Wall clock time and date at job start Mon Mar 30 2020 02:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99593 * 2 1 4 4 H 1.48504 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47033 * 299.99752 * 3 2 1 6 6 H 1.48492 * 109.47243 * 60.00212 * 3 2 1 7 7 C 1.38813 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00206 * 197.39935 * 7 2 1 9 9 N 1.36934 * 119.99496 * 17.40342 * 7 2 1 10 10 C 1.46960 * 120.68869 * 27.74945 * 9 7 2 11 11 C 1.53165 * 108.61097 * 125.87840 * 10 9 7 12 12 C 1.50844 * 109.83611 * 54.06504 * 11 10 9 13 13 H 1.08999 * 108.80398 * 179.77487 * 12 11 10 14 14 O 1.42887 * 109.47559 * 60.94511 * 12 11 10 15 15 C 1.43080 * 113.54747 * 178.90277 * 14 12 11 16 16 C 1.53065 * 109.36525 * 58.26595 * 15 14 12 17 17 N 1.47068 * 110.20788 * 304.07971 * 16 15 14 18 18 C 1.47274 * 110.47534 * 57.28554 * 17 16 15 19 19 H 1.09002 * 109.72278 * 181.64045 * 18 17 16 20 20 C 1.46859 * 120.68364 * 207.71786 * 9 7 2 21 21 H 0.96994 * 120.00499 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.60911 * 245.61213 * 10 9 7 23 23 H 1.08997 * 109.61046 * 6.13649 * 10 9 7 24 24 H 1.09005 * 109.45236 * 174.58904 * 11 10 9 25 25 H 1.08998 * 109.45522 * 294.54343 * 11 10 9 26 26 H 1.08998 * 109.48677 * 178.23859 * 15 14 12 27 27 H 1.09007 * 109.48677 * 298.27763 * 15 14 12 28 28 H 1.09011 * 109.47260 * 63.56430 * 16 15 14 29 29 H 1.08999 * 109.47791 * 183.58421 * 16 15 14 30 30 H 1.00898 * 110.24553 * 294.22893 * 17 16 15 31 31 H 1.09008 * 109.55408 * 114.18460 * 20 9 7 32 32 H 1.09002 * 109.64094 * 353.92999 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0532 -1.2233 0.2802 9 7 1.3727 -2.3610 -0.3537 10 6 0.2294 -2.3361 -1.2767 11 6 0.5142 -3.2983 -2.4338 12 6 0.8512 -4.6651 -1.8917 13 1 1.0466 -5.3363 -2.7280 14 8 -0.2584 -5.1686 -1.1455 15 6 -0.0407 -6.4774 -0.6102 16 6 1.1938 -6.4568 0.2945 17 7 2.3592 -5.9530 -0.4477 18 6 2.0853 -4.6104 -0.9873 19 1 2.9452 -4.2612 -1.5589 20 6 1.8177 -3.6546 0.1805 21 1 -0.4850 0.8400 0.0004 22 1 -0.6718 -2.6521 -0.7514 23 1 0.0946 -1.3265 -1.6650 24 1 -0.3640 -3.3637 -3.0762 25 1 1.3608 -2.9294 -3.0127 26 1 -0.9116 -6.7826 -0.0302 27 1 0.1179 -7.1824 -1.4264 28 1 1.0104 -5.7995 1.1446 29 1 1.3988 -7.4657 0.6527 30 1 2.6079 -6.5953 -1.1850 31 1 1.0410 -4.0710 0.8222 32 1 2.7326 -3.5178 0.7570 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403976348.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:18 Heat of formation + Delta-G solvation = -37.209159 kcal Electronic energy + Delta-G solvation = -15225.761964 eV Core-core repulsion = 12800.002434 eV Total energy + Delta-G solvation = -2425.759530 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.25448 -37.57360 -35.74070 -34.32051 -32.20262 -30.83943 -28.01868 -26.84537 -24.47774 -23.83044 -22.59638 -20.06317 -18.75687 -17.60800 -17.02674 -16.81716 -16.28071 -16.11806 -15.78994 -15.08650 -14.79266 -14.10304 -13.78552 -13.53171 -13.26929 -13.02213 -12.73623 -12.51873 -12.35779 -12.23348 -11.96253 -11.76834 -11.48186 -11.33897 -10.94875 -10.55959 -9.19927 -8.67971 -7.88175 -5.34292 1.46618 1.47769 1.59448 2.49949 2.86852 3.17398 3.26984 3.71401 3.81410 3.97480 4.06483 4.15467 4.28512 4.37613 4.49927 4.57537 4.71717 4.85076 4.93635 4.96596 5.06123 5.10004 5.27366 5.44527 5.62508 5.74796 5.87086 6.30746 6.37836 6.46025 7.13123 7.83596 8.37121 9.18814 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.054311 B = 0.009652 C = 0.009077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.429623 B = 2900.399476 C = 3083.861851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.292 1.292 7 C -0.265 4.265 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.186 3.814 11 C -0.127 4.127 12 C 0.076 3.924 13 H 0.066 0.934 14 O -0.400 6.400 15 C 0.020 3.980 16 C 0.015 3.985 17 N -0.670 5.670 18 C 0.050 3.950 19 H 0.089 0.911 20 C 0.163 3.837 21 H 0.250 0.750 22 H -0.008 1.008 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.105 0.895 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.114 0.886 30 H 0.349 0.651 31 H 0.010 0.990 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.562 -12.775 -4.177 13.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.219 1.219 7 C -0.395 4.395 8 H 0.085 0.915 9 N -0.331 5.331 10 C 0.060 3.940 11 C -0.167 4.167 12 C 0.017 3.983 13 H 0.084 0.916 14 O -0.320 6.320 15 C -0.058 4.058 16 C -0.114 4.114 17 N -0.299 5.299 18 C -0.062 4.062 19 H 0.107 0.893 20 C 0.037 3.963 21 H 0.059 0.941 22 H 0.010 0.990 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.123 0.877 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.132 0.868 30 H 0.168 0.832 31 H 0.028 0.972 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.671 -12.315 -3.552 13.092 hybrid contribution -0.427 0.762 -0.494 1.004 sum 2.244 -11.553 -4.046 12.445 Atomic orbital electron populations 1.70223 1.06823 1.25865 1.55265 1.25850 0.96046 1.01668 1.01110 0.85161 0.78632 0.79522 0.76844 1.18933 1.21394 1.21943 1.19561 0.93000 0.85935 1.40971 0.91510 1.44282 1.35834 1.01968 1.51022 1.20436 0.87677 0.97210 0.88693 1.21651 1.01889 0.94391 0.98720 1.22143 0.87607 0.95700 0.92863 0.91574 1.88112 1.39130 1.33413 1.71299 1.23412 1.00473 0.84179 0.97742 1.22759 0.89144 1.02262 0.97254 1.61291 1.35692 1.02854 1.30095 1.22501 0.96836 0.90358 0.96525 0.89300 1.20796 0.96613 0.85513 0.93347 0.94052 0.99021 0.92642 0.90993 0.90536 0.87671 0.91424 0.92118 0.86788 0.83229 0.97226 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.20 11.19 21.65 0.24 -56.96 16 2 C -0.05 -2.96 4.91 84.86 0.42 -2.54 16 3 Si 0.97 45.73 29.59 68.60 2.03 47.76 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.26 -15.10 9.59 84.03 0.81 -14.30 16 8 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 9 N -0.61 -32.19 2.99 -699.09 -2.09 -34.28 16 10 C 0.19 9.52 5.12 86.35 0.44 9.96 16 11 C -0.13 -5.00 5.73 29.95 0.17 -4.83 16 12 C 0.08 2.61 2.79 29.93 0.08 2.69 16 13 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 14 O -0.40 -14.48 9.44 -148.98 -1.41 -15.88 16 15 C 0.02 0.51 7.02 72.00 0.51 1.01 16 16 C 0.02 0.39 6.31 86.29 0.54 0.94 16 17 N -0.67 -18.44 6.78 -489.59 -3.32 -21.76 16 18 C 0.05 1.74 3.25 44.96 0.15 1.88 16 19 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 20 C 0.16 7.36 5.53 86.40 0.48 7.84 16 21 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 22 H -0.01 -0.48 7.87 -2.39 -0.02 -0.50 16 23 H 0.06 3.17 6.02 -2.39 -0.01 3.15 16 24 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 25 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 26 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.06 1.91 6.18 -2.38 -0.01 1.90 16 29 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.35 7.52 8.87 -89.70 -0.80 6.72 16 31 H 0.01 0.47 5.82 -2.38 -0.01 0.46 16 32 H 0.05 2.15 7.94 -2.39 -0.02 2.13 16 Total: -1.00 -66.98 247.46 -0.63 -67.61 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.31 Total: 10.85 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 3.59 Total: 2.66 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -5.17 Total: -113.00 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -1.41 Total: -15.88 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -66.98 -0.63 -67.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403976348.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.405 kcal (2) G-P(sol) polarization free energy of solvation -66.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds