Wall clock time and date at job start Mon Mar 30 2020 02:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47206 * 2 1 4 4 C 1.50702 * 109.46941 * 120.00543 * 2 1 3 5 5 O 1.21279 * 119.99748 * 274.70471 * 4 2 1 6 6 N 1.34774 * 119.99709 * 94.71207 * 4 2 1 7 7 C 1.47585 * 134.48576 * 174.91904 * 6 4 2 8 8 C 1.53954 * 86.11467 * 155.35558 * 7 6 4 9 9 N 1.46492 * 113.74455 * 269.15646 * 8 7 6 10 10 C 1.36937 * 120.00332 * 203.07528 * 9 8 7 11 11 H 1.07999 * 119.99513 * 359.97438 * 10 9 8 12 12 C 1.38806 * 120.00455 * 179.97438 * 10 9 8 13 13 N 1.31619 * 120.00406 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99884 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47274 * 90.00020 * 14 12 10 16 16 H 1.48497 * 109.47194 * 210.00045 * 14 12 10 17 17 H 1.48500 * 109.47207 * 329.99939 * 14 12 10 18 18 C 1.47810 * 134.46342 * 354.78278 * 6 4 2 19 19 H 1.08995 * 109.47285 * 64.91721 * 1 2 3 20 20 H 1.08993 * 109.47238 * 184.92474 * 1 2 3 21 21 H 1.09010 * 109.46788 * 304.92159 * 1 2 3 22 22 H 1.09003 * 109.46723 * 240.00303 * 2 1 3 23 23 H 1.08999 * 109.46663 * 180.02562 * 3 2 1 24 24 H 1.08995 * 109.47134 * 300.00408 * 3 2 1 25 25 H 1.09003 * 109.47032 * 60.00492 * 3 2 1 26 26 H 1.08997 * 113.76836 * 41.06134 * 7 6 4 27 27 H 1.08997 * 113.76973 * 269.65608 * 7 6 4 28 28 H 1.08999 * 113.73952 * 137.94756 * 8 7 6 29 29 H 0.97000 * 120.00009 * 23.07152 * 9 8 7 30 30 H 0.97001 * 120.00176 * 179.97438 * 13 12 10 31 31 H 1.08997 * 113.76680 * 90.38090 * 18 6 4 32 32 H 1.09007 * 113.83402 * 318.92443 * 18 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.1532 -0.1043 2.2738 6 7 2.3473 -2.0196 1.1712 7 6 2.9388 -2.9849 2.1180 8 6 2.2195 -4.0710 1.2975 9 7 0.8745 -4.3852 1.7857 10 6 0.3071 -5.5975 1.4967 11 1 0.8510 -6.3218 0.9085 12 6 -0.9671 -5.8955 1.9597 13 7 -1.5128 -7.0605 1.6815 14 14 -1.9076 -4.6429 2.9777 15 1 -2.7075 -3.7738 2.0777 16 1 -2.8142 -5.3495 3.9178 17 1 -0.9487 -3.8098 3.7468 18 6 2.2366 -3.0651 0.1322 19 1 -0.3633 0.4356 -0.9307 20 1 -0.3633 -1.0238 0.0882 21 1 -0.3633 0.5884 0.8427 22 1 1.8933 -0.5138 -0.8901 23 1 3.1301 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8899 25 1 1.6768 1.9563 0.8901 26 1 2.5657 -2.8853 3.1373 27 1 4.0259 -3.0422 2.0652 28 1 2.8253 -4.9594 1.1192 29 1 0.3859 -3.7346 2.3137 30 1 -2.4031 -7.2688 2.0054 31 1 3.1171 -3.1461 -0.5051 32 1 1.3040 -3.0294 -0.4311 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260057260.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:13 Heat of formation + Delta-G solvation = -18.186961 kcal Electronic energy + Delta-G solvation = -14408.906253 eV Core-core repulsion = 11983.971587 eV Total energy + Delta-G solvation = -2424.934666 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.31727 -39.15773 -35.66810 -35.36113 -33.01703 -29.95508 -28.12537 -27.10902 -25.63777 -23.85560 -21.56328 -19.83544 -19.52415 -18.24473 -17.19155 -16.76748 -16.28712 -15.81454 -15.40772 -14.81894 -14.59372 -14.44434 -13.79703 -13.66381 -13.22172 -13.08995 -13.01700 -12.90120 -12.79075 -12.23509 -12.13983 -12.09174 -11.90021 -11.83228 -11.07151 -10.63921 -9.68642 -9.37291 -8.06601 -5.40319 1.32779 1.35534 1.40446 1.60729 1.90835 2.42185 3.22538 3.34502 3.50419 3.84829 3.89855 4.06078 4.20114 4.37909 4.50966 4.53781 4.69110 4.72862 4.76066 4.77675 4.85256 4.90763 5.07487 5.17000 5.20470 5.28480 5.75789 6.18729 6.77227 7.01361 7.14045 7.77218 7.93947 9.13941 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.035133 B = 0.009146 C = 0.008290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.784294 B = 3060.591829 C = 3376.755810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C -0.129 4.129 4 C 0.524 3.476 5 O -0.599 6.599 6 N -0.643 5.643 7 C 0.088 3.912 8 C 0.145 3.855 9 N -0.734 5.734 10 C -0.228 4.228 11 H 0.078 0.922 12 C -0.051 4.051 13 N -0.974 5.974 14 Si 0.938 3.062 15 H -0.280 1.280 16 H -0.294 1.294 17 H -0.270 1.270 18 C 0.079 3.921 19 H 0.096 0.904 20 H 0.043 0.957 21 H 0.048 0.952 22 H 0.110 0.890 23 H 0.056 0.944 24 H 0.091 0.909 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.123 0.877 28 H 0.105 0.895 29 H 0.360 0.640 30 H 0.258 0.742 31 H 0.124 0.876 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.623 13.052 -6.277 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 C -0.186 4.186 4 C 0.315 3.685 5 O -0.481 6.481 6 N -0.377 5.377 7 C -0.036 4.036 8 C 0.035 3.965 9 N -0.374 5.374 10 C -0.358 4.358 11 H 0.096 0.904 12 C -0.243 4.243 13 N -0.624 5.624 14 Si 0.767 3.233 15 H -0.206 1.206 16 H -0.220 1.220 17 H -0.196 1.196 18 C -0.045 4.045 19 H 0.115 0.885 20 H 0.062 0.938 21 H 0.068 0.932 22 H 0.128 0.872 23 H 0.075 0.925 24 H 0.110 0.890 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.140 0.860 28 H 0.123 0.877 29 H 0.193 0.807 30 H 0.068 0.932 31 H 0.141 0.859 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.593 13.324 -5.801 16.883 hybrid contribution -1.004 0.377 0.982 1.454 sum 7.589 13.702 -4.819 16.388 Atomic orbital electron populations 1.21727 0.92543 1.01810 1.03635 1.21284 0.97873 0.98037 0.95314 1.21642 1.01043 0.92972 1.02961 1.21146 0.76439 0.80101 0.90812 1.90622 1.57126 1.66442 1.33936 1.50309 1.61007 1.07488 1.18851 1.23863 1.00064 0.84957 0.94710 1.21948 0.85762 0.95943 0.92866 1.42565 1.15649 1.16010 1.63171 1.19114 0.97961 0.92253 1.26521 0.90436 1.25280 0.98568 0.98169 1.02298 1.69824 1.16953 1.23491 1.52164 0.85672 0.79009 0.79293 0.79283 1.20613 1.22033 1.19564 1.24355 1.03246 0.83372 0.93565 0.88494 0.93781 0.93249 0.87224 0.92528 0.88998 0.93404 0.92579 0.85954 0.87728 0.80746 0.93249 0.85857 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.18 71.98 0.66 -2.72 16 2 C -0.10 -2.53 3.11 -11.54 -0.04 -2.56 16 3 C -0.13 -2.69 8.85 71.98 0.64 -2.05 16 4 C 0.52 17.39 7.05 87.66 0.62 18.01 16 5 O -0.60 -24.71 17.00 -3.03 -0.05 -24.77 16 6 N -0.64 -19.80 3.61 -836.44 -3.02 -22.82 16 7 C 0.09 2.60 8.59 86.49 0.74 3.34 16 8 C 0.15 4.74 4.66 46.75 0.22 4.96 16 9 N -0.73 -32.51 5.22 -327.79 -1.71 -34.22 16 10 C -0.23 -12.15 10.46 84.03 0.88 -11.27 16 11 H 0.08 4.36 8.06 -2.91 -0.02 4.34 16 12 C -0.05 -2.90 5.50 84.86 0.47 -2.43 16 13 N -0.97 -60.35 13.97 21.65 0.30 -60.05 16 14 Si 0.94 45.98 27.73 68.60 1.90 47.88 16 15 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 16 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 17 H -0.27 -12.74 6.52 99.48 0.65 -12.09 16 18 C 0.08 2.09 8.17 86.44 0.71 2.79 16 19 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 20 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 22 H 0.11 2.14 7.78 -2.39 -0.02 2.13 16 23 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.18 7.86 -2.39 -0.02 1.16 16 26 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.10 3.12 8.11 -2.39 -0.02 3.10 16 29 H 0.36 16.67 5.80 -92.71 -0.54 16.13 16 30 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 31 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -70.21 273.01 2.81 -67.40 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.50 Total: 18.52 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 4.89 Total: 8.06 kcal Atomic # 7 Polarization: -112.66 SS G_CDS: -4.43 Total: -117.09 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.05 Total: -24.77 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.90 Total: 47.88 kcal Total: -70.21 2.81 -67.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260057260.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.210 kcal (2) G-P(sol) polarization free energy of solvation -70.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds