Wall clock time and date at job start Mon Mar 30 2020 02:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86808 * 119.99770 * 2 1 4 4 H 1.48506 * 109.46854 * 240.00181 * 3 2 1 5 5 H 1.48497 * 109.47063 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47149 * 119.99991 * 3 2 1 7 7 C 1.38809 * 120.00459 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00529 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99593 * 0.02562 * 7 2 1 10 10 C 1.47066 * 136.05541 * 180.02562 * 9 7 2 11 11 C 1.53504 * 88.04678 * 207.05070 * 10 9 7 12 12 N 1.46896 * 114.20524 * 220.37587 * 11 10 9 13 13 C 1.47018 * 110.99989 * 303.63064 * 12 11 10 14 14 C 1.53097 * 109.26081 * 177.60966 * 13 12 11 15 15 O 1.43014 * 109.25826 * 56.84766 * 14 13 12 16 16 C 1.43014 * 113.73997 * 301.33402 * 15 14 13 17 17 C 1.47013 * 111.00117 * 180.02562 * 12 11 10 18 18 C 1.47064 * 136.05798 * 359.94252 * 9 7 2 19 19 H 0.97000 * 120.00117 * 0.02562 * 1 2 3 20 20 H 1.09002 * 113.46793 * 321.86042 * 10 9 7 21 21 H 1.08999 * 113.46805 * 92.24409 * 10 9 7 22 22 H 1.09002 * 114.20460 * 87.54848 * 11 10 9 23 23 H 1.08995 * 109.51071 * 297.54903 * 13 12 11 24 24 H 1.09007 * 109.50253 * 57.67596 * 13 12 11 25 25 H 1.09005 * 109.50504 * 296.91607 * 14 13 12 26 26 H 1.08995 * 109.54627 * 176.80992 * 14 13 12 27 27 H 1.08998 * 109.50876 * 298.73059 * 16 15 14 28 28 H 1.09004 * 109.54006 * 178.62593 * 16 15 14 29 29 H 1.09007 * 109.50176 * 302.32719 * 17 12 11 30 30 H 1.08998 * 109.50714 * 62.40835 * 17 12 11 31 31 H 1.08999 * 113.47096 * 267.69901 * 18 9 7 32 32 H 1.09005 * 113.46966 * 38.08294 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 1.6801 -3.8153 0.0015 11 6 0.3420 -4.0941 -0.6972 12 7 -0.3510 -5.2958 -0.2137 13 6 0.5072 -6.4834 -0.3347 14 6 -0.2297 -7.6990 0.2338 15 8 -1.4748 -7.8587 -0.4514 16 6 -2.3358 -6.7209 -0.3538 17 6 -1.6199 -5.4958 -0.9286 18 6 -0.0876 -2.7948 0.0011 19 1 -0.4850 0.8400 -0.0004 20 1 2.5484 -4.0474 -0.6153 21 1 1.7459 -4.2456 1.0008 22 1 0.3825 -4.0253 -1.7842 23 1 0.7412 -6.6580 -1.3849 24 1 1.4302 -6.3237 0.2228 25 1 -0.4161 -7.5471 1.2969 26 1 0.3793 -8.5923 0.0951 27 1 -2.5835 -6.5406 0.6922 28 1 -3.2500 -6.9061 -0.9176 29 1 -2.2500 -4.6149 -0.8048 30 1 -1.4196 -5.6539 -1.9883 31 1 -0.4932 -2.9538 1.0003 32 1 -0.7228 -2.1584 -0.6151 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261120393.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:48 Heat of formation + Delta-G solvation = 0.951405 kcal Electronic energy + Delta-G solvation = -14497.131852 eV Core-core repulsion = 12073.027088 eV Total energy + Delta-G solvation = -2424.104764 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.88102 -39.27924 -35.84833 -34.00423 -32.11003 -29.89330 -27.58676 -26.61892 -24.57796 -24.40241 -21.53228 -20.79343 -18.84110 -17.67325 -17.02997 -16.90762 -16.13741 -15.87633 -15.81041 -15.63655 -15.16222 -14.44296 -13.55161 -13.46292 -13.28849 -13.07603 -12.78672 -12.67064 -12.42073 -12.27892 -12.09668 -11.76895 -11.40476 -11.02366 -10.89071 -10.59277 -9.36390 -8.97383 -7.93558 -5.28800 1.44739 1.49235 1.55416 2.42729 2.76759 3.02060 3.27824 3.49572 3.62407 4.02059 4.07399 4.23540 4.25123 4.35106 4.38566 4.64222 4.69226 4.76818 4.80716 4.86933 4.90750 4.94132 5.09133 5.21503 5.33811 5.45806 5.86774 6.05476 6.11458 6.22135 6.86801 7.55751 8.56727 9.24204 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.078244 B = 0.006786 C = 0.006379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.767061 B = 4125.079005 C = 4388.468685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.068 4.068 3 Si 0.986 3.014 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.235 4.235 8 H 0.088 0.912 9 N -0.643 5.643 10 C 0.134 3.866 11 C 0.051 3.949 12 N -0.530 5.530 13 C 0.017 3.983 14 C 0.067 3.933 15 O -0.401 6.401 16 C 0.070 3.930 17 C 0.017 3.983 18 C 0.174 3.826 19 H 0.250 0.750 20 H 0.051 0.949 21 H 0.049 0.951 22 H 0.061 0.939 23 H 0.038 0.962 24 H 0.092 0.908 25 H 0.060 0.940 26 H 0.121 0.879 27 H 0.060 0.940 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.038 0.962 31 H 0.019 0.981 32 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.623 -13.984 -0.960 14.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.813 3.187 4 H -0.199 1.199 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.363 4.363 8 H 0.106 0.894 9 N -0.370 5.370 10 C 0.008 3.992 11 C -0.058 4.058 12 N -0.256 5.256 13 C -0.111 4.111 14 C -0.010 4.010 15 O -0.320 6.320 16 C -0.007 4.007 17 C -0.111 4.111 18 C 0.047 3.953 19 H 0.059 0.941 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.056 0.944 24 H 0.110 0.890 25 H 0.079 0.921 26 H 0.139 0.861 27 H 0.079 0.921 28 H 0.136 0.864 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.036 0.964 32 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.718 -13.734 -0.565 13.853 hybrid contribution 0.503 1.402 -0.581 1.599 sum -1.216 -12.332 -1.145 12.445 Atomic orbital electron populations 1.70032 1.06642 1.25909 1.57687 1.25741 0.96644 1.01160 1.02548 0.85051 0.77091 0.78150 0.78412 1.19929 1.21867 1.20127 1.19324 0.90798 0.82570 1.43572 0.89416 1.45741 1.04196 1.00774 1.86258 1.22484 0.94945 0.84011 0.97751 1.23543 0.96005 0.89998 0.96295 1.62354 1.04902 1.02487 1.55888 1.22842 0.97429 0.90508 1.00351 1.22786 0.84654 0.97557 0.96014 1.87924 1.29277 1.39216 1.75612 1.22726 0.92971 0.83612 1.01401 1.22805 0.92011 1.00164 0.96127 1.21925 0.87384 0.89929 0.96031 0.94121 0.93124 0.93299 0.92079 0.94376 0.89014 0.92140 0.86123 0.92139 0.86363 0.90168 0.94403 0.96355 0.94738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.05 11.51 21.65 0.25 -58.80 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.99 46.19 29.55 68.60 2.03 48.22 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.23 -13.57 10.75 84.03 0.90 -12.67 16 8 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 9 N -0.64 -34.58 3.78 -737.82 -2.79 -37.38 16 10 C 0.13 5.59 7.22 83.18 0.60 6.19 16 11 C 0.05 2.00 3.55 45.42 0.16 2.16 16 12 N -0.53 -17.00 4.72 -868.79 -4.10 -21.10 16 13 C 0.02 0.43 5.44 86.31 0.47 0.90 16 14 C 0.07 1.45 7.01 72.01 0.50 1.95 16 15 O -0.40 -10.00 10.83 -148.98 -1.61 -11.61 16 16 C 0.07 1.61 7.01 72.02 0.50 2.11 16 17 C 0.02 0.49 5.66 86.31 0.49 0.97 16 18 C 0.17 8.70 7.22 83.23 0.60 9.30 16 19 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 20 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 21 H 0.05 1.98 7.91 -2.39 -0.02 1.96 16 22 H 0.06 2.47 8.13 -2.39 -0.02 2.45 16 23 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.09 2.27 7.02 -2.38 -0.02 2.26 16 25 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.03 1.93 7.12 -2.38 -0.02 1.91 16 Total: -1.00 -67.52 260.66 -0.45 -67.97 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.08 Total: 5.27 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 4.70 Total: 7.43 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -6.64 Total: -117.27 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: -1.61 Total: -11.61 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -67.52 -0.45 -67.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261120393.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.922 kcal (2) G-P(sol) polarization free energy of solvation -67.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds