Wall clock time and date at job start Mon Mar 30 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46348 * 2 1 4 4 C 1.53038 * 109.46237 * 240.03478 * 2 1 3 5 5 C 1.53117 * 109.27983 * 180.80239 * 4 2 1 6 6 C 1.53121 * 109.16146 * 57.65153 * 5 4 2 7 7 H 1.09001 * 109.53205 * 62.30864 * 6 5 4 8 8 C 1.50700 * 109.50463 * 182.40425 * 6 5 4 9 9 O 1.21293 * 119.99810 * 359.80462 * 8 6 5 10 10 N 1.34777 * 119.99675 * 180.08334 * 8 6 5 11 11 C 1.37102 * 119.99634 * 179.72687 * 10 8 6 12 12 H 1.08002 * 119.99868 * 359.97438 * 11 10 8 13 13 C 1.38945 * 119.99860 * 179.97438 * 11 10 8 14 14 N 1.31414 * 119.99894 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99956 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47031 * 60.00269 * 15 13 11 17 17 H 1.48504 * 109.46971 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47038 * 300.00246 * 15 13 11 19 19 C 1.53037 * 109.27631 * 302.34856 * 6 5 4 20 20 N 1.46843 * 109.46519 * 119.97922 * 2 1 3 21 21 H 1.09007 * 109.47223 * 300.01879 * 1 2 3 22 22 H 1.09003 * 109.47440 * 60.01782 * 1 2 3 23 23 H 1.09002 * 109.47243 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.50135 * 300.74621 * 4 2 1 25 25 H 1.09007 * 109.50406 * 60.82374 * 4 2 1 26 26 H 1.08997 * 109.52116 * 297.74976 * 5 4 2 27 27 H 1.09004 * 109.52726 * 177.55928 * 5 4 2 28 28 H 0.97001 * 120.00485 * 359.71840 * 10 8 6 29 29 H 0.97004 * 119.99542 * 179.97438 * 14 13 11 30 30 H 1.09010 * 109.45834 * 179.19103 * 19 6 5 31 31 H 1.08999 * 109.46363 * 299.16802 * 19 6 5 32 32 H 1.00894 * 111.00129 * 305.85529 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7207 -1.2501 5 6 3.5709 -0.7358 -1.2358 6 6 4.0548 -1.4187 0.0465 7 1 3.7131 -2.4537 0.0595 8 6 5.5606 -1.3853 0.0968 9 8 6.1863 -0.8699 -0.8054 10 7 6.2122 -1.9333 1.1416 11 6 7.5823 -1.9079 1.1847 12 1 8.1394 -1.4492 0.3812 13 6 8.2541 -2.4723 2.2621 14 7 7.5761 -3.0309 3.2395 15 14 10.1208 -2.4384 2.3204 16 1 10.5911 -1.0300 2.3025 17 1 10.5893 -3.1013 3.5640 18 1 10.6661 -3.1574 1.1411 19 6 3.4865 -0.6777 1.2589 20 7 2.0193 -0.6918 1.1993 21 1 -0.3634 0.5142 0.8899 22 1 -0.3634 0.5136 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 1.6659 -1.7445 -1.2578 25 1 1.6888 -0.1982 -2.1400 26 1 3.9456 0.2872 -1.2673 27 1 3.9379 -1.2860 -2.1023 28 1 5.7118 -2.3455 1.8632 29 1 8.0452 -3.4252 3.9915 30 1 3.8175 -1.1701 2.1734 31 1 3.8402 0.3533 1.2530 32 1 1.6196 -0.2928 2.0353 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307507646.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:06 Heat of formation + Delta-G solvation = -57.597350 kcal Electronic energy + Delta-G solvation = -14334.916832 eV Core-core repulsion = 11908.273203 eV Total energy + Delta-G solvation = -2426.643629 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.21220 -37.31738 -33.98119 -32.40614 -31.65535 -31.01251 -27.33091 -24.72948 -23.25822 -21.91372 -19.90138 -18.77217 -17.88704 -16.30758 -15.47371 -14.91943 -14.39612 -14.09000 -13.91918 -13.79724 -13.12315 -12.85667 -12.70259 -11.99945 -11.85042 -11.80535 -11.49369 -11.07436 -10.78503 -10.54351 -10.42756 -10.33941 -10.17402 -9.95175 -9.48679 -8.31871 -8.28292 -7.94874 -6.39931 -3.80842 3.20923 3.26634 3.31220 3.89645 4.17984 4.32866 4.93226 4.96326 5.13147 5.21034 5.27999 5.43731 5.58815 5.68941 5.77717 5.79542 5.91421 6.03969 6.10389 6.18932 6.25880 6.29089 6.48336 6.65802 6.78381 7.20866 7.54274 7.56480 8.07898 8.63072 9.19181 9.57151 10.08702 10.77573 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.064311 B = 0.006924 C = 0.006422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.279534 B = 4043.081379 C = 4358.661425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.080 3.920 3 H 0.035 0.965 4 C -0.112 4.112 5 C -0.096 4.096 6 C -0.094 4.094 7 H 0.088 0.912 8 C 0.444 3.556 9 O -0.597 6.597 10 N -0.560 5.560 11 C -0.302 4.302 12 H 0.102 0.898 13 C 0.023 3.977 14 N -0.901 5.901 15 Si 0.930 3.070 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.274 1.274 19 C 0.069 3.931 20 N -0.684 5.684 21 H 0.050 0.950 22 H 0.057 0.943 23 H 0.063 0.937 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.393 0.607 29 H 0.272 0.728 30 H 0.081 0.919 31 H 0.032 0.968 32 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.694 3.600 -2.348 12.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.030 4.030 3 H 0.053 0.947 4 C -0.150 4.150 5 C -0.134 4.134 6 C -0.116 4.116 7 H 0.106 0.894 8 C 0.230 3.770 9 O -0.482 6.482 10 N -0.195 5.195 11 C -0.432 4.432 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.542 5.542 15 Si 0.757 3.243 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.199 1.199 19 C -0.060 4.060 20 N -0.316 5.316 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.227 0.773 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.221 3.223 -3.051 12.066 hybrid contribution 0.852 0.622 0.873 1.369 sum -10.368 3.845 -2.178 11.271 Atomic orbital electron populations 1.21819 0.94729 1.02395 1.01248 1.21503 0.94643 0.95329 0.91481 0.94677 1.21669 0.96176 1.01029 0.96085 1.21301 0.93632 1.01315 0.97112 1.21177 0.93807 1.01049 0.95561 0.89387 1.19880 0.88439 0.84333 0.84391 1.90501 1.68694 1.50082 1.38944 1.41929 1.07260 1.50639 1.19699 1.19683 0.81576 1.35501 1.06452 0.88038 1.25262 1.00628 0.96647 0.95314 1.69611 1.36574 1.38163 1.09833 0.85925 0.82247 0.78585 0.77498 1.19935 1.20949 1.19899 1.21879 0.86653 0.98960 0.98519 1.60335 1.07580 1.59224 1.04495 0.93045 0.92370 0.91809 0.91316 0.91878 0.91845 0.91408 0.77318 0.91801 0.90100 0.94922 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.43 37.16 0.35 -1.09 16 2 C 0.08 1.02 3.04 -67.73 -0.21 0.81 16 3 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 4 C -0.11 -1.50 5.37 -26.65 -0.14 -1.65 16 5 C -0.10 -1.64 4.58 -26.61 -0.12 -1.76 16 6 C -0.09 -1.77 2.69 -91.69 -0.25 -2.02 16 7 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 8 C 0.44 10.84 7.11 -10.98 -0.08 10.77 16 9 O -0.60 -16.67 15.55 5.55 0.09 -16.58 16 10 N -0.56 -14.52 5.19 -10.96 -0.06 -14.58 16 11 C -0.30 -8.58 9.68 -14.93 -0.14 -8.72 16 12 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 13 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 14 N -0.90 -24.75 13.05 55.50 0.72 -24.02 16 15 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 C 0.07 1.16 5.72 -3.83 -0.02 1.14 16 20 N -0.68 -9.44 6.50 -106.76 -0.69 -10.13 16 21 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 26 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.39 9.80 7.34 -40.82 -0.30 9.50 16 29 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.08 1.38 7.60 -51.92 -0.39 0.98 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.34 4.01 8.79 -39.30 -0.35 3.67 16 LS Contribution 264.82 15.07 3.99 3.99 Total: -1.00 -30.57 264.82 -6.45 -37.02 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -4.77 Total: 10.08 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -0.71 Total: -1.99 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.03 Total: -48.73 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.09 Total: -16.58 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.57 -6.45 -37.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307507646.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.577 kcal (2) G-P(sol) polarization free energy of solvation -30.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds