Wall clock time and date at job start Mon Mar 30 2020 02:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47990 * 2 1 4 4 C 1.53099 * 109.47978 * 239.98403 * 2 1 3 5 5 C 1.53178 * 109.16074 * 182.40939 * 4 2 1 6 6 H 1.08999 * 109.54333 * 176.93425 * 5 4 2 7 7 C 1.50702 * 109.54497 * 297.11174 * 5 4 2 8 8 O 1.21433 * 120.00299 * 100.89814 * 7 5 4 9 9 C 1.41030 * 119.99765 * 280.90434 * 7 5 4 10 10 H 1.08004 * 119.99958 * 7.04051 * 9 7 5 11 11 C 1.40465 * 119.99877 * 187.04529 * 9 7 5 12 12 N 1.30514 * 119.99887 * 7.05918 * 11 9 7 13 13 Si 1.86800 * 119.99919 * 187.05993 * 11 9 7 14 14 H 1.48496 * 109.46860 * 84.98860 * 13 11 9 15 15 H 1.48503 * 109.46894 * 324.99264 * 13 11 9 16 16 H 1.48496 * 109.46982 * 204.98962 * 13 11 9 17 17 C 1.53176 * 109.03698 * 56.97708 * 5 4 2 18 18 C 1.53093 * 109.16569 * 303.01711 * 17 5 4 19 19 H 1.09002 * 109.49155 * 297.62434 * 18 17 5 20 20 C 1.52998 * 109.48196 * 177.59334 * 18 17 5 21 21 O 1.42893 * 109.48208 * 120.03798 * 2 1 3 22 22 H 1.08997 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.46882 * 300.02210 * 1 2 3 24 24 H 1.09003 * 109.46902 * 60.02041 * 1 2 3 25 25 H 1.08993 * 109.52332 * 62.50167 * 4 2 1 26 26 H 1.08994 * 109.51742 * 302.31295 * 4 2 1 27 27 H 0.97006 * 120.00024 * 179.97438 * 12 11 9 28 28 H 1.09002 * 109.52332 * 62.92733 * 17 5 4 29 29 H 1.09001 * 109.52370 * 183.11245 * 17 5 4 30 30 H 1.09001 * 109.46908 * 300.05823 * 20 18 17 31 31 H 1.08992 * 109.47248 * 60.05583 * 20 18 17 32 32 H 1.08998 * 109.46859 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7220 -1.2498 5 6 3.5711 -0.7706 -1.2123 6 1 3.9393 -1.3309 -2.0718 7 6 4.1212 0.6318 -1.2517 8 8 4.5039 1.1629 -0.2289 9 6 4.1914 1.3276 -2.4764 10 1 3.7485 0.9027 -3.3650 11 6 4.8376 2.5732 -2.5404 12 7 5.4910 3.0234 -1.5042 13 14 4.7615 3.5853 -4.1087 14 1 3.5144 4.3913 -4.1175 15 1 4.7728 2.6780 -5.2843 16 1 5.9367 4.4908 -4.1708 17 6 4.0176 -1.4601 0.0806 18 6 3.4307 -0.7095 1.2789 19 1 3.8192 0.3088 1.2960 20 6 3.8228 -1.4269 2.5721 21 8 2.0066 -0.6743 1.1662 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5142 0.8897 24 1 -0.3633 0.5135 -0.8902 25 1 1.7149 -0.1839 -2.1399 26 1 1.6443 -1.7371 -1.2713 27 1 5.9375 3.8834 -1.5485 28 1 3.6613 -2.4902 0.0859 29 1 5.1058 -1.4498 0.1418 30 1 3.4345 -2.4453 2.5547 31 1 4.9090 -1.4537 2.6579 32 1 3.4044 -0.8926 3.4251 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724391010.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:59 Heat of formation + Delta-G solvation = -127.967974 kcal Electronic energy + Delta-G solvation = -15013.331282 eV Core-core repulsion = 12551.343403 eV Total energy + Delta-G solvation = -2461.987879 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.99085 -38.20872 -34.89712 -34.56305 -34.02448 -30.66069 -28.98494 -27.13117 -24.55997 -22.65060 -22.30568 -20.38127 -18.32725 -17.33683 -17.01310 -16.63548 -15.62047 -15.49402 -15.35403 -14.74348 -14.13244 -13.84489 -13.58182 -13.22021 -13.13025 -12.95692 -12.79982 -12.75139 -12.61614 -12.48822 -12.20474 -12.05038 -11.68583 -11.43333 -11.19297 -10.94242 -10.22409 -9.22942 -8.25748 -7.04331 1.33280 1.36162 1.50900 2.19272 2.21104 2.88176 3.37130 3.89267 4.01846 4.09533 4.13712 4.36015 4.41960 4.56236 4.62457 4.75379 4.77977 4.86382 4.88975 5.03084 5.05437 5.13733 5.20098 5.23544 5.25827 5.29547 5.40447 5.49228 6.01272 6.47291 6.74945 6.85946 8.30734 8.53404 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.037722 B = 0.010527 C = 0.009334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.094572 B = 2659.179425 C = 2999.085229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.083 3.917 3 H 0.018 0.982 4 C -0.118 4.118 5 C -0.139 4.139 6 H 0.078 0.922 7 C 0.355 3.645 8 O -0.579 6.579 9 C -0.566 4.566 10 H 0.081 0.919 11 C 0.032 3.968 12 N -0.791 5.791 13 Si 0.985 3.015 14 H -0.261 1.261 15 H -0.249 1.249 16 H -0.270 1.270 17 C -0.116 4.116 18 C 0.063 3.937 19 H 0.064 0.936 20 C -0.131 4.131 21 O -0.393 6.393 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.280 0.720 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 -5.697 -0.648 8.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.025 3.975 3 H 0.036 0.964 4 C -0.155 4.155 5 C -0.158 4.158 6 H 0.096 0.904 7 C 0.253 3.747 8 O -0.472 6.472 9 C -0.597 4.597 10 H 0.099 0.901 11 C -0.187 4.187 12 N -0.420 5.420 13 Si 0.804 3.196 14 H -0.185 1.185 15 H -0.172 1.172 16 H -0.194 1.194 17 C -0.154 4.154 18 C 0.006 3.994 19 H 0.082 0.918 20 C -0.188 4.188 21 O -0.313 6.313 22 H 0.095 0.905 23 H 0.079 0.921 24 H 0.101 0.899 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.904 -5.456 0.090 8.040 hybrid contribution 0.563 0.719 -0.861 1.255 sum -5.341 -4.737 -0.771 7.181 Atomic orbital electron populations 1.21719 0.90790 1.03490 1.02862 1.22069 0.96178 0.93830 0.85388 0.96367 1.21937 0.93670 1.01623 0.98298 1.21727 0.97291 0.98610 0.98205 0.90385 1.20037 0.78237 0.87230 0.89204 1.90234 1.49538 1.70549 1.36839 1.21282 1.35430 1.04844 0.98188 0.90081 1.27123 0.91907 0.98760 1.00912 1.70023 1.21932 1.17929 1.32088 0.85211 0.78927 0.77973 0.77439 1.18538 1.17224 1.19413 1.21860 0.99840 0.98903 0.94753 1.22556 0.80456 1.00911 0.95520 0.91831 1.21695 1.01435 1.00609 0.95074 1.87697 1.21884 1.77963 1.43756 0.90549 0.92096 0.89870 0.90777 0.89689 0.90936 0.90548 0.93089 0.91085 0.90907 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 9.56 71.98 0.69 -3.24 16 2 C 0.08 3.33 3.04 30.63 0.09 3.43 16 3 H 0.02 0.89 7.23 -2.39 -0.02 0.88 16 4 C -0.12 -4.48 4.90 30.69 0.15 -4.33 16 5 C -0.14 -6.17 2.91 -11.42 -0.03 -6.20 16 6 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 7 C 0.36 19.76 4.97 26.37 0.13 19.90 16 8 O -0.58 -36.29 11.85 -3.51 -0.04 -36.33 16 9 C -0.57 -31.29 9.21 23.50 0.22 -31.07 16 10 H 0.08 4.10 7.86 -2.91 -0.02 4.08 16 11 C 0.03 1.73 5.48 85.43 0.47 2.20 16 12 N -0.79 -46.35 11.81 21.91 0.26 -46.09 16 13 Si 0.99 39.54 29.57 68.60 2.03 41.57 16 14 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 15 H -0.25 -9.35 7.11 99.48 0.71 -8.64 16 16 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 17 C -0.12 -4.77 4.69 30.68 0.14 -4.63 16 18 C 0.06 2.67 2.97 30.62 0.09 2.76 16 19 H 0.06 3.36 5.24 -2.39 -0.01 3.35 16 20 C -0.13 -4.38 9.56 71.98 0.69 -3.69 16 21 O -0.39 -16.36 10.05 -148.98 -1.50 -17.86 16 22 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.28 14.81 8.29 -92.70 -0.77 14.04 16 28 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -67.78 260.09 4.47 -63.31 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 1.09 Total: 20.28 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 2.64 Total: -24.89 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.26 Total: -46.09 kcal Atomic # 8 Polarization: -52.65 SS G_CDS: -1.54 Total: -54.18 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -67.78 4.47 -63.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724391010.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.660 kcal (2) G-P(sol) polarization free energy of solvation -67.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds