Wall clock time and date at job start Mon Mar 30 2020 02:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46004 * 118.53545 * 2 1 4 4 C 1.52991 * 110.03988 * 161.82266 * 3 2 1 5 5 C 1.52998 * 109.59088 * 170.06229 * 4 3 2 6 6 C 1.53001 * 109.58817 * 290.51188 * 4 3 2 7 7 N 1.47183 * 108.73124 * 50.28770 * 4 3 2 8 8 C 1.46901 * 110.17683 * 291.00284 * 7 4 3 9 9 H 1.09007 * 109.30185 * 290.19766 * 8 7 4 10 10 C 1.50698 * 109.39038 * 170.45709 * 8 7 4 11 11 H 1.08005 * 119.99840 * 266.21698 * 10 8 7 12 12 C 1.37870 * 120.00012 * 86.20903 * 10 8 7 13 13 N 1.31514 * 120.00296 * 353.71040 * 12 10 8 14 14 Si 1.86803 * 119.99806 * 173.42749 * 12 10 8 15 15 H 1.48494 * 109.47274 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46743 * 120.00714 * 14 12 10 17 17 H 1.48496 * 109.47624 * 240.00300 * 14 12 10 18 18 C 1.33715 * 118.53210 * 179.97438 * 2 1 3 19 19 O 1.21280 * 118.62673 * 1.72997 * 18 2 1 20 20 H 1.08997 * 109.47383 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46689 * 300.02301 * 1 2 3 22 22 H 1.08998 * 109.47328 * 60.02157 * 1 2 3 23 23 H 1.09008 * 109.37474 * 281.99090 * 3 2 1 24 24 H 1.08990 * 109.37874 * 41.76114 * 3 2 1 25 25 H 1.09004 * 109.47317 * 59.99737 * 5 4 3 26 26 H 1.09001 * 109.46798 * 179.97438 * 5 4 3 27 27 H 1.08995 * 109.47432 * 299.99168 * 5 4 3 28 28 H 1.08998 * 109.47090 * 60.00668 * 6 4 3 29 29 H 1.08997 * 109.46839 * 180.02562 * 6 4 3 30 30 H 1.08996 * 109.47320 * 300.00153 * 6 4 3 31 31 H 1.00904 * 110.99947 * 167.63934 * 7 4 3 32 32 H 0.97003 * 119.99780 * 354.31614 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1625 1.2827 0.0000 4 6 3.6126 1.0909 0.4484 5 6 4.3981 2.3822 0.2106 6 6 3.6466 0.7324 1.9354 7 7 4.2095 -0.0017 -0.3366 8 6 3.6018 -1.2855 0.0381 9 1 3.9195 -1.5541 1.0456 10 6 4.0490 -2.3518 -0.9284 11 1 3.4426 -2.5880 -1.7903 12 6 5.2323 -3.0255 -0.7123 13 7 6.0309 -2.6554 0.2649 14 14 5.6975 -4.4692 -1.8027 15 1 4.6350 -4.6860 -2.8171 16 1 6.9829 -4.1784 -2.4871 17 1 5.8450 -5.6905 -0.9709 18 6 2.1037 -1.1747 0.0005 19 8 1.4464 -2.1935 -0.0312 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5142 0.8898 22 1 -0.3634 0.5135 -0.8901 23 1 2.1475 1.7024 -1.0059 24 1 1.6615 1.9667 0.6848 25 1 3.9463 3.1928 0.7823 26 1 5.4307 2.2435 0.5311 27 1 4.3770 2.6302 -0.8505 28 1 3.0917 -0.1913 2.0992 29 1 4.6804 0.5967 2.2528 30 1 3.1920 1.5368 2.5136 31 1 5.2111 -0.0273 -0.2173 32 1 5.8291 -1.8592 0.7809 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218982728.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:57 Heat of formation + Delta-G solvation = -31.485318 kcal Electronic energy + Delta-G solvation = -15162.988314 eV Core-core repulsion = 12737.476988 eV Total energy + Delta-G solvation = -2425.511326 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.93739 -36.89417 -34.65668 -33.03467 -30.49412 -27.53251 -27.06101 -26.04829 -25.25544 -22.51320 -20.35107 -17.41546 -17.08625 -16.14137 -15.78883 -14.96827 -14.66000 -14.04303 -13.73697 -13.39252 -13.06526 -12.49462 -12.38407 -12.01466 -11.91248 -11.72321 -11.52774 -11.26629 -10.90804 -10.73489 -10.71064 -10.45625 -10.09952 -9.07528 -8.64627 -8.49383 -8.09416 -7.46090 -6.48594 -4.19109 3.44977 3.48050 3.59932 3.66483 3.70138 4.49627 4.78141 5.02508 5.20807 5.32028 5.51781 5.54126 5.63740 5.74643 5.80967 5.85965 5.98621 6.04410 6.17458 6.22060 6.32761 6.36949 6.51544 6.76077 6.96981 7.51800 8.07755 8.21015 8.29744 8.42032 8.73631 9.11509 9.49206 10.88882 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.032730 B = 0.012325 C = 0.009894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.272033 B = 2271.276611 C = 2829.233854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.621 5.621 3 C 0.141 3.859 4 C 0.077 3.923 5 C -0.133 4.133 6 C -0.176 4.176 7 N -0.667 5.667 8 C 0.187 3.813 9 H 0.039 0.961 10 C -0.553 4.553 11 H 0.059 0.941 12 C 0.024 3.976 13 N -0.907 5.907 14 Si 1.081 2.919 15 H -0.287 1.287 16 H -0.287 1.287 17 H -0.285 1.285 18 C 0.531 3.469 19 O -0.550 6.550 20 H 0.085 0.915 21 H 0.048 0.952 22 H 0.049 0.951 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.343 0.657 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.672 10.037 1.327 11.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.356 5.356 3 C 0.017 3.983 4 C -0.015 4.015 5 C -0.191 4.191 6 C -0.235 4.235 7 N -0.302 5.302 8 C 0.078 3.922 9 H 0.056 0.944 10 C -0.593 4.593 11 H 0.077 0.923 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.908 3.092 15 H -0.213 1.213 16 H -0.213 1.213 17 H -0.211 1.211 18 C 0.321 3.679 19 O -0.426 6.426 20 H 0.104 0.896 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.162 0.838 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.304 8.378 0.545 9.435 hybrid contribution -0.809 1.316 1.167 1.936 sum -5.113 9.694 1.712 11.093 Atomic orbital electron populations 1.21578 0.81427 1.03902 0.99959 1.47524 1.06176 1.06663 1.75272 1.21334 0.91573 0.84765 1.00602 1.21349 0.94076 0.94489 0.91606 1.21749 0.99756 0.95412 1.02207 1.22511 1.02074 1.01682 0.97276 1.61930 1.09586 1.03201 1.55513 1.19379 0.85946 0.88754 0.98150 0.94353 1.21633 1.08497 1.18211 1.10946 0.92295 1.25984 0.92683 1.01449 0.97878 1.70838 1.38257 1.25758 1.19532 0.83372 0.75505 0.75077 0.75199 1.21267 1.21349 1.21124 1.21046 0.91779 0.81743 0.73297 1.90546 1.67075 1.34935 1.50075 0.89584 0.93343 0.93191 0.91996 0.91970 0.92646 0.92338 0.91710 0.92504 0.92380 0.92909 0.83751 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.21 10.55 59.85 0.63 1.84 16 2 N -0.62 -12.24 3.11 -182.47 -0.57 -12.81 16 3 C 0.14 2.30 5.32 -4.31 -0.02 2.28 16 4 C 0.08 1.31 0.98 -131.45 -0.13 1.18 16 5 C -0.13 -1.80 8.66 37.16 0.32 -1.48 16 6 C -0.18 -2.96 7.89 37.16 0.29 -2.66 16 7 N -0.67 -14.56 6.08 -95.50 -0.58 -15.14 16 8 C 0.19 4.78 1.60 -70.23 -0.11 4.67 16 9 H 0.04 1.07 5.68 -51.92 -0.29 0.77 16 10 C -0.55 -16.00 8.19 -34.44 -0.28 -16.28 16 11 H 0.06 1.80 7.82 -52.48 -0.41 1.39 16 12 C 0.02 0.69 5.45 -17.82 -0.10 0.59 16 13 N -0.91 -26.34 13.56 55.43 0.75 -25.59 16 14 Si 1.08 25.70 29.91 -169.99 -5.08 20.61 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.53 13.15 6.27 -11.67 -0.07 13.07 16 19 O -0.55 -15.30 15.51 5.56 0.09 -15.21 16 20 H 0.09 1.56 6.67 -51.93 -0.35 1.21 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.98 8.11 -51.92 -0.42 0.56 16 24 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.06 1.11 5.72 -51.93 -0.30 0.81 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.34 7.68 7.99 -39.29 -0.31 7.37 16 32 H 0.26 7.45 6.25 -40.82 -0.25 7.19 16 LS Contribution 257.74 15.07 3.88 3.88 Total: -1.00 -32.17 257.74 -5.50 -37.67 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -4.51 Total: 3.37 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: 0.53 Total: 3.22 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.40 Total: -53.54 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.09 Total: -15.21 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.61 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.17 -5.50 -37.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218982728.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.183 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds