Wall clock time and date at job start Mon Mar 30 2020 02:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47990 * 2 1 4 4 C 1.53099 * 109.47978 * 239.98403 * 2 1 3 5 5 C 1.53178 * 109.16074 * 182.40939 * 4 2 1 6 6 H 1.08999 * 109.54333 * 176.93425 * 5 4 2 7 7 C 1.50702 * 109.54497 * 297.11174 * 5 4 2 8 8 O 1.21433 * 120.00299 * 100.89814 * 7 5 4 9 9 C 1.41030 * 119.99765 * 280.90434 * 7 5 4 10 10 H 1.08004 * 119.99958 * 7.04051 * 9 7 5 11 11 C 1.40465 * 119.99877 * 187.04529 * 9 7 5 12 12 N 1.30514 * 119.99887 * 7.05918 * 11 9 7 13 13 Si 1.86800 * 119.99919 * 187.05993 * 11 9 7 14 14 H 1.48496 * 109.46860 * 84.98860 * 13 11 9 15 15 H 1.48503 * 109.46894 * 324.99264 * 13 11 9 16 16 H 1.48496 * 109.46982 * 204.98962 * 13 11 9 17 17 C 1.53176 * 109.03698 * 56.97708 * 5 4 2 18 18 C 1.53093 * 109.16569 * 303.01711 * 17 5 4 19 19 H 1.09002 * 109.49155 * 297.62434 * 18 17 5 20 20 C 1.52998 * 109.48196 * 177.59334 * 18 17 5 21 21 O 1.42893 * 109.48208 * 120.03798 * 2 1 3 22 22 H 1.08997 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.46882 * 300.02210 * 1 2 3 24 24 H 1.09003 * 109.46902 * 60.02041 * 1 2 3 25 25 H 1.08993 * 109.52332 * 62.50167 * 4 2 1 26 26 H 1.08994 * 109.51742 * 302.31295 * 4 2 1 27 27 H 0.97006 * 120.00024 * 179.97438 * 12 11 9 28 28 H 1.09002 * 109.52332 * 62.92733 * 17 5 4 29 29 H 1.09001 * 109.52370 * 183.11245 * 17 5 4 30 30 H 1.09001 * 109.46908 * 300.05823 * 20 18 17 31 31 H 1.08992 * 109.47248 * 60.05583 * 20 18 17 32 32 H 1.08998 * 109.46859 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7220 -1.2498 5 6 3.5711 -0.7706 -1.2123 6 1 3.9393 -1.3309 -2.0718 7 6 4.1212 0.6318 -1.2517 8 8 4.5039 1.1629 -0.2289 9 6 4.1914 1.3276 -2.4764 10 1 3.7485 0.9027 -3.3650 11 6 4.8376 2.5732 -2.5404 12 7 5.4910 3.0234 -1.5042 13 14 4.7615 3.5853 -4.1087 14 1 3.5144 4.3913 -4.1175 15 1 4.7728 2.6780 -5.2843 16 1 5.9367 4.4908 -4.1708 17 6 4.0176 -1.4601 0.0806 18 6 3.4307 -0.7095 1.2789 19 1 3.8192 0.3088 1.2960 20 6 3.8228 -1.4269 2.5721 21 8 2.0066 -0.6743 1.1662 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5142 0.8897 24 1 -0.3633 0.5135 -0.8902 25 1 1.7149 -0.1839 -2.1399 26 1 1.6443 -1.7371 -1.2713 27 1 5.9375 3.8834 -1.5485 28 1 3.6613 -2.4902 0.0859 29 1 5.1058 -1.4498 0.1418 30 1 3.4345 -2.4453 2.5547 31 1 4.9090 -1.4537 2.6579 32 1 3.4044 -0.8926 3.4251 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724391010.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:59 Heat of formation + Delta-G solvation = -108.825906 kcal Electronic energy + Delta-G solvation = -15012.501219 eV Core-core repulsion = 12551.343403 eV Total energy + Delta-G solvation = -2461.157817 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.25406 -36.25196 -33.06932 -32.86993 -32.16142 -29.14303 -26.99040 -25.59618 -22.77162 -21.08871 -20.53757 -18.50604 -16.26821 -15.69060 -15.13311 -14.97532 -13.92809 -13.80368 -13.64585 -12.94344 -12.40697 -12.28278 -11.98622 -11.67770 -11.54702 -11.42042 -11.27607 -11.07476 -11.00353 -10.67182 -10.35118 -10.26519 -10.03835 -9.75727 -9.49280 -8.93832 -8.51779 -7.19410 -6.24094 -4.89914 3.03375 3.12251 3.14680 4.01291 4.19694 4.44007 5.31508 5.45630 5.65578 5.68559 5.77228 5.88096 5.96457 6.05376 6.16014 6.22080 6.24108 6.32279 6.38382 6.54726 6.58847 6.70990 6.84061 6.88022 6.94633 7.01071 7.16538 7.27189 8.08917 8.13240 8.81607 8.89715 10.32437 10.55684 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.037722 B = 0.010527 C = 0.009334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.094572 B = 2659.179425 C = 2999.085229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.088 3.912 3 H 0.065 0.935 4 C -0.124 4.124 5 C -0.137 4.137 6 H 0.068 0.932 7 C 0.374 3.626 8 O -0.541 6.541 9 C -0.536 4.536 10 H 0.068 0.932 11 C 0.086 3.914 12 N -0.742 5.742 13 Si 0.902 3.098 14 H -0.268 1.268 15 H -0.263 1.263 16 H -0.278 1.278 17 C -0.120 4.120 18 C 0.066 3.934 19 H 0.111 0.889 20 C -0.138 4.138 21 O -0.392 6.392 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.273 0.727 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.799 -4.638 0.547 6.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.031 3.969 3 H 0.083 0.917 4 C -0.162 4.162 5 C -0.156 4.156 6 H 0.087 0.913 7 C 0.269 3.731 8 O -0.431 6.431 9 C -0.567 4.567 10 H 0.086 0.914 11 C -0.137 4.137 12 N -0.370 5.370 13 Si 0.726 3.274 14 H -0.193 1.193 15 H -0.187 1.187 16 H -0.203 1.203 17 C -0.158 4.158 18 C 0.009 3.991 19 H 0.128 0.872 20 C -0.196 4.196 21 O -0.312 6.312 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.631 -4.377 1.288 6.501 hybrid contribution 0.151 0.389 -1.272 1.339 sum -4.480 -3.988 0.016 5.998 Atomic orbital electron populations 1.21744 0.94397 1.01835 1.01750 1.21966 0.93425 0.96321 0.85210 0.91659 1.21960 0.95747 0.99981 0.98531 1.21792 0.95396 1.01446 0.96986 0.91313 1.19374 0.78855 0.85190 0.89667 1.90235 1.48095 1.68951 1.35783 1.20781 1.34811 1.03667 0.97487 0.91390 1.25981 0.93087 0.97683 0.96947 1.69896 1.20853 1.17041 1.29195 0.86472 0.78560 0.79883 0.82505 1.19339 1.18704 1.20312 1.21894 1.00581 0.97668 0.95647 1.22669 0.80343 1.02800 0.93255 0.87155 1.21742 1.00750 0.99942 0.97137 1.87692 1.22119 1.78239 1.43164 0.92598 0.92514 0.91529 0.91050 0.92713 0.91558 0.93501 0.91813 0.93244 0.91722 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.56 37.16 0.36 -1.89 16 2 C 0.09 1.79 3.04 -26.68 -0.08 1.71 16 3 H 0.07 1.53 7.23 -51.93 -0.38 1.16 16 4 C -0.12 -2.47 4.90 -26.59 -0.13 -2.60 16 5 C -0.14 -3.05 2.91 -91.59 -0.27 -3.32 16 6 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 7 C 0.37 10.09 4.97 -33.25 -0.17 9.93 16 8 O -0.54 -16.10 11.85 5.42 0.06 -16.04 16 9 C -0.54 -14.58 9.21 -37.69 -0.35 -14.93 16 10 H 0.07 1.73 7.86 -52.48 -0.41 1.31 16 11 C 0.09 2.30 5.48 -17.27 -0.09 2.21 16 12 N -0.74 -21.04 11.81 55.57 0.66 -20.39 16 13 Si 0.90 19.31 29.57 -169.99 -5.03 14.29 16 14 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 15 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 16 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 17 C -0.12 -2.51 4.69 -26.59 -0.12 -2.63 16 18 C 0.07 1.40 2.97 -26.68 -0.08 1.32 16 19 H 0.11 2.77 5.24 -51.93 -0.27 2.49 16 20 C -0.14 -2.40 9.56 37.16 0.36 -2.04 16 21 O -0.39 -8.31 10.05 -35.23 -0.35 -8.66 16 22 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 260.09 15.07 3.92 3.92 Total: -1.00 -30.28 260.09 -6.16 -36.44 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.84 Total: 2.68 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -0.58 Total: -12.24 kcal Atomic # 7 Polarization: -21.04 SS G_CDS: 0.66 Total: -20.39 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.29 Total: -24.70 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.28 -6.16 -36.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724391010.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.387 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds