Wall clock time and date at job start Mon Mar 30 2020 02:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52486 * 1 3 3 H 1.11079 * 107.05252 * 2 1 4 4 C 1.52197 * 112.08366 * 117.50687 * 2 1 3 5 5 C 1.50837 * 114.22845 * 51.41299 * 4 2 1 6 6 N 1.44675 * 116.52874 * 65.55469 * 5 4 2 7 7 C 1.46119 * 113.41481 * 63.08264 * 6 5 4 8 8 C 1.45991 * 114.78099 * 291.05083 * 6 5 4 9 9 H 1.09082 * 110.19327 * 317.48731 * 8 6 5 10 10 C 1.51297 * 109.21713 * 198.72151 * 8 6 5 11 11 H 1.08002 * 120.00270 * 359.83531 * 10 8 6 12 12 C 1.37884 * 119.99971 * 179.54913 * 10 8 6 13 13 N 1.31514 * 119.99698 * 0.28585 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27652 * 12 10 8 15 15 H 1.48496 * 109.47341 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46983 * 120.00379 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00192 * 14 12 10 18 18 C 1.50951 * 109.96370 * 79.13958 * 8 6 5 19 19 O 1.22454 * 118.12252 * 117.41673 * 18 8 6 20 20 N 1.32609 * 123.95700 * 297.30100 * 18 8 6 21 21 H 1.09001 * 109.46864 * 177.26422 * 1 2 3 22 22 H 1.08999 * 109.46713 * 297.26437 * 1 2 3 23 23 H 1.08994 * 109.47034 * 57.26533 * 1 2 3 24 24 H 1.09419 * 109.11667 * 174.63981 * 4 2 1 25 25 H 1.10060 * 108.43144 * 290.42740 * 4 2 1 26 26 H 1.10279 * 107.35078 * 186.01242 * 5 4 2 27 27 H 1.09095 * 109.91051 * 300.61545 * 5 4 2 28 28 H 1.09001 * 109.46856 * 287.12184 * 7 6 5 29 29 H 1.08996 * 109.47235 * 47.12202 * 7 6 5 30 30 H 1.08999 * 109.47070 * 167.12838 * 7 6 5 31 31 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 32 32 H 0.98772 * 117.11380 * 180.21026 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5249 0.0000 0.0000 3 1 1.8506 1.0620 0.0000 4 6 2.0971 -0.6514 1.2509 5 6 1.5348 -2.0189 1.5491 6 7 1.8368 -3.0638 0.5952 7 6 3.2638 -3.3603 0.4910 8 6 1.1885 -2.9123 -0.7041 9 1 0.1511 -2.6013 -0.5733 10 6 1.1966 -4.2435 -1.4230 11 1 1.6434 -5.1078 -0.9541 12 6 0.6282 -4.3547 -2.6743 13 7 0.0841 -3.3023 -3.2452 14 14 0.6313 -6.0001 -3.5585 15 1 1.2993 -7.0179 -2.7082 16 1 -0.7675 -6.4206 -3.8267 17 1 1.3641 -5.8702 -4.8437 18 6 1.9349 -1.8988 -1.5374 19 8 2.4470 -2.2766 -2.5836 20 7 2.0685 -0.6217 -1.2064 21 1 -0.3633 -1.0265 -0.0491 22 1 -0.3633 0.4708 0.9135 23 1 -0.3633 0.5557 -0.8644 24 1 3.1856 -0.7116 1.1576 25 1 1.8902 0.0043 2.1103 26 1 1.9395 -2.3352 2.5250 27 1 0.4539 -1.9552 1.6826 28 1 3.7658 -2.5491 -0.0365 29 1 3.6878 -3.4613 1.4900 30 1 3.4022 -4.2914 -0.0584 31 1 -0.3154 -3.3805 -4.1257 32 1 2.5756 -0.0461 -1.8285 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218984283.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:58 Heat of formation + Delta-G solvation = -25.703834 kcal Electronic energy + Delta-G solvation = -15449.705650 eV Core-core repulsion = 13024.445028 eV Total energy + Delta-G solvation = -2425.260622 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.36252 -36.00737 -34.95023 -32.26315 -30.80410 -28.57472 -27.28134 -25.54364 -23.29777 -22.76275 -19.18863 -18.44525 -16.51209 -15.97596 -15.65364 -14.81102 -14.32417 -14.15322 -13.55035 -13.24752 -12.95970 -12.46651 -11.93437 -11.72199 -11.62363 -11.45361 -11.20968 -10.83674 -10.65196 -10.51029 -10.37350 -10.22171 -9.74661 -9.09347 -8.48318 -8.29610 -7.99600 -7.07341 -5.91308 -3.91681 3.41327 3.49278 3.52780 4.11440 4.27877 4.56008 5.02549 5.06078 5.19977 5.41841 5.52124 5.79254 5.80878 5.89447 6.05720 6.10123 6.20544 6.27050 6.32046 6.38240 6.65155 6.69253 6.77932 7.16781 7.70776 7.91319 8.10449 8.12481 8.46622 8.74106 9.10587 9.73095 9.83335 11.20590 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.039918 B = 0.012622 C = 0.011368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.267841 B = 2217.886396 C = 2462.422362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.151 3.849 3 H 0.066 0.934 4 C -0.161 4.161 5 C 0.072 3.928 6 N -0.553 5.553 7 C 0.053 3.947 8 C 0.227 3.773 9 H 0.063 0.937 10 C -0.503 4.503 11 H 0.067 0.933 12 C 0.079 3.921 13 N -0.876 5.876 14 Si 0.900 3.100 15 H -0.273 1.273 16 H -0.286 1.286 17 H -0.286 1.286 18 C 0.493 3.507 19 O -0.527 6.527 20 N -0.739 5.739 21 H 0.073 0.927 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.012 0.988 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.258 0.742 32 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 6.572 8.866 11.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.045 3.955 3 H 0.085 0.915 4 C -0.202 4.202 5 C -0.057 4.057 6 N -0.276 5.276 7 C -0.095 4.095 8 C 0.117 3.883 9 H 0.080 0.920 10 C -0.541 4.541 11 H 0.085 0.915 12 C -0.125 4.125 13 N -0.513 5.513 14 Si 0.728 3.272 15 H -0.197 1.197 16 H -0.213 1.213 17 H -0.212 1.212 18 C 0.279 3.721 19 O -0.400 6.400 20 N -0.394 5.394 21 H 0.092 0.908 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.031 0.969 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 1.617 5.867 8.471 10.430 hybrid contribution 0.489 0.419 -1.134 1.304 sum 2.106 6.286 7.336 9.888 Atomic orbital electron populations 1.22144 0.95275 1.03900 1.01276 1.20647 0.93980 0.95570 0.85324 0.91549 1.22158 1.01232 0.99286 0.97514 1.21189 1.00883 0.88124 0.95496 1.58577 1.13067 1.42127 1.13874 1.21870 0.87239 1.01041 0.99304 1.19433 0.93221 0.93690 0.81908 0.91998 1.20835 1.38738 0.93065 1.01499 0.91533 1.24832 0.94427 0.96453 0.96814 1.69907 1.37191 1.28800 1.15392 0.86423 0.77242 0.83811 0.79708 1.19728 1.21279 1.21192 1.22788 0.79730 0.81772 0.87794 1.90870 1.46523 1.78130 1.24429 1.46458 1.58102 1.10940 1.23932 0.90837 0.92193 0.92464 0.92200 0.91421 0.92720 0.91372 0.96941 0.93494 0.90778 0.93214 0.79130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 8.84 36.89 0.33 -2.28 16 2 C 0.15 2.37 3.18 -68.77 -0.22 2.15 16 3 H 0.07 0.86 8.30 -50.73 -0.42 0.43 16 4 C -0.16 -2.35 5.04 -28.23 -0.14 -2.49 16 5 C 0.07 1.21 4.69 -6.10 -0.03 1.18 16 6 N -0.55 -11.72 4.22 -241.17 -1.02 -12.74 16 7 C 0.05 1.07 8.72 59.64 0.52 1.59 16 8 C 0.23 5.74 1.76 -70.09 -0.12 5.61 16 9 H 0.06 1.66 5.87 -51.88 -0.30 1.35 16 10 C -0.50 -14.39 7.58 -34.14 -0.26 -14.65 16 11 H 0.07 1.90 7.17 -52.49 -0.38 1.52 16 12 C 0.08 2.32 4.67 -17.82 -0.08 2.23 16 13 N -0.88 -26.56 11.70 55.43 0.65 -25.91 16 14 Si 0.90 22.76 29.54 -169.99 -5.02 17.73 16 15 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 18 C 0.49 12.51 4.88 -11.82 -0.06 12.45 16 19 O -0.53 -15.81 15.03 4.50 0.07 -15.74 16 20 N -0.74 -14.95 4.95 -54.10 -0.27 -15.22 16 21 H 0.07 1.36 4.70 -51.93 -0.24 1.12 16 22 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.91 7.52 -51.69 -0.39 0.52 16 25 H 0.07 0.77 8.23 -51.32 -0.42 0.35 16 26 H 0.05 0.81 8.14 -51.20 -0.42 0.39 16 27 H 0.07 1.11 7.08 -51.88 -0.37 0.74 16 28 H 0.01 0.26 6.66 -51.93 -0.35 -0.09 16 29 H 0.05 0.78 8.01 -51.93 -0.42 0.36 16 30 H 0.07 1.62 7.00 -51.93 -0.36 1.26 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.37 7.14 8.88 -40.14 -0.36 6.78 16 LS Contribution 248.29 15.07 3.74 3.74 Total: -1.00 -33.19 248.29 -6.32 -39.51 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.40 Total: 2.82 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -0.07 Total: 5.80 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.64 Total: -53.87 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.07 Total: -15.74 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -33.19 -6.32 -39.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218984283.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.808 kcal (2) G-P(sol) polarization free energy of solvation -33.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds