Wall clock time and date at job start Mon Mar 30 2020 02:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86791 * 120.00149 * 2 1 4 4 H 1.48505 * 109.47255 * 239.99922 * 3 2 1 5 5 H 1.48495 * 109.47206 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47145 * 120.00329 * 3 2 1 7 7 C 1.38812 * 119.99640 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00256 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00145 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47253 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.79251 * 29.02567 * 11 10 9 13 13 C 1.53061 * 109.63094 * 268.52508 * 11 10 9 14 14 C 1.51791 * 110.74888 * 325.22103 * 13 11 10 15 15 C 1.51779 * 113.80872 * 293.18640 * 14 13 11 16 16 C 1.52988 * 110.88015 * 66.99661 * 15 14 13 17 17 N 1.47184 * 108.80407 * 273.45552 * 16 15 14 18 18 C 1.33632 * 120.25116 * 71.79585 * 17 16 15 19 19 O 1.21282 * 119.83084 * 179.84703 * 18 17 16 20 20 H 0.97004 * 119.99417 * 0.02562 * 1 2 3 21 21 H 0.97000 * 119.99774 * 0.02562 * 9 7 2 22 22 H 1.08998 * 109.47233 * 59.99617 * 10 9 7 23 23 H 1.09001 * 109.47040 * 300.00429 * 10 9 7 24 24 H 1.08998 * 109.22471 * 204.89125 * 13 11 10 25 25 H 1.09002 * 109.22195 * 85.54486 * 13 11 10 26 26 H 1.09001 * 108.61617 * 172.06630 * 14 13 11 27 27 H 1.09008 * 108.50490 * 54.22203 * 14 13 11 28 28 H 1.08997 * 109.19759 * 306.63135 * 15 14 13 29 29 H 1.09007 * 109.15587 * 187.33302 * 15 14 13 30 30 H 1.09005 * 109.60458 * 33.29478 * 16 15 14 31 31 H 1.09005 * 109.60456 * 153.61605 * 16 15 14 32 32 H 0.96998 * 119.78880 * 252.05327 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0005 11 6 1.0636 -4.8198 -0.0012 12 1 0.1423 -4.5174 -0.4991 13 6 0.7570 -5.2350 1.4398 14 6 1.9857 -5.0789 2.3173 15 6 3.1126 -6.0342 1.9692 16 6 3.6957 -5.7110 0.5922 17 7 2.9066 -6.4121 -0.4335 18 6 1.6674 -6.0051 -0.7245 19 8 1.0251 -6.5867 -1.5730 20 1 -0.4849 0.8401 -0.0004 21 1 0.3554 -2.3881 -0.0005 22 1 2.6845 -3.7147 0.8894 23 1 2.6846 -3.7146 -0.8905 24 1 0.4368 -6.2769 1.4527 25 1 -0.0451 -4.6090 1.8308 26 1 1.6958 -5.2460 3.3547 27 1 2.3530 -4.0573 2.2198 28 1 2.7293 -7.0546 1.9657 29 1 3.8983 -5.9493 2.7201 30 1 3.6487 -4.6359 0.4184 31 1 4.7327 -6.0438 0.5469 32 1 3.2873 -7.1746 -0.8967 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885392769.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:50 Heat of formation + Delta-G solvation = -12.953050 kcal Electronic energy + Delta-G solvation = -14719.023029 eV Core-core repulsion = 12294.315322 eV Total energy + Delta-G solvation = -2424.707707 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.40816 -36.98717 -34.73450 -33.35052 -31.61210 -30.04059 -27.18272 -24.50590 -23.79362 -22.67222 -20.00341 -19.01015 -17.17004 -17.03818 -16.19333 -15.21032 -14.79990 -14.09258 -13.91077 -13.67406 -13.36640 -12.98725 -12.81058 -12.73737 -11.80356 -11.47770 -11.20577 -10.94052 -10.81501 -10.52405 -10.47871 -10.16167 -9.97527 -9.69394 -9.33979 -8.93412 -8.76158 -6.93294 -5.78388 -3.07861 2.95289 3.42578 3.47016 3.48371 3.52593 4.54921 4.73409 4.92356 4.94157 5.03373 5.35054 5.48749 5.53421 5.56247 5.69288 5.84597 5.93860 6.01581 6.08716 6.16139 6.23612 6.37099 6.52203 6.63895 6.76066 7.03806 7.46952 7.65718 8.39453 8.49824 9.50875 10.07288 10.41933 11.44128 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.040620 B = 0.008261 C = 0.007921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.146228 B = 3388.669238 C = 3534.220456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.140 3.860 11 C -0.114 4.114 12 H 0.106 0.894 13 C -0.101 4.101 14 C -0.137 4.137 15 C -0.135 4.135 16 C 0.074 3.926 17 N -0.724 5.724 18 C 0.530 3.470 19 O -0.560 6.560 20 H 0.256 0.744 21 H 0.384 0.616 22 H 0.058 0.942 23 H 0.018 0.982 24 H 0.056 0.944 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.967 -11.433 4.895 14.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.374 5.374 10 C 0.013 3.987 11 C -0.136 4.136 12 H 0.125 0.875 13 C -0.139 4.139 14 C -0.174 4.174 15 C -0.173 4.173 16 C -0.050 4.050 17 N -0.375 5.375 18 C 0.317 3.683 19 O -0.438 6.438 20 H 0.066 0.934 21 H 0.218 0.782 22 H 0.074 0.926 23 H 0.036 0.964 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.130 0.870 31 H 0.098 0.902 32 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 6.660 -11.428 4.560 13.991 hybrid contribution 0.341 0.595 -0.172 0.707 sum 7.001 -10.833 4.388 13.625 Atomic orbital electron populations 1.69655 1.05123 1.25855 1.57250 1.24751 0.95521 0.97720 1.02789 0.86265 0.78530 0.83520 0.77829 1.21268 1.21669 1.21225 1.19146 0.90964 0.84076 1.43322 0.91202 1.42439 1.05838 0.99676 1.89408 1.21440 0.93214 0.85112 0.98898 1.21851 1.01456 0.93463 0.96797 0.87547 1.21183 0.98605 1.01020 0.93100 1.21348 0.95212 1.01691 0.99167 1.21761 0.98680 1.00077 0.96825 1.22527 0.94338 1.01089 0.87029 1.45904 1.15728 1.34429 1.41485 1.20715 0.81047 0.84876 0.81627 1.90698 1.61190 1.58158 1.33785 0.93385 0.78152 0.92576 0.96443 0.92564 0.90353 0.92133 0.89145 0.91904 0.90924 0.87022 0.90240 0.77048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.73 -18.03 5.59 -59.91 -0.33 -18.37 16 10 C 0.14 2.70 3.89 -4.04 -0.02 2.69 16 11 C -0.11 -1.99 2.74 -91.39 -0.25 -2.24 16 12 H 0.11 2.07 7.76 -51.93 -0.40 1.66 16 13 C -0.10 -1.49 5.48 -27.31 -0.15 -1.64 16 14 C -0.14 -1.75 5.19 -27.96 -0.15 -1.90 16 15 C -0.13 -1.42 5.74 -27.36 -0.16 -1.58 16 16 C 0.07 0.82 6.36 -3.67 -0.02 0.80 16 17 N -0.72 -9.54 5.30 -59.84 -0.32 -9.85 16 18 C 0.53 9.14 6.43 -11.14 -0.07 9.07 16 19 O -0.56 -11.69 17.92 5.56 0.10 -11.59 16 20 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 21 H 0.38 10.14 7.44 -40.82 -0.30 9.83 16 22 H 0.06 0.99 2.86 -51.93 -0.15 0.84 16 23 H 0.02 0.36 7.44 -51.93 -0.39 -0.02 16 24 H 0.06 0.78 7.86 -51.93 -0.41 0.37 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.09 1.33 5.51 -51.92 -0.29 1.05 16 28 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 29 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.11 1.46 3.61 -51.93 -0.19 1.28 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.39 4.49 8.92 -40.82 -0.36 4.12 16 LS Contribution 252.22 15.07 3.80 3.80 Total: -1.00 -32.11 252.22 -6.25 -38.36 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -4.14 Total: 9.80 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.06 Total: -2.03 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.07 Total: -55.39 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.10 Total: -11.59 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.11 -6.25 -38.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885392769.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.409 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds