.54358 11.01081 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.032976 B = 0.012315 C = 0.010905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.903403 B = 2273.018339 C = 2566.938989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.047 3.953 4 H 0.087 0.913 5 C -0.153 4.153 6 C -0.129 4.129 7 C 0.082 3.918 8 C -0.127 4.127 9 C -0.134 4.134 10 C 0.172 3.828 11 H 0.027 0.973 12 C -0.517 4.517 13 H 0.079 0.921 14 C 0.083 3.917 15 N -0.892 5.892 16 Si 0.872 3.128 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.234 1.234 20 O -0.359 6.359 21 H 0.081 0.919 22 H 0.040 0.960 23 H 0.036 0.964 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.734 -3.077 -13.963 15.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.291 6.291 3 C -0.012 4.012 4 H 0.105 0.895 5 C -0.191 4.191 6 C -0.167 4.167 7 C 0.040 3.960 8 C -0.164 4.164 9 C -0.171 4.171 10 C 0.117 3.883 11 H 0.044 0.956 12 C -0.553 4.553 13 H 0.097 0.903 14 C -0.121 4.121 15 N -0.530 5.530 16 Si 0.698 3.302 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.157 1.157 20 O -0.279 6.279 21 H 0.100 0.900 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.105 0.895 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.667 -2.920 -13.750 14.811 hybrid contribution -1.131 0.459 -0.151 1.230 sum -5.798 -2.462 -13.900 15.261 Atomic orbital electron populations 1.22740 0.82064 1.02222 0.99643 1.87902 1.18909 1.27765 1.94539 1.24452 0.95553 0.84941 0.96226 0.89489 1.23344 0.98305 1.00759 0.96701 1.22931 0.98653 0.99761 0.95319 1.23192 0.92274 0.93717 0.86820 1.22515 0.99057 0.96543 0.98296 1.23014 1.01010 1.00129 0.92987 1.21128 0.93596 0.84433 0.89103 0.95557 1.20969 1.05640 1.30193 0.98544 0.90261 1.25054 0.98510 0.94487 0.94084 1.69923 1.38360 1.33169 1.11522 0.86930 0.83675 0.77646 0.81904 1.21011 1.21679 1.15659 1.89169 1.92975 1.33166 1.12560 0.90043 0.94144 0.94551 0.89459 0.91391 0.89506 0.90544 0.90225 0.91768 0.91837 0.91313 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.85 101.05 1.10 1.50 16 2 O -0.37 -6.30 9.16 -35.23 -0.32 -6.62 16 3 C 0.05 0.80 4.09 -26.18 -0.11 0.69 16 4 H 0.09 1.54 7.88 -51.93 -0.41 1.13 16 5 C -0.15 -2.14 7.75 -25.65 -0.20 -2.34 16 6 C -0.13 -2.05 7.59 -26.04 -0.20 -2.25 16 7 C 0.08 1.58 1.51 -90.20 -0.14 1.45 16 8 C -0.13 -2.30 6.19 -25.42 -0.16 -2.46 16 9 C -0.13 -2.81 6.56 -24.61 -0.16 -2.97 16 10 C 0.17 4.33 2.52 -26.80 -0.07 4.27 16 11 H 0.03 0.68 7.46 -51.93 -0.39 0.30 16 12 C -0.52 -15.13 9.40 -34.44 -0.32 -15.45 16 13 H 0.08 2.46 8.01 -52.49 -0.42 2.04 16 14 C 0.08 2.47 5.47 -17.82 -0.10 2.37 16 15 N -0.89 -27.82 13.96 55.43 0.77 -27.04 16 16 Si 0.87 22.45 27.06 -169.99 -4.60 17.85 16 17 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 18 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 19 H -0.23 -5.87 5.61 56.52 0.32 -5.55 16 20 O -0.36 -8.79 8.49 -35.23 -0.30 -9.09 16 21 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 27 H 0.08 1.09 7.86 -51.93 -0.41 0.69 16 28 H 0.08 1.40 6.69 -51.93 -0.35 1.05 16 29 H 0.06 1.03 7.76 -51.93 -0.40 0.62 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16 32 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 259.42 15.07 3.91 3.91 Total: -1.00 -31.87 259.42 -5.86 -37.73 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -4.97 Total: -1.54 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -0.35 Total: -15.20 kcal Atomic # 7 Polarization: -27.82 SS G_CDS: 0.77 Total: -27.04 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.62 Total: -15.71 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.60 Total: 17.85 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.87 -5.86 -37.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724217649.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.155 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds