Wall clock time and date at job start Mon Mar 30 2020 02:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 C 1.46767 * 124.35574 * 240.00137 * 4 2 1 6 6 C 1.54474 * 105.47646 * 197.01760 * 5 4 2 7 7 C 1.54632 * 101.76628 * 334.58484 * 6 5 4 8 8 H 1.09000 * 110.48381 * 265.98994 * 7 6 5 9 9 N 1.46497 * 110.48874 * 143.47509 * 7 6 5 10 10 C 1.36937 * 119.99973 * 154.99862 * 9 7 6 11 11 H 1.07999 * 120.00005 * 359.97438 * 10 9 7 12 12 C 1.38820 * 119.99985 * 180.02562 * 10 9 7 13 13 N 1.31614 * 119.99897 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 119.99871 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47270 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.46941 * 119.99649 * 14 12 10 17 17 H 1.48495 * 109.47177 * 239.99752 * 14 12 10 18 18 C 1.34427 * 124.34837 * 59.70118 * 4 2 1 19 19 O 1.21280 * 124.93813 * 359.57712 * 18 4 2 20 20 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 21 21 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 22 22 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 24 24 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 25 25 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 27 27 H 1.09001 * 110.24446 * 316.01833 * 5 4 2 28 28 H 1.08994 * 110.24496 * 78.01757 * 5 4 2 29 29 H 1.09003 * 110.97128 * 92.69826 * 6 5 4 30 30 H 1.09001 * 110.97076 * 216.42763 * 6 5 4 31 31 H 0.97001 * 120.00329 * 335.00401 * 9 7 6 32 32 H 0.97000 * 120.00301 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.8655 -1.8888 -1.1728 6 6 3.4723 -1.9923 -2.5896 7 6 2.4204 -1.2416 -3.4387 8 1 1.6981 -1.9422 -3.8579 9 7 3.0724 -0.4791 -4.5062 10 6 2.3815 -0.1708 -5.6476 11 1 1.3560 -0.4901 -5.7610 12 6 2.9995 0.5512 -6.6594 13 7 4.2494 0.9399 -6.5215 14 14 2.0573 0.9712 -8.2167 15 1 0.6799 0.4238 -8.1246 16 1 1.9935 2.4465 -8.3740 17 1 2.7490 0.3777 -9.3890 18 6 1.7432 -0.3117 -2.4562 19 8 1.0547 0.6391 -2.7609 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8933 -0.5139 0.8900 24 1 1.6768 1.9562 0.8900 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 3.6564 -1.7772 -0.4310 28 1 2.2645 -2.7715 -0.9545 29 1 4.4401 -1.4930 -2.6369 30 1 3.5568 -3.0329 -2.9028 31 1 3.9936 -0.1927 -4.4047 32 1 4.6814 1.4442 -7.2286 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642824521.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:00 Heat of formation + Delta-G solvation = -47.231186 kcal Electronic energy + Delta-G solvation = -14615.811900 eV Core-core repulsion = 12189.617782 eV Total energy + Delta-G solvation = -2426.194118 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.32939 -37.23587 -36.91324 -35.02707 -32.66280 -29.93621 -28.10887 -27.81973 -25.38471 -23.13319 -22.46621 -19.66261 -19.39161 -17.62950 -17.28657 -16.54663 -16.03566 -15.37912 -15.21145 -14.83128 -14.53474 -14.47516 -13.96115 -13.51455 -13.29045 -12.97082 -12.90570 -12.64709 -12.52124 -12.20671 -12.16587 -12.09860 -11.84985 -11.70781 -11.40548 -10.45148 -9.51240 -9.02692 -7.99819 -5.28658 1.42252 1.45465 1.55072 1.82026 2.21726 2.54289 3.32403 3.68957 3.74507 3.98142 4.12655 4.14890 4.24648 4.35581 4.36733 4.70119 4.72756 4.76608 4.84749 4.90126 4.92157 5.16086 5.25060 5.29203 5.32893 5.47101 5.93227 6.19577 6.36466 7.28418 7.49610 7.95362 8.20281 9.23270 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.042028 B = 0.008614 C = 0.007955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.066307 B = 3249.854334 C = 3518.788193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 C -0.163 4.163 4 N -0.622 5.622 5 C 0.111 3.889 6 C -0.126 4.126 7 C 0.133 3.867 8 H 0.083 0.917 9 N -0.712 5.712 10 C -0.236 4.236 11 H 0.067 0.933 12 C -0.073 4.073 13 N -0.967 5.967 14 Si 0.972 3.028 15 H -0.270 1.270 16 H -0.296 1.296 17 H -0.283 1.283 18 C 0.481 3.519 19 O -0.574 6.574 20 H 0.029 0.971 21 H 0.088 0.912 22 H 0.063 0.937 23 H 0.126 0.874 24 H 0.090 0.910 25 H 0.053 0.947 26 H 0.025 0.975 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.378 0.622 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.540 -7.913 16.003 18.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.044 3.956 3 C -0.221 4.221 4 N -0.358 5.358 5 C -0.011 4.011 6 C -0.165 4.165 7 C 0.020 3.980 8 H 0.100 0.900 9 N -0.351 5.351 10 C -0.368 4.368 11 H 0.085 0.915 12 C -0.265 4.265 13 N -0.617 5.617 14 Si 0.801 3.199 15 H -0.195 1.195 16 H -0.224 1.224 17 H -0.209 1.209 18 C 0.267 3.733 19 O -0.452 6.452 20 H 0.048 0.952 21 H 0.106 0.894 22 H 0.083 0.917 23 H 0.143 0.857 24 H 0.108 0.892 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.120 0.880 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.133 0.867 31 H 0.211 0.789 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.061 -7.389 15.774 17.686 hybrid contribution -0.121 0.939 -1.158 1.496 sum -3.182 -6.450 14.616 16.289 Atomic orbital electron populations 1.22119 0.95230 1.02356 1.02173 1.21135 0.94314 0.92730 0.87420 1.22136 1.01025 0.96961 1.02010 1.48734 1.51878 1.29861 1.05319 1.22273 0.94295 0.87097 0.97424 1.22859 0.97527 1.02472 0.93622 1.21304 0.96141 0.92331 0.88202 0.89973 1.42363 1.12859 1.64768 1.15157 1.19558 0.95719 1.27670 0.93855 0.91466 1.25544 0.97410 1.01345 1.02204 1.69799 1.12615 1.44401 1.34913 0.85092 0.78146 0.77040 0.79605 1.19510 1.22387 1.20906 1.22947 0.79357 0.85576 0.85444 1.90565 1.40842 1.31242 1.82521 0.95210 0.89368 0.91750 0.85665 0.89169 0.92772 0.95595 0.87957 0.88470 0.90793 0.86742 0.78899 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.99 9.19 71.98 0.66 -3.33 16 2 C 0.15 3.57 3.47 44.99 0.16 3.72 16 3 C -0.16 -4.52 9.20 71.98 0.66 -3.85 16 4 N -0.62 -18.54 2.83 -794.06 -2.25 -20.79 16 5 C 0.11 2.30 7.30 86.83 0.63 2.93 16 6 C -0.13 -3.45 6.87 31.65 0.22 -3.23 16 7 C 0.13 5.44 3.57 44.99 0.16 5.60 16 8 H 0.08 3.32 8.09 -2.39 -0.02 3.31 16 9 N -0.71 -37.68 5.19 -322.96 -1.67 -39.35 16 10 C -0.24 -14.02 9.96 84.04 0.84 -13.19 16 11 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 12 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 13 N -0.97 -61.07 13.06 21.65 0.28 -60.78 16 14 Si 0.97 48.88 29.55 68.60 2.03 50.91 16 15 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 16 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 17 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 18 C 0.48 20.31 7.06 87.90 0.62 20.93 16 19 O -0.57 -30.21 15.11 -3.03 -0.05 -30.26 16 20 H 0.03 1.00 6.75 -2.39 -0.02 0.98 16 21 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 23 H 0.13 1.98 8.07 -2.39 -0.02 1.96 16 24 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.02 0.95 6.82 -2.39 -0.02 0.94 16 27 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 2.16 7.82 -2.39 -0.02 2.14 16 30 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.38 21.02 7.62 -92.71 -0.71 20.32 16 32 H 0.25 15.36 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -77.45 267.49 3.15 -74.30 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.40 Total: 20.33 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 4.42 Total: 5.65 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -3.64 Total: -120.92 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.05 Total: -30.26 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.03 Total: 50.91 kcal Total: -77.45 3.15 -74.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642824521.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.069 kcal (2) G-P(sol) polarization free energy of solvation -77.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds