Wall clock time and date at job start Mon Mar 30 2020 02:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86791 * 120.00149 * 2 1 4 4 H 1.48505 * 109.47255 * 239.99922 * 3 2 1 5 5 H 1.48495 * 109.47206 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47145 * 120.00329 * 3 2 1 7 7 C 1.38812 * 119.99640 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00256 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00154 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00145 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47253 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.79251 * 29.02567 * 11 10 9 13 13 C 1.53061 * 109.63094 * 268.52508 * 11 10 9 14 14 C 1.51791 * 110.74888 * 325.22103 * 13 11 10 15 15 C 1.51779 * 113.80872 * 293.18640 * 14 13 11 16 16 C 1.52988 * 110.88015 * 66.99661 * 15 14 13 17 17 N 1.47184 * 108.80407 * 273.45552 * 16 15 14 18 18 C 1.33632 * 120.25116 * 71.79585 * 17 16 15 19 19 O 1.21282 * 119.83084 * 179.84703 * 18 17 16 20 20 H 0.97004 * 119.99417 * 0.02562 * 1 2 3 21 21 H 0.97000 * 119.99774 * 0.02562 * 9 7 2 22 22 H 1.08998 * 109.47233 * 59.99617 * 10 9 7 23 23 H 1.09001 * 109.47040 * 300.00429 * 10 9 7 24 24 H 1.08998 * 109.22471 * 204.89125 * 13 11 10 25 25 H 1.09002 * 109.22195 * 85.54486 * 13 11 10 26 26 H 1.09001 * 108.61617 * 172.06630 * 14 13 11 27 27 H 1.09008 * 108.50490 * 54.22203 * 14 13 11 28 28 H 1.08997 * 109.19759 * 306.63135 * 15 14 13 29 29 H 1.09007 * 109.15587 * 187.33302 * 15 14 13 30 30 H 1.09005 * 109.60458 * 33.29478 * 16 15 14 31 31 H 1.09005 * 109.60456 * 153.61605 * 16 15 14 32 32 H 0.96998 * 119.78880 * 252.05327 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0005 11 6 1.0636 -4.8198 -0.0012 12 1 0.1423 -4.5174 -0.4991 13 6 0.7570 -5.2350 1.4398 14 6 1.9857 -5.0789 2.3173 15 6 3.1126 -6.0342 1.9692 16 6 3.6957 -5.7110 0.5922 17 7 2.9066 -6.4121 -0.4335 18 6 1.6674 -6.0051 -0.7245 19 8 1.0251 -6.5867 -1.5730 20 1 -0.4849 0.8401 -0.0004 21 1 0.3554 -2.3881 -0.0005 22 1 2.6845 -3.7147 0.8894 23 1 2.6846 -3.7146 -0.8905 24 1 0.4368 -6.2769 1.4527 25 1 -0.0451 -4.6090 1.8308 26 1 1.6958 -5.2460 3.3547 27 1 2.3530 -4.0573 2.2198 28 1 2.7293 -7.0546 1.9657 29 1 3.8983 -5.9493 2.7201 30 1 3.6487 -4.6359 0.4184 31 1 4.7327 -6.0438 0.5469 32 1 3.2873 -7.1746 -0.8967 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885392769.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:50 Heat of formation + Delta-G solvation = -37.271352 kcal Electronic energy + Delta-G solvation = -14720.077550 eV Core-core repulsion = 12294.315322 eV Total energy + Delta-G solvation = -2425.762227 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.70184 -38.36758 -36.34690 -34.79856 -33.19409 -31.63394 -28.59800 -26.16372 -24.98623 -24.31284 -21.24033 -20.32029 -19.08220 -18.26707 -17.54127 -16.64504 -16.53056 -15.57967 -15.37084 -15.00355 -14.64097 -14.57983 -14.38305 -13.93196 -13.11780 -13.01165 -12.70692 -12.64768 -12.40519 -12.13395 -11.88573 -11.67718 -11.49461 -11.18862 -10.91979 -10.64931 -10.00887 -8.95136 -7.92650 -5.22270 1.49581 1.53005 1.57727 1.59289 2.37240 2.58436 3.39589 3.44751 3.74704 3.85476 4.02477 4.19628 4.27023 4.29948 4.46560 4.64410 4.74878 4.76479 4.93962 5.06459 5.13082 5.15749 5.23166 5.32224 5.51684 5.60240 5.95064 6.23179 6.27942 7.22911 7.34529 8.08077 8.31579 9.30840 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.040620 B = 0.008261 C = 0.007921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.146228 B = 3388.669238 C = 3534.220456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.975 3.025 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.272 1.272 7 C -0.245 4.245 8 H 0.082 0.918 9 N -0.744 5.744 10 C 0.144 3.856 11 C -0.111 4.111 12 H 0.076 0.924 13 C -0.098 4.098 14 C -0.134 4.134 15 C -0.129 4.129 16 C 0.070 3.930 17 N -0.705 5.705 18 C 0.530 3.470 19 O -0.604 6.604 20 H 0.251 0.749 21 H 0.371 0.629 22 H 0.088 0.912 23 H 0.010 0.990 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.399 -12.292 6.101 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.198 1.198 7 C -0.376 4.376 8 H 0.100 0.900 9 N -0.387 5.387 10 C 0.019 3.981 11 C -0.133 4.133 12 H 0.094 0.906 13 C -0.136 4.136 14 C -0.171 4.171 15 C -0.168 4.168 16 C -0.053 4.053 17 N -0.356 5.356 18 C 0.316 3.684 19 O -0.486 6.486 20 H 0.059 0.941 21 H 0.203 0.797 22 H 0.104 0.896 23 H 0.027 0.973 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 9.177 -12.325 5.790 16.421 hybrid contribution -0.367 0.776 -0.540 1.014 sum 8.810 -11.549 5.250 15.445 Atomic orbital electron populations 1.69830 1.06766 1.26127 1.59387 1.25605 0.96357 1.01251 1.03667 0.85195 0.77151 0.78999 0.78312 1.20618 1.22530 1.19758 1.19612 0.91689 0.84990 1.41313 0.89979 1.42677 1.05503 1.01078 1.89416 1.21670 0.93307 0.83526 0.99606 1.21717 0.99784 0.93229 0.98546 0.90552 1.21179 0.99642 1.01211 0.91527 1.21329 0.94952 1.01135 0.99712 1.21752 0.98509 0.99537 0.96953 1.22710 0.96198 0.99712 0.86658 1.45831 1.14230 1.34269 1.41264 1.20597 0.82135 0.84534 0.81103 1.90678 1.62725 1.59538 1.35675 0.94077 0.79709 0.89551 0.97257 0.91526 0.91545 0.90302 0.91178 0.91180 0.87858 0.89096 0.86116 0.75564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.49 13.06 21.65 0.28 -59.21 16 2 C -0.08 -4.35 5.50 84.86 0.47 -3.89 16 3 Si 0.97 45.38 29.55 68.60 2.03 47.40 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.24 -13.31 9.99 84.03 0.84 -12.47 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.74 -37.35 5.59 -343.46 -1.92 -39.27 16 10 C 0.14 5.52 3.89 86.38 0.34 5.86 16 11 C -0.11 -3.90 2.74 -11.29 -0.03 -3.93 16 12 H 0.08 3.14 7.76 -2.39 -0.02 3.12 16 13 C -0.10 -2.80 5.48 30.22 0.17 -2.64 16 14 C -0.13 -3.09 5.19 29.80 0.15 -2.94 16 15 C -0.13 -2.18 5.74 30.19 0.17 -2.01 16 16 C 0.07 1.29 6.36 86.24 0.55 1.84 16 17 N -0.71 -16.88 5.30 -462.26 -2.45 -19.33 16 18 C 0.53 17.96 6.43 88.07 0.57 18.53 16 19 O -0.60 -25.44 17.92 -3.03 -0.05 -25.50 16 20 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 21 H 0.37 20.31 7.44 -92.71 -0.69 19.62 16 22 H 0.09 2.89 2.86 -2.39 -0.01 2.89 16 23 H 0.01 0.39 7.44 -2.39 -0.02 0.37 16 24 H 0.07 1.77 7.86 -2.39 -0.02 1.75 16 25 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.07 1.92 5.51 -2.38 -0.01 1.90 16 28 H 0.07 1.16 8.05 -2.39 -0.02 1.14 16 29 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.09 2.12 3.61 -2.38 -0.01 2.11 16 31 H 0.12 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.41 8.12 8.92 -92.71 -0.83 7.29 16 Total: -1.00 -70.28 252.22 0.74 -69.54 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.37 Total: 28.01 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 3.22 Total: -1.65 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -4.08 Total: -117.80 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.05 Total: -25.50 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -70.28 0.74 -69.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885392769.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.268 kcal (2) G-P(sol) polarization free energy of solvation -70.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds