Wall clock time and date at job start Mon Mar 30 2020 02:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52486 * 1 3 3 H 1.11079 * 107.05252 * 2 1 4 4 C 1.52197 * 112.08366 * 117.50687 * 2 1 3 5 5 C 1.50837 * 114.22845 * 51.41299 * 4 2 1 6 6 N 1.44675 * 116.52874 * 65.55469 * 5 4 2 7 7 C 1.46119 * 113.41481 * 63.08264 * 6 5 4 8 8 C 1.45991 * 114.78099 * 291.05083 * 6 5 4 9 9 H 1.09082 * 110.19327 * 317.48731 * 8 6 5 10 10 C 1.51297 * 109.21713 * 198.72151 * 8 6 5 11 11 H 1.08002 * 120.00270 * 359.83531 * 10 8 6 12 12 C 1.37884 * 119.99971 * 179.54913 * 10 8 6 13 13 N 1.31514 * 119.99698 * 0.28585 * 12 10 8 14 14 Si 1.86794 * 119.99837 * 180.27652 * 12 10 8 15 15 H 1.48496 * 109.47341 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46983 * 120.00379 * 14 12 10 17 17 H 1.48503 * 109.47491 * 240.00192 * 14 12 10 18 18 C 1.50951 * 109.96370 * 79.13958 * 8 6 5 19 19 O 1.22454 * 118.12252 * 117.41673 * 18 8 6 20 20 N 1.32609 * 123.95700 * 297.30100 * 18 8 6 21 21 H 1.09001 * 109.46864 * 177.26422 * 1 2 3 22 22 H 1.08999 * 109.46713 * 297.26437 * 1 2 3 23 23 H 1.08994 * 109.47034 * 57.26533 * 1 2 3 24 24 H 1.09419 * 109.11667 * 174.63981 * 4 2 1 25 25 H 1.10060 * 108.43144 * 290.42740 * 4 2 1 26 26 H 1.10279 * 107.35078 * 186.01242 * 5 4 2 27 27 H 1.09095 * 109.91051 * 300.61545 * 5 4 2 28 28 H 1.09001 * 109.46856 * 287.12184 * 7 6 5 29 29 H 1.08996 * 109.47235 * 47.12202 * 7 6 5 30 30 H 1.08999 * 109.47070 * 167.12838 * 7 6 5 31 31 H 0.97005 * 119.99651 * 179.97438 * 13 12 10 32 32 H 0.98772 * 117.11380 * 180.21026 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5249 0.0000 0.0000 3 1 1.8506 1.0620 0.0000 4 6 2.0971 -0.6514 1.2509 5 6 1.5348 -2.0189 1.5491 6 7 1.8368 -3.0638 0.5952 7 6 3.2638 -3.3603 0.4910 8 6 1.1885 -2.9123 -0.7041 9 1 0.1511 -2.6013 -0.5733 10 6 1.1966 -4.2435 -1.4230 11 1 1.6434 -5.1078 -0.9541 12 6 0.6282 -4.3547 -2.6743 13 7 0.0841 -3.3023 -3.2452 14 14 0.6313 -6.0001 -3.5585 15 1 1.2993 -7.0179 -2.7082 16 1 -0.7675 -6.4206 -3.8267 17 1 1.3641 -5.8702 -4.8437 18 6 1.9349 -1.8988 -1.5374 19 8 2.4470 -2.2766 -2.5836 20 7 2.0685 -0.6217 -1.2064 21 1 -0.3633 -1.0265 -0.0491 22 1 -0.3633 0.4708 0.9135 23 1 -0.3633 0.5557 -0.8644 24 1 3.1856 -0.7116 1.1576 25 1 1.8902 0.0043 2.1103 26 1 1.9395 -2.3352 2.5250 27 1 0.4539 -1.9552 1.6826 28 1 3.7658 -2.5491 -0.0365 29 1 3.6878 -3.4613 1.4900 30 1 3.4022 -4.2914 -0.0584 31 1 -0.3154 -3.3805 -4.1257 32 1 2.5756 -0.0461 -1.8285 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218984283.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:57 Heat of formation + Delta-G solvation = -52.321595 kcal Electronic energy + Delta-G solvation = -15450.859883 eV Core-core repulsion = 13024.445028 eV Total energy + Delta-G solvation = -2426.414855 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.04505 -37.78389 -36.55221 -34.37532 -32.43347 -30.17824 -28.93877 -27.17147 -25.14810 -24.34659 -20.75606 -20.16101 -18.30622 -17.81968 -17.27679 -16.68410 -16.04442 -15.85945 -15.09285 -14.74840 -14.59491 -14.33664 -13.68984 -13.24790 -13.13170 -12.89140 -12.82682 -12.65680 -12.51503 -12.28208 -11.88695 -11.80062 -11.43533 -11.05221 -10.47522 -10.40517 -9.73303 -8.77543 -8.10550 -6.16278 1.38236 1.42190 1.52470 2.26199 2.44675 2.70416 3.32024 3.42370 3.83483 3.97442 4.25787 4.36681 4.49108 4.60014 4.68433 4.75709 4.79329 4.96321 5.00559 5.02388 5.10233 5.21978 5.36183 5.49318 5.72641 6.02347 6.15979 6.40656 6.68565 6.88246 7.06479 7.52913 7.93269 8.99917 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.039918 B = 0.012622 C = 0.011368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.267841 B = 2217.886396 C = 2462.422362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.136 3.864 3 H 0.110 0.890 4 C -0.157 4.157 5 C 0.061 3.939 6 N -0.564 5.564 7 C 0.061 3.939 8 C 0.232 3.768 9 H 0.044 0.956 10 C -0.518 4.518 11 H 0.057 0.943 12 C 0.027 3.973 13 N -0.906 5.906 14 Si 0.956 3.044 15 H -0.264 1.264 16 H -0.273 1.273 17 H -0.294 1.294 18 C 0.495 3.505 19 O -0.588 6.588 20 N -0.731 5.731 21 H 0.036 0.964 22 H 0.101 0.899 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.116 0.884 26 H 0.084 0.916 27 H 0.070 0.930 28 H -0.001 1.001 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.255 0.745 32 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 7.744 11.035 13.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.032 3.968 3 H 0.128 0.872 4 C -0.197 4.197 5 C -0.066 4.066 6 N -0.288 5.288 7 C -0.087 4.087 8 C 0.122 3.878 9 H 0.062 0.938 10 C -0.557 4.557 11 H 0.075 0.925 12 C -0.174 4.174 13 N -0.544 5.544 14 Si 0.782 3.218 15 H -0.188 1.188 16 H -0.198 1.198 17 H -0.220 1.220 18 C 0.282 3.718 19 O -0.466 6.466 20 N -0.383 5.383 21 H 0.055 0.945 22 H 0.119 0.881 23 H 0.067 0.933 24 H 0.076 0.924 25 H 0.134 0.866 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.018 0.982 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.847 7.080 10.714 12.974 hybrid contribution 0.415 0.139 -1.682 1.738 sum 2.263 7.219 9.032 11.781 Atomic orbital electron populations 1.22111 0.95125 1.01835 1.03057 1.21146 0.94121 0.97625 0.83903 0.87227 1.22097 1.00678 0.98527 0.98391 1.21389 1.01565 0.88527 0.95161 1.58475 1.13243 1.44792 1.12288 1.21805 0.86867 0.99036 1.01009 1.19111 0.92718 0.92258 0.83727 0.93824 1.21194 1.37991 0.94547 1.01930 0.92486 1.25605 0.94402 0.99605 0.97751 1.70021 1.38391 1.30543 1.15437 0.85543 0.77761 0.80372 0.78091 1.18764 1.19841 1.22032 1.22666 0.79038 0.83359 0.86773 1.90831 1.49289 1.79714 1.26746 1.46366 1.57083 1.09456 1.25444 0.94458 0.88067 0.93314 0.92413 0.86598 0.89805 0.91199 0.98214 0.89443 0.93734 0.93641 0.78406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.67 8.84 71.81 0.63 -4.03 16 2 C 0.14 3.82 3.18 44.61 0.14 3.97 16 3 H 0.11 2.25 8.30 -1.26 -0.01 2.24 16 4 C -0.16 -3.87 5.04 29.63 0.15 -3.72 16 5 C 0.06 1.86 4.69 86.02 0.40 2.26 16 6 N -0.56 -23.41 4.22 -916.94 -3.87 -27.28 16 7 C 0.06 2.38 8.72 127.84 1.12 3.50 16 8 C 0.23 11.94 1.76 43.86 0.08 12.02 16 9 H 0.04 2.42 5.87 -2.34 -0.01 2.40 16 10 C -0.52 -30.48 7.58 25.79 0.20 -30.28 16 11 H 0.06 3.35 7.17 -2.91 -0.02 3.33 16 12 C 0.03 1.64 4.67 84.66 0.40 2.03 16 13 N -0.91 -56.65 11.70 21.45 0.25 -56.40 16 14 Si 0.96 47.79 29.54 68.60 2.03 49.82 16 15 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 17 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 18 C 0.50 25.50 4.88 88.07 0.43 25.93 16 19 O -0.59 -36.46 15.03 -6.82 -0.10 -36.56 16 20 N -0.73 -28.86 4.95 -444.16 -2.20 -31.06 16 21 H 0.04 1.35 4.70 -2.39 -0.01 1.34 16 22 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.06 1.50 7.52 -2.16 -0.02 1.48 16 25 H 0.12 1.87 8.23 -1.82 -0.01 1.85 16 26 H 0.08 2.09 8.14 -1.70 -0.01 2.07 16 27 H 0.07 2.09 7.08 -2.34 -0.02 2.08 16 28 H 0.00 -0.03 6.66 -2.39 -0.02 -0.04 16 29 H 0.09 2.68 8.01 -2.39 -0.02 2.66 16 30 H 0.04 1.98 7.00 -2.39 -0.02 1.96 16 31 H 0.25 15.36 8.31 -92.70 -0.77 14.59 16 32 H 0.38 14.21 8.88 -91.37 -0.81 13.39 16 Total: -1.00 -75.35 248.29 -0.02 -75.37 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.33 Total: 14.45 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 3.54 Total: 11.66 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -5.82 Total: -114.74 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -0.10 Total: -36.56 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -75.35 -0.02 -75.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218984283.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.053 kcal (2) G-P(sol) polarization free energy of solvation -75.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds