Wall clock time and date at job start Mon Mar 30 2020 03:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.78014 * 2 1 4 4 C 1.54930 * 110.72467 * 123.24866 * 2 1 3 5 5 N 1.48532 * 103.37978 * 155.69107 * 4 2 1 6 6 C 1.46897 * 110.99911 * 200.36537 * 5 4 2 7 7 C 1.48066 * 105.73402 * 321.01889 * 5 4 2 8 8 C 1.53996 * 107.14079 * 25.08449 * 7 5 4 9 9 H 1.09000 * 110.31173 * 117.82866 * 8 7 5 10 10 N 1.46505 * 110.30763 * 239.99908 * 8 7 5 11 11 C 1.34779 * 119.99741 * 266.21393 * 10 8 7 12 12 O 1.21688 * 120.00125 * 359.97438 * 11 10 8 13 13 C 1.46377 * 119.99815 * 180.02562 * 11 10 8 14 14 H 1.08001 * 119.99887 * 5.75781 * 13 11 10 15 15 C 1.40041 * 119.99947 * 185.76209 * 13 11 10 16 16 N 1.30671 * 120.00020 * 354.16227 * 15 13 11 17 17 Si 1.86800 * 120.00019 * 174.16029 * 15 13 11 18 18 H 1.48506 * 109.46922 * 94.98699 * 17 15 13 19 19 H 1.48497 * 109.47314 * 214.98656 * 17 15 13 20 20 H 1.48504 * 109.47324 * 334.99289 * 17 15 13 21 21 H 1.09004 * 109.47133 * 303.95597 * 1 2 3 22 22 H 1.08998 * 109.47398 * 63.94963 * 1 2 3 23 23 H 1.08991 * 109.47334 * 183.95330 * 1 2 3 24 24 H 1.09003 * 110.67134 * 274.20724 * 4 2 1 25 25 H 1.09004 * 110.66550 * 37.16933 * 4 2 1 26 26 H 1.08997 * 109.47250 * 59.99987 * 6 5 4 27 27 H 1.09002 * 109.46800 * 179.97438 * 6 5 4 28 28 H 1.08999 * 109.47095 * 299.99165 * 6 5 4 29 29 H 1.08994 * 109.75918 * 265.76635 * 7 5 4 30 30 H 1.08997 * 110.15582 * 144.61347 * 7 5 4 31 31 H 0.97001 * 119.99867 * 86.20985 * 10 8 7 32 32 H 0.97003 * 119.99663 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0783 -0.7945 1.2118 5 7 3.4316 -1.2127 0.7648 6 6 3.9165 -2.3544 1.5518 7 6 3.2893 -1.5709 -0.6648 8 6 2.0771 -0.7927 -1.2092 9 1 2.3896 -0.1098 -1.9992 10 7 1.0605 -1.7209 -1.7107 11 6 1.0410 -2.0582 -3.0154 12 8 1.8674 -1.5915 -3.7770 13 6 0.0250 -2.9852 -3.5165 14 1 -0.7643 -3.3261 -2.8629 15 6 0.0765 -3.4300 -4.8434 16 7 0.9614 -2.9317 -5.6657 17 14 -1.1198 -4.7357 -5.4379 18 1 -2.2906 -4.0810 -6.0752 19 1 -0.4438 -5.6128 -6.4273 20 1 -1.5763 -5.5511 -4.2838 21 1 -0.3634 0.5740 0.8524 22 1 -0.3634 0.4513 -0.9232 23 1 -0.3633 -1.0251 0.0708 24 1 2.1444 -0.1557 2.0926 25 1 1.4543 -1.6647 1.4154 26 1 3.2333 -3.1951 1.4313 27 1 4.9089 -2.6403 1.2035 28 1 3.9670 -2.0750 2.6042 29 1 3.1161 -2.6427 -0.7607 30 1 4.1880 -1.2896 -1.2137 31 1 0.4016 -2.0927 -1.1036 32 1 0.9972 -3.2401 -6.5847 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306458208.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:09 Heat of formation + Delta-G solvation = -35.339330 kcal Electronic energy + Delta-G solvation = -14544.123989 eV Core-core repulsion = 12118.445540 eV Total energy + Delta-G solvation = -2425.678449 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.23423 -36.67078 -33.71593 -32.48023 -31.23372 -28.69028 -26.74076 -25.90173 -23.90428 -20.85629 -20.43965 -18.80737 -17.42731 -15.74415 -15.23267 -15.09124 -14.29794 -14.11970 -13.97106 -13.21766 -12.95180 -12.36751 -12.33170 -12.10538 -11.85351 -11.30697 -11.21455 -11.10809 -10.85825 -10.77536 -10.47172 -10.44190 -10.16704 -10.06501 -8.85885 -8.29136 -7.60479 -7.48810 -6.19857 -4.64471 3.12624 3.20094 3.23761 4.08693 4.25727 4.56649 4.85670 4.94409 5.06656 5.28554 5.50013 5.58032 5.71059 5.78181 5.80787 5.85182 5.93666 5.98467 6.09117 6.14669 6.38667 6.52570 6.55755 6.72491 7.05468 7.25186 7.42790 7.93035 8.12175 8.33354 9.02063 9.53305 10.59519 10.78432 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.043676 B = 0.007953 C = 0.007681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.934077 B = 3519.926959 C = 3644.677378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 H 0.084 0.916 4 C 0.039 3.961 5 N -0.526 5.526 6 C 0.018 3.982 7 C 0.025 3.975 8 C 0.148 3.852 9 H 0.090 0.910 10 N -0.758 5.758 11 C 0.555 3.445 12 O -0.580 6.580 13 C -0.547 4.547 14 H 0.066 0.934 15 C 0.088 3.912 16 N -0.767 5.767 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.279 1.279 20 H -0.265 1.265 21 H 0.049 0.951 22 H 0.063 0.937 23 H 0.056 0.944 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.026 0.974 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.379 0.621 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.124 1.548 11.789 11.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.124 4.124 3 H 0.102 0.898 4 C -0.089 4.089 5 N -0.250 5.250 6 C -0.131 4.131 7 C -0.105 4.105 8 C 0.041 3.959 9 H 0.108 0.892 10 N -0.413 5.413 11 C 0.359 3.641 12 O -0.463 6.463 13 C -0.584 4.584 14 H 0.084 0.916 15 C -0.132 4.132 16 N -0.396 5.396 17 Si 0.730 3.270 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.189 1.189 21 H 0.068 0.932 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.093 0.907 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.212 0.788 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.965 2.296 11.088 11.364 hybrid contribution -1.374 -1.625 -0.056 2.129 sum -0.409 0.671 11.032 11.060 Atomic orbital electron populations 1.21636 0.94306 1.01731 1.01604 1.22362 0.95993 0.99563 0.94521 0.89802 1.23283 0.89305 0.98401 0.97886 1.64758 1.23465 1.33372 1.03367 1.22471 1.00350 0.92093 0.98179 1.23494 0.99870 0.99440 0.87650 1.21298 0.88114 0.91569 0.94952 0.89210 1.46321 1.33835 1.50180 1.11008 1.18232 0.85428 0.81373 0.79068 1.90597 1.42886 1.57170 1.55626 1.20873 1.12192 1.28656 0.96671 0.91562 1.25693 0.95152 0.95938 0.96377 1.70026 1.29593 1.35438 1.04511 0.86393 0.80632 0.80923 0.79014 1.19817 1.20399 1.18922 0.93242 0.91825 0.92516 0.90659 0.93885 0.95507 0.91580 0.91819 0.93082 0.90438 0.78764 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.48 37.16 0.31 -1.58 16 2 C -0.10 -1.59 3.63 -88.76 -0.32 -1.91 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 4 C 0.04 0.54 6.00 -1.90 -0.01 0.53 16 5 N -0.53 -8.10 5.56 -238.58 -1.33 -9.43 16 6 C 0.02 0.24 9.42 60.06 0.57 0.80 16 7 C 0.02 0.45 6.51 -2.66 -0.02 0.44 16 8 C 0.15 2.90 3.30 -66.57 -0.22 2.68 16 9 H 0.09 2.00 7.43 -51.93 -0.39 1.62 16 10 N -0.76 -16.76 4.28 -53.89 -0.23 -16.99 16 11 C 0.56 15.66 7.74 -12.99 -0.10 15.56 16 12 O -0.58 -18.69 14.62 5.20 0.08 -18.61 16 13 C -0.55 -15.42 9.54 -35.63 -0.34 -15.76 16 14 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 15 C 0.09 2.46 5.49 -17.37 -0.10 2.37 16 16 N -0.77 -23.04 11.85 55.55 0.66 -22.39 16 17 Si 0.91 20.15 29.56 -169.99 -5.03 15.13 16 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 23 H 0.06 0.80 6.34 -51.93 -0.33 0.47 16 24 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.04 0.59 7.86 -51.93 -0.41 0.19 16 26 H 0.03 0.35 8.00 -51.93 -0.42 -0.06 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 1.01 7.48 -51.93 -0.39 0.62 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 31 H 0.38 7.53 6.65 -40.82 -0.27 7.26 16 32 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 LS Contribution 264.18 15.07 3.98 3.98 Total: -1.00 -32.82 264.18 -6.79 -39.61 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.70 Total: 5.57 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -0.23 Total: 3.12 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.90 Total: -48.81 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.08 Total: -18.61 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -32.82 -6.79 -39.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306458208.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.270 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds