Wall clock time and date at job start Mon Mar 30 2020 03:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46137 * 2 1 4 4 N 1.46846 * 109.46123 * 240.03637 * 2 1 3 5 5 C 1.46851 * 111.19614 * 178.23824 * 4 2 1 6 6 C 1.53033 * 109.52268 * 61.74460 * 5 4 2 7 7 C 1.53122 * 109.27701 * 300.81815 * 6 5 4 8 8 C 1.53031 * 109.46607 * 119.97803 * 2 1 3 9 9 H 1.09001 * 109.50225 * 59.21631 * 8 2 1 10 10 C 1.50695 * 109.50726 * 299.13789 * 8 2 1 11 11 O 1.21297 * 119.99943 * 0.02562 * 10 8 2 12 12 N 1.34779 * 120.00454 * 179.97438 * 10 8 2 13 13 C 1.37099 * 120.00130 * 180.02562 * 12 10 8 14 14 H 1.07998 * 120.00049 * 359.97438 * 13 12 10 15 15 C 1.38949 * 119.99753 * 180.02562 * 13 12 10 16 16 N 1.31406 * 120.00069 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99709 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99702 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99882 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99875 * 17 15 13 21 21 H 1.09000 * 109.46734 * 300.01583 * 1 2 3 22 22 H 1.09001 * 109.47368 * 60.01804 * 1 2 3 23 23 H 1.09002 * 109.47086 * 180.02562 * 1 2 3 24 24 H 1.00896 * 111.00521 * 54.14359 * 4 2 1 25 25 H 1.09004 * 109.46252 * 181.75342 * 5 4 2 26 26 H 1.08996 * 109.46465 * 301.73219 * 5 4 2 27 27 H 1.08997 * 109.50591 * 60.75728 * 6 5 4 28 28 H 1.09003 * 109.50326 * 180.84127 * 6 5 4 29 29 H 1.09006 * 109.52222 * 297.75014 * 7 6 5 30 30 H 1.09000 * 109.52220 * 177.56668 * 7 6 5 31 31 H 0.97006 * 119.99547 * 0.02562 * 12 10 8 32 32 H 0.97001 * 120.00308 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0192 -0.6915 -1.1995 5 6 3.4865 -0.6774 -1.2592 6 6 4.0548 -1.4187 -0.0471 7 6 3.5710 -0.7361 1.2354 8 6 2.0400 -0.7209 1.2498 9 1 1.6654 -1.7446 1.2577 10 6 1.5556 0.0015 2.4804 11 8 0.8692 0.9955 2.3693 12 7 1.8840 -0.4572 3.7044 13 6 1.4429 0.1998 4.8239 14 1 0.8325 1.0853 4.7250 15 6 1.7820 -0.2729 6.0857 16 7 2.5251 -1.3499 6.2060 17 14 1.1815 0.6228 7.6110 18 1 2.1754 1.6543 8.0029 19 1 1.0125 -0.3488 8.7213 20 1 -0.1209 1.2750 7.3216 21 1 -0.3633 0.5141 0.8899 22 1 -0.3634 0.5135 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.6195 -0.2923 -2.0355 25 1 3.8175 -1.1695 -2.1738 26 1 3.8403 0.3535 -1.2531 27 1 3.7125 -2.4534 -0.0599 28 1 5.1440 -1.3951 -0.0839 29 1 3.9457 0.2870 1.2672 30 1 3.9381 -1.2864 2.1017 31 1 2.4326 -1.2523 3.7932 32 1 2.8373 -1.8148 5.4140 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307606853.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:04 Heat of formation + Delta-G solvation = -52.649481 kcal Electronic energy + Delta-G solvation = -14630.098996 eV Core-core repulsion = 12203.669923 eV Total energy + Delta-G solvation = -2426.429073 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.47798 -37.21141 -34.39195 -32.51982 -31.65247 -30.75865 -26.94368 -24.72642 -23.52109 -21.52784 -20.24639 -18.99877 -17.87227 -16.79981 -15.35174 -14.77711 -14.64695 -14.03900 -13.98555 -13.81887 -13.53689 -12.82626 -12.70621 -11.95952 -11.73343 -11.32831 -11.22085 -10.94640 -10.85532 -10.67523 -10.35352 -10.21816 -10.04101 -9.83999 -9.49677 -8.33226 -8.23515 -8.00761 -6.74569 -3.87421 3.31006 3.35416 3.54663 3.85530 4.17313 4.35294 4.89543 4.97763 5.10452 5.13086 5.35531 5.37864 5.56766 5.70883 5.78111 5.83855 5.95957 6.10094 6.11985 6.19960 6.22786 6.37554 6.44179 6.59604 6.92168 7.23180 7.53256 7.81964 8.09743 8.61388 8.81271 9.49633 9.89991 10.68854 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.050435 B = 0.008120 C = 0.007276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.035161 B = 3447.633805 C = 3847.275130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.111 3.889 3 H 0.042 0.958 4 N -0.690 5.690 5 C 0.058 3.942 6 C -0.115 4.115 7 C -0.113 4.113 8 C -0.090 4.090 9 H 0.087 0.913 10 C 0.449 3.551 11 O -0.587 6.587 12 N -0.571 5.571 13 C -0.383 4.383 14 H 0.099 0.901 15 C -0.010 4.010 16 N -0.901 5.901 17 Si 1.093 2.907 18 H -0.285 1.285 19 H -0.281 1.281 20 H -0.284 1.284 21 H 0.095 0.905 22 H 0.041 0.959 23 H 0.051 0.949 24 H 0.339 0.661 25 H 0.070 0.930 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.376 0.624 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 -0.750 -11.086 11.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.002 3.998 3 H 0.060 0.940 4 N -0.322 5.322 5 C -0.072 4.072 6 C -0.153 4.153 7 C -0.151 4.151 8 C -0.112 4.112 9 H 0.105 0.895 10 C 0.236 3.764 11 O -0.472 6.472 12 N -0.208 5.208 13 C -0.513 4.513 14 H 0.117 0.883 15 C -0.212 4.212 16 N -0.540 5.540 17 Si 0.919 3.081 18 H -0.211 1.211 19 H -0.206 1.206 20 H -0.209 1.209 21 H 0.113 0.887 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.157 0.843 25 H 0.088 0.912 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.209 0.791 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.693 -0.717 -9.167 9.349 hybrid contribution 0.561 0.413 -1.947 2.068 sum 2.254 -0.305 -11.114 11.344 Atomic orbital electron populations 1.22037 0.93938 1.01864 1.03191 1.21072 0.95752 0.94685 0.88321 0.94044 1.60345 1.06769 1.60033 1.05007 1.21896 0.88304 0.98441 0.98532 1.21587 0.99445 1.00193 0.94093 1.21584 0.94524 1.01113 0.97876 1.21175 0.95722 1.00574 0.93762 0.89514 1.19724 0.85419 0.87276 0.84020 1.90444 1.42506 1.28116 1.86174 1.41969 1.46801 1.26647 1.05335 1.20592 1.33268 1.12263 0.85155 0.88286 1.26506 0.96296 0.97355 1.01049 1.70863 1.33282 1.17519 1.32327 0.83097 0.76099 0.75024 0.73833 1.21143 1.20626 1.20934 0.88667 0.93956 0.93008 0.84328 0.91155 0.95486 0.91135 0.91676 0.91997 0.91463 0.79082 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.12 37.16 0.34 -2.29 16 2 C 0.11 1.91 2.20 -67.73 -0.15 1.76 16 3 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 4 N -0.69 -9.64 6.50 -106.76 -0.69 -10.34 16 5 C 0.06 0.72 6.55 -3.83 -0.03 0.70 16 6 C -0.12 -1.52 6.09 -26.65 -0.16 -1.68 16 7 C -0.11 -1.85 5.16 -26.61 -0.14 -1.99 16 8 C -0.09 -1.69 2.21 -91.70 -0.20 -1.89 16 9 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 10 C 0.45 10.77 6.82 -10.99 -0.07 10.69 16 11 O -0.59 -15.81 13.29 5.54 0.07 -15.74 16 12 N -0.57 -14.60 5.19 -10.96 -0.06 -14.66 16 13 C -0.38 -10.88 9.68 -14.93 -0.14 -11.02 16 14 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 15 C -0.01 -0.26 5.50 -17.47 -0.10 -0.36 16 16 N -0.90 -25.48 13.68 55.50 0.76 -24.72 16 17 Si 1.09 24.50 29.92 -169.99 -5.09 19.41 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H 0.09 1.96 5.59 -51.93 -0.29 1.67 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.34 4.07 8.79 -39.29 -0.35 3.72 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.10 7.66 -51.93 -0.40 0.71 16 31 H 0.38 9.01 6.21 -40.82 -0.25 8.75 16 32 H 0.26 7.15 6.78 -40.82 -0.28 6.87 16 LS Contribution 258.64 15.07 3.90 3.90 Total: -1.00 -31.05 258.64 -6.30 -37.35 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -4.54 Total: 10.87 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -0.65 Total: -6.08 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.01 Total: -49.72 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.07 Total: -15.74 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.09 Total: 19.41 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.05 -6.30 -37.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307606853.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.300 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds