Wall clock time and date at job start Mon Mar 30 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.49026 * 2 1 4 4 C 1.53091 * 109.47927 * 120.02713 * 2 1 3 5 5 C 1.53179 * 109.16328 * 62.37351 * 4 2 1 6 6 C 1.50706 * 109.54089 * 176.84674 * 5 4 2 7 7 O 1.21435 * 119.99988 * 335.00200 * 6 5 4 8 8 C 1.41023 * 119.99786 * 155.00347 * 6 5 4 9 9 H 1.08005 * 120.00075 * 359.97438 * 8 6 5 10 10 C 1.40465 * 120.00140 * 180.02562 * 8 6 5 11 11 N 1.30525 * 119.99564 * 359.97438 * 10 8 6 12 12 Si 1.86789 * 120.00122 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47139 * 179.97438 * 12 10 8 14 14 H 1.48508 * 109.47118 * 299.99350 * 12 10 8 15 15 H 1.48498 * 109.47338 * 59.99498 * 12 10 8 16 16 C 1.53177 * 109.03480 * 56.98097 * 5 4 2 17 17 C 1.53083 * 109.16426 * 303.01879 * 16 5 4 18 18 H 1.09006 * 109.48265 * 297.62294 * 17 16 5 19 19 C 1.53002 * 109.48171 * 177.59302 * 17 16 5 20 20 O 1.42898 * 109.47948 * 239.96698 * 2 1 3 21 21 H 1.08998 * 109.47362 * 299.97301 * 1 2 3 22 22 H 1.09005 * 109.47270 * 59.97401 * 1 2 3 23 23 H 1.09004 * 109.47108 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.52281 * 302.46788 * 4 2 1 25 25 H 1.09003 * 109.52017 * 182.28132 * 4 2 1 26 26 H 1.08999 * 109.54601 * 297.02423 * 5 4 2 27 27 H 0.97001 * 119.99503 * 179.97438 * 11 10 8 28 28 H 1.09000 * 109.52171 * 62.92724 * 16 5 4 29 29 H 1.09002 * 109.51728 * 183.10912 * 16 5 4 30 30 H 1.08998 * 109.47241 * 300.05860 * 19 17 16 31 31 H 1.08998 * 109.47333 * 60.05643 * 19 17 16 32 32 H 1.09004 * 109.47067 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 1.5757 -2.1813 1.2122 6 6 2.1381 -2.9201 2.3992 7 8 3.1574 -2.5286 2.9308 8 6 1.4808 -4.0661 2.8926 9 1 0.5741 -4.4140 2.4201 10 6 2.0047 -4.7544 3.9993 11 7 3.1002 -4.3336 4.5707 12 14 1.1336 -6.2718 4.6533 13 1 1.8831 -6.8099 5.8170 14 1 -0.2431 -5.9089 5.0756 15 1 1.0686 -7.3034 3.5871 16 6 2.0764 -2.8322 -0.0808 17 6 1.5646 -2.0285 -1.2789 18 1 0.4750 -2.0551 -1.2958 19 6 2.1100 -2.6374 -2.5723 20 8 2.0065 -0.6743 -1.1663 21 1 -0.3634 0.5134 0.8902 22 1 -0.3634 0.5143 -0.8898 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6421 -0.2357 2.1398 25 1 3.1298 -0.6874 1.2710 26 1 0.4867 -2.2180 1.2424 27 1 3.4618 -4.8088 5.3352 28 1 3.1664 -2.8400 -0.0862 29 1 1.7037 -3.8547 -0.1419 30 1 3.1995 -2.6112 -2.5550 31 1 1.7727 -3.6703 -2.6581 32 1 1.7457 -2.0647 -3.4253 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724403646.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:21 Heat of formation + Delta-G solvation = -110.958843 kcal Electronic energy + Delta-G solvation = -14734.946624 eV Core-core repulsion = 12273.696316 eV Total energy + Delta-G solvation = -2461.250308 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.47976 -36.60271 -33.03117 -32.85715 -32.27367 -29.12905 -26.98011 -26.00556 -23.20431 -21.97414 -19.60436 -18.39989 -16.38751 -15.79003 -15.59993 -14.99862 -14.37435 -14.02430 -13.50374 -12.93480 -12.79065 -12.35386 -12.25632 -11.93254 -11.66234 -11.46600 -11.28025 -11.17590 -10.88062 -10.75855 -10.43378 -10.40173 -10.10431 -9.76680 -9.42949 -8.97567 -8.89408 -7.29478 -6.18922 -4.87425 3.06782 3.13271 3.15243 4.03676 4.16631 4.24344 5.17899 5.25279 5.41543 5.45796 5.55590 5.59766 5.66589 5.81752 5.96125 6.02068 6.07141 6.10326 6.24094 6.36946 6.39400 6.52366 6.64744 6.76234 6.90435 7.00396 7.18609 7.27999 7.72409 8.10350 8.85431 8.94150 10.38026 10.62384 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.041684 B = 0.008747 C = 0.008236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.554281 B = 3200.291612 C = 3398.929786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.093 0.907 4 C -0.128 4.128 5 C -0.128 4.128 6 C 0.371 3.629 7 O -0.544 6.544 8 C -0.536 4.536 9 H 0.066 0.934 10 C 0.083 3.917 11 N -0.741 5.741 12 Si 0.903 3.097 13 H -0.279 1.279 14 H -0.266 1.266 15 H -0.265 1.265 16 C -0.126 4.126 17 C 0.082 3.918 18 H 0.055 0.945 19 C -0.142 4.142 20 O -0.381 6.381 21 H 0.063 0.937 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.272 0.728 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.162 2.722 -8.353 10.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.029 3.971 3 H 0.111 0.889 4 C -0.165 4.165 5 C -0.148 4.148 6 C 0.265 3.735 7 O -0.432 6.432 8 C -0.567 4.567 9 H 0.085 0.915 10 C -0.140 4.140 11 N -0.370 5.370 12 Si 0.727 3.273 13 H -0.204 1.204 14 H -0.190 1.190 15 H -0.190 1.190 16 C -0.164 4.164 17 C 0.025 3.975 18 H 0.073 0.927 19 C -0.199 4.199 20 O -0.301 6.301 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.403 3.019 -8.126 9.722 hybrid contribution -0.815 -0.952 0.548 1.368 sum -5.218 2.067 -7.578 9.430 Atomic orbital electron populations 1.22443 0.97073 1.02805 1.01778 1.22197 0.92993 0.95900 0.86004 0.88911 1.21954 1.02315 0.95990 0.96282 1.21746 1.00153 0.94929 0.97956 1.19385 0.85846 0.85288 0.82992 1.90389 1.25502 1.68223 1.59133 1.20791 1.10786 1.11774 1.13376 0.91529 1.26020 0.94088 0.97967 0.95942 1.69950 1.16105 1.35096 1.15862 0.86503 0.80262 0.81739 0.78795 1.20360 1.19026 1.19011 1.21997 1.01698 0.99216 0.93475 1.22124 0.97599 0.82467 0.95319 0.92676 1.21749 1.02030 1.00088 0.96064 1.87875 1.74161 1.24718 1.43336 0.91748 0.92678 0.91651 0.91754 0.90750 0.91551 0.91646 0.91514 0.91076 0.92005 0.91338 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.66 8.65 37.16 0.32 -2.33 16 2 C 0.09 1.45 3.91 -26.68 -0.10 1.34 16 3 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 4 C -0.13 -2.61 4.52 -26.59 -0.12 -2.73 16 5 C -0.13 -2.84 2.18 -91.59 -0.20 -3.04 16 6 C 0.37 10.36 6.02 -33.25 -0.20 10.16 16 7 O -0.54 -17.30 14.56 5.42 0.08 -17.22 16 8 C -0.54 -14.90 9.21 -37.69 -0.35 -15.25 16 9 H 0.07 1.71 7.85 -52.48 -0.41 1.29 16 10 C 0.08 2.26 5.50 -17.27 -0.10 2.17 16 11 N -0.74 -21.69 11.72 55.57 0.65 -21.04 16 12 Si 0.90 19.60 29.56 -169.99 -5.03 14.58 16 13 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 14 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 15 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 16 C -0.13 -2.49 4.69 -26.60 -0.12 -2.62 16 17 C 0.08 1.36 2.94 -26.69 -0.08 1.29 16 18 H 0.06 0.86 6.34 -51.93 -0.33 0.53 16 19 C -0.14 -1.95 9.56 37.16 0.36 -1.60 16 20 O -0.38 -6.78 10.24 -35.23 -0.36 -7.14 16 21 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.99 4.98 -51.93 -0.26 0.73 16 24 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 25 H 0.07 1.68 7.77 -51.93 -0.40 1.28 16 26 H 0.07 1.39 6.61 -51.93 -0.34 1.05 16 27 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 28 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 259.70 15.07 3.91 3.91 Total: -1.00 -32.00 259.70 -6.02 -38.02 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.68 Total: 1.49 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.59 Total: -12.60 kcal Atomic # 7 Polarization: -21.69 SS G_CDS: 0.65 Total: -21.04 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.28 Total: -24.36 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.00 -6.02 -38.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724403646.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.935 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds