Wall clock time and date at job start Mon Mar 30 2020 02:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 115.55823 * 2 1 4 4 C 1.53076 * 117.51386 * 214.29956 * 2 1 3 5 5 C 1.53003 * 117.49065 * 145.03607 * 4 2 1 6 6 C 1.52995 * 117.53335 * 359.97438 * 4 2 1 7 7 C 1.52995 * 117.50193 * 145.68488 * 2 1 3 8 8 C 1.50704 * 117.49864 * 0.02562 * 7 2 1 9 9 H 1.07996 * 119.99639 * 329.06074 * 8 7 2 10 10 C 1.37881 * 119.99972 * 149.33590 * 8 7 2 11 11 N 1.31508 * 119.99973 * 355.17823 * 10 8 7 12 12 Si 1.86794 * 119.99711 * 175.18102 * 10 8 7 13 13 H 1.48503 * 109.47218 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47180 * 120.00312 * 12 10 8 15 15 H 1.48501 * 109.46949 * 239.99751 * 12 10 8 16 16 C 1.50697 * 117.50230 * 215.00519 * 7 2 1 17 17 O 1.20831 * 119.99801 * 259.24338 * 16 7 2 18 18 O 1.34227 * 120.00168 * 79.23863 * 16 7 2 19 19 H 1.09003 * 109.47597 * 325.69998 * 1 2 3 20 20 H 1.09003 * 109.47308 * 85.70288 * 1 2 3 21 21 H 1.08996 * 109.47278 * 205.70088 * 1 2 3 22 22 H 1.09001 * 109.47025 * 154.30220 * 3 2 1 23 23 H 1.09005 * 109.47099 * 274.29926 * 3 2 1 24 24 H 1.08995 * 109.47230 * 34.29675 * 3 2 1 25 25 H 1.09001 * 109.46520 * 133.39381 * 5 4 2 26 26 H 1.08997 * 109.47071 * 253.39055 * 5 4 2 27 27 H 1.08992 * 109.47457 * 13.39434 * 5 4 2 28 28 H 1.09005 * 109.47156 * 357.47584 * 6 4 2 29 29 H 1.09002 * 109.47185 * 117.47775 * 6 4 2 30 30 H 1.08998 * 109.47061 * 237.47551 * 6 4 2 31 31 H 0.96999 * 120.00064 * 179.97438 * 11 10 8 32 32 H 0.96698 * 117.00271 * 179.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2371 -1.1215 -0.7650 5 6 3.5499 -0.7762 -1.4710 6 6 1.3606 -2.1578 -1.4712 7 6 2.2364 -1.1209 0.7650 8 6 1.3721 -2.1408 1.4605 9 1 0.4050 -1.8553 1.8473 10 6 1.8183 -3.4371 1.6078 11 7 2.9547 -3.8076 1.0596 12 14 0.8084 -4.6669 2.5861 13 1 -0.4191 -4.0048 3.0965 14 1 0.4301 -5.8048 1.7103 15 1 1.6117 -5.1685 3.7299 16 6 3.5289 -0.7808 1.4613 17 8 4.5846 -1.0786 0.9545 18 8 3.5074 -0.1471 2.6444 19 1 -0.3634 0.8489 0.5791 20 1 -0.3634 0.0770 -1.0248 21 1 -0.3633 -0.9260 0.4456 22 1 3.1822 1.3086 0.4456 23 1 2.2773 1.7414 -1.0248 24 1 1.5809 2.0744 0.5790 25 1 4.2935 -1.5418 -1.2499 26 1 3.3829 -0.7319 -2.5472 27 1 3.9084 0.1909 -1.1188 28 1 0.3109 -1.9436 -1.2699 29 1 1.5407 -2.1146 -2.5454 30 1 1.6057 -3.1534 -1.1015 31 1 3.2688 -4.7195 1.1636 32 1 4.3616 0.0494 3.0527 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885392657.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:12 Heat of formation + Delta-G solvation = -98.748677 kcal Electronic energy + Delta-G solvation = -15397.828762 eV Core-core repulsion = 12937.107927 eV Total energy + Delta-G solvation = -2460.720835 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.43821 -39.15754 -36.58372 -34.50223 -31.73671 -29.83419 -29.38977 -26.85375 -26.30743 -24.09847 -20.52302 -19.15366 -18.28330 -18.03914 -16.86110 -16.36570 -15.88643 -15.46593 -14.64730 -14.52723 -14.28023 -13.86700 -13.32580 -13.21975 -12.94411 -12.83478 -12.76516 -12.63563 -12.52658 -12.39109 -12.17128 -12.04915 -11.72985 -11.32559 -10.91819 -10.62664 -9.83644 -9.82174 -8.12158 -6.24486 1.39954 1.44749 1.54881 1.76994 2.41245 2.64846 3.04811 3.32306 4.13784 4.19529 4.41030 4.43659 4.60931 4.78377 4.88260 4.99352 5.07153 5.13392 5.20788 5.23928 5.25229 5.34794 5.42489 5.44420 5.58587 5.67677 5.82826 5.94292 6.00591 6.25911 6.77631 7.39928 7.54012 8.93429 Molecular weight = 212.12amu Principal moments of inertia in cm(-1) A = 0.028260 B = 0.015200 C = 0.013646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.571429 B = 1841.656151 C = 2051.398511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.119 4.119 3 C -0.107 4.107 4 C -0.099 4.099 5 C -0.098 4.098 6 C -0.089 4.089 7 C 0.020 3.980 8 C -0.491 4.491 9 H 0.075 0.925 10 C 0.026 3.974 11 N -0.892 5.892 12 Si 0.949 3.051 13 H -0.258 1.258 14 H -0.280 1.280 15 H -0.289 1.289 16 C 0.519 3.481 17 O -0.555 6.555 18 O -0.522 6.522 19 H 0.063 0.937 20 H 0.066 0.934 21 H 0.060 0.940 22 H 0.029 0.971 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.034 0.966 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.258 0.742 32 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.714 6.976 -1.785 8.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.119 4.119 3 C -0.164 4.164 4 C -0.099 4.099 5 C -0.155 4.155 6 C -0.146 4.146 7 C 0.019 3.981 8 C -0.528 4.528 9 H 0.092 0.908 10 C -0.176 4.176 11 N -0.528 5.528 12 Si 0.774 3.226 13 H -0.182 1.182 14 H -0.206 1.206 15 H -0.216 1.216 16 C 0.364 3.636 17 O -0.446 6.446 18 O -0.333 6.333 19 H 0.082 0.918 20 H 0.084 0.916 21 H 0.079 0.921 22 H 0.048 0.952 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -3.694 6.657 -2.131 7.906 hybrid contribution 0.789 -1.015 1.016 1.639 sum -2.905 5.642 -1.115 6.443 Atomic orbital electron populations 1.21292 0.91054 1.02293 1.01570 1.22085 0.96047 0.90357 1.03409 1.21351 0.98633 0.94358 1.02069 1.21678 0.96735 0.98347 0.93160 1.21235 0.95432 1.00026 0.98815 1.21038 0.98565 0.97698 0.97252 1.18796 0.89921 0.98304 0.91120 1.20484 1.02525 0.92350 1.37469 0.90756 1.25758 0.95965 1.00026 0.95834 1.70236 1.21494 1.18234 1.42883 0.85636 0.79310 0.79186 0.78433 1.18218 1.20608 1.21564 1.23833 0.91741 0.70358 0.77624 1.90512 1.34944 1.51992 1.67130 1.84625 1.40608 1.71586 1.36506 0.91809 0.91560 0.92126 0.95207 0.90997 0.90698 0.94643 0.92025 0.93485 0.91923 0.93039 0.94164 0.93301 0.73954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.58 8.16 71.98 0.59 -2.99 16 2 C -0.12 -4.67 2.70 -52.16 -0.14 -4.81 16 3 C -0.11 -3.59 8.21 71.98 0.59 -3.00 16 4 C -0.10 -4.33 2.70 -52.15 -0.14 -4.48 16 5 C -0.10 -4.16 7.95 71.98 0.57 -3.59 16 6 C -0.09 -3.73 8.85 71.98 0.64 -3.09 16 7 C 0.02 0.97 1.79 -53.67 -0.10 0.87 16 8 C -0.49 -25.33 6.73 25.60 0.17 -25.16 16 9 H 0.07 3.73 6.54 -2.91 -0.02 3.72 16 10 C 0.03 1.40 4.81 84.66 0.41 1.81 16 11 N -0.89 -51.09 12.57 21.45 0.27 -50.82 16 12 Si 0.95 42.22 29.54 68.60 2.03 44.25 16 13 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 14 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 15 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 16 C 0.52 25.82 4.96 71.23 0.35 26.17 16 17 O -0.56 -30.02 15.05 21.95 0.33 -29.69 16 18 O -0.52 -22.23 13.42 -51.39 -0.69 -22.92 16 19 H 0.06 1.88 7.92 -2.39 -0.02 1.87 16 20 H 0.07 1.96 7.87 -2.39 -0.02 1.94 16 21 H 0.06 2.29 5.33 -2.39 -0.01 2.28 16 22 H 0.03 1.08 5.79 -2.39 -0.01 1.07 16 23 H 0.07 2.11 8.08 -2.38 -0.02 2.09 16 24 H 0.07 2.17 7.92 -2.39 -0.02 2.15 16 25 H 0.03 1.73 7.12 -2.39 -0.02 1.72 16 26 H 0.06 2.21 7.96 -2.39 -0.02 2.19 16 27 H 0.05 1.90 5.78 -2.39 -0.01 1.89 16 28 H 0.06 2.43 5.90 -2.38 -0.01 2.41 16 29 H 0.05 1.87 7.90 -2.39 -0.02 1.85 16 30 H 0.04 1.95 7.02 -2.39 -0.02 1.94 16 31 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 32 H 0.40 12.91 9.10 -74.06 -0.67 12.24 16 Total: -1.00 -64.00 257.34 5.33 -58.67 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 0.46 Total: 18.78 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 2.94 Total: -18.27 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.27 Total: -50.82 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.36 Total: -52.61 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -64.00 5.33 -58.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885392657.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.079 kcal (2) G-P(sol) polarization free energy of solvation -64.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds