Wall clock time and date at job start Mon Mar 30 2020 02:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46004 * 118.53545 * 2 1 4 4 C 1.52991 * 110.03988 * 161.82266 * 3 2 1 5 5 C 1.52998 * 109.59088 * 170.06229 * 4 3 2 6 6 C 1.53001 * 109.58817 * 290.51188 * 4 3 2 7 7 N 1.47183 * 108.73124 * 50.28770 * 4 3 2 8 8 C 1.46901 * 110.17683 * 291.00284 * 7 4 3 9 9 H 1.09007 * 109.30185 * 290.19766 * 8 7 4 10 10 C 1.50698 * 109.39038 * 170.45709 * 8 7 4 11 11 H 1.08005 * 119.99840 * 266.21698 * 10 8 7 12 12 C 1.37870 * 120.00012 * 86.20903 * 10 8 7 13 13 N 1.31514 * 120.00296 * 353.71040 * 12 10 8 14 14 Si 1.86803 * 119.99806 * 173.42749 * 12 10 8 15 15 H 1.48494 * 109.47274 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46743 * 120.00714 * 14 12 10 17 17 H 1.48496 * 109.47624 * 240.00300 * 14 12 10 18 18 C 1.33715 * 118.53210 * 179.97438 * 2 1 3 19 19 O 1.21280 * 118.62673 * 1.72997 * 18 2 1 20 20 H 1.08997 * 109.47383 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.46689 * 300.02301 * 1 2 3 22 22 H 1.08998 * 109.47328 * 60.02157 * 1 2 3 23 23 H 1.09008 * 109.37474 * 281.99090 * 3 2 1 24 24 H 1.08990 * 109.37874 * 41.76114 * 3 2 1 25 25 H 1.09004 * 109.47317 * 59.99737 * 5 4 3 26 26 H 1.09001 * 109.46798 * 179.97438 * 5 4 3 27 27 H 1.08995 * 109.47432 * 299.99168 * 5 4 3 28 28 H 1.08998 * 109.47090 * 60.00668 * 6 4 3 29 29 H 1.08997 * 109.46839 * 180.02562 * 6 4 3 30 30 H 1.08996 * 109.47320 * 300.00153 * 6 4 3 31 31 H 1.00904 * 110.99947 * 167.63934 * 7 4 3 32 32 H 0.97003 * 119.99780 * 354.31614 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1625 1.2827 0.0000 4 6 3.6126 1.0909 0.4484 5 6 4.3981 2.3822 0.2106 6 6 3.6466 0.7324 1.9354 7 7 4.2095 -0.0017 -0.3366 8 6 3.6018 -1.2855 0.0381 9 1 3.9195 -1.5541 1.0456 10 6 4.0490 -2.3518 -0.9284 11 1 3.4426 -2.5880 -1.7903 12 6 5.2323 -3.0255 -0.7123 13 7 6.0309 -2.6554 0.2649 14 14 5.6975 -4.4692 -1.8027 15 1 4.6350 -4.6860 -2.8171 16 1 6.9829 -4.1784 -2.4871 17 1 5.8450 -5.6905 -0.9709 18 6 2.1037 -1.1747 0.0005 19 8 1.4464 -2.1935 -0.0312 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5142 0.8898 22 1 -0.3634 0.5135 -0.8901 23 1 2.1475 1.7024 -1.0059 24 1 1.6615 1.9667 0.6848 25 1 3.9463 3.1928 0.7823 26 1 5.4307 2.2435 0.5311 27 1 4.3770 2.6302 -0.8505 28 1 3.0917 -0.1913 2.0992 29 1 4.6804 0.5967 2.2528 30 1 3.1920 1.5368 2.5136 31 1 5.2111 -0.0273 -0.2173 32 1 5.8291 -1.8592 0.7809 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218982728.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:57 Heat of formation + Delta-G solvation = -56.258038 kcal Electronic energy + Delta-G solvation = -15164.062540 eV Core-core repulsion = 12737.476988 eV Total energy + Delta-G solvation = -2426.585552 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.63480 -38.59286 -36.44614 -34.88488 -32.29333 -28.97430 -28.38454 -27.77519 -26.88610 -24.44366 -21.90849 -19.35749 -18.77095 -17.87980 -17.48442 -16.64745 -16.24424 -15.69011 -15.55702 -15.00757 -14.48450 -14.19532 -13.96841 -13.68652 -13.25152 -13.13262 -12.82691 -12.81388 -12.75503 -12.45412 -12.16542 -11.98404 -11.87747 -11.10507 -10.68894 -10.51408 -9.65978 -9.23577 -8.73659 -6.44364 1.50557 1.58920 1.70394 1.79695 2.14723 2.52613 2.97624 3.45224 3.68644 3.81443 4.10820 4.13026 4.42524 4.47963 4.49470 4.54525 4.70205 4.77084 4.81700 4.87912 4.93973 4.99771 5.17147 5.33607 5.45298 5.68728 6.04559 6.19051 6.42167 6.56248 6.59118 7.22153 7.34927 8.65873 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.032730 B = 0.012325 C = 0.009894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.272033 B = 2271.276611 C = 2829.233854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.614 5.614 3 C 0.133 3.867 4 C 0.069 3.931 5 C -0.124 4.124 6 C -0.170 4.170 7 N -0.671 5.671 8 C 0.192 3.808 9 H 0.010 0.990 10 C -0.578 4.578 11 H 0.031 0.969 12 C -0.016 4.016 13 N -0.923 5.923 14 Si 1.121 2.879 15 H -0.285 1.285 16 H -0.268 1.268 17 H -0.277 1.277 18 C 0.522 3.478 19 O -0.597 6.597 20 H 0.059 0.941 21 H 0.086 0.914 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.110 0.890 25 H 0.092 0.908 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.021 0.979 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.335 0.665 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 12.481 1.358 13.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.347 5.347 3 C 0.010 3.990 4 C -0.022 4.022 5 C -0.182 4.182 6 C -0.229 4.229 7 N -0.304 5.304 8 C 0.082 3.918 9 H 0.027 0.973 10 C -0.617 4.617 11 H 0.049 0.951 12 C -0.216 4.216 13 N -0.560 5.560 14 Si 0.943 3.057 15 H -0.210 1.210 16 H -0.193 1.193 17 H -0.203 1.203 18 C 0.311 3.689 19 O -0.478 6.478 20 H 0.077 0.923 21 H 0.104 0.896 22 H 0.096 0.904 23 H 0.092 0.908 24 H 0.128 0.872 25 H 0.111 0.889 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.154 0.846 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.817 10.907 0.585 11.937 hybrid contribution -0.733 0.687 1.203 1.567 sum -5.550 11.593 1.787 12.977 Atomic orbital electron populations 1.21824 0.78935 1.03243 1.03134 1.47549 1.07931 1.06312 1.72921 1.21722 0.90958 0.83608 1.02674 1.21661 0.95115 0.94349 0.91082 1.21707 0.99323 0.94100 1.03085 1.22442 1.01479 1.01296 0.97666 1.61659 1.09060 1.02848 1.56864 1.19072 0.87181 0.89912 0.95645 0.97263 1.21788 1.08518 1.20472 1.10909 0.95077 1.27216 0.92553 1.03348 0.98444 1.70910 1.38755 1.25996 1.20320 0.82870 0.76056 0.72709 0.74087 1.21017 1.19348 1.20291 1.20844 0.91413 0.82904 0.73698 1.90506 1.67705 1.36906 1.52667 0.92256 0.89580 0.90360 0.90773 0.87222 0.88891 0.92580 0.91467 0.96027 0.93117 0.89053 0.84589 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.11 10.55 127.77 1.35 3.46 16 2 N -0.61 -23.17 3.11 -850.21 -2.65 -25.82 16 3 C 0.13 3.81 5.32 86.47 0.46 4.27 16 4 C 0.07 2.20 0.98 3.47 0.00 2.21 16 5 C -0.12 -2.89 8.66 71.98 0.62 -2.26 16 6 C -0.17 -5.40 7.89 71.98 0.57 -4.83 16 7 N -0.67 -29.33 6.08 -456.07 -2.77 -32.10 16 8 C 0.19 10.18 1.60 43.28 0.07 10.25 16 9 H 0.01 0.58 5.68 -2.38 -0.01 0.57 16 10 C -0.58 -34.75 8.19 25.60 0.21 -34.54 16 11 H 0.03 1.98 7.82 -2.91 -0.02 1.96 16 12 C -0.02 -0.93 5.45 84.65 0.46 -0.47 16 13 N -0.92 -54.89 13.56 21.44 0.29 -54.59 16 14 Si 1.12 52.55 29.91 68.60 2.05 54.61 16 15 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 16 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 C 0.52 26.35 6.27 87.68 0.55 26.90 16 19 O -0.60 -34.55 15.51 -3.03 -0.05 -34.60 16 20 H 0.06 2.12 6.67 -2.39 -0.02 2.10 16 21 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.07 2.03 8.11 -2.38 -0.02 2.01 16 24 H 0.11 2.22 8.10 -2.39 -0.02 2.20 16 25 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.02 0.82 5.72 -2.39 -0.01 0.80 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.34 15.30 7.99 -89.69 -0.72 14.59 16 32 H 0.26 15.14 6.25 -92.71 -0.58 14.56 16 Total: -1.00 -73.77 257.74 1.75 -72.02 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.58 Total: 15.52 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 4.29 Total: 4.98 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -5.13 Total: -112.51 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.05 Total: -34.60 kcal Atomic # 14 Polarization: 52.55 SS G_CDS: 2.05 Total: 54.61 kcal Total: -73.77 1.75 -72.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218982728.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.758 kcal (2) G-P(sol) polarization free energy of solvation -73.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds