Wall clock time and date at job start Mon Mar 30 2020 02:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47278 * 2 1 4 4 H 1.08997 * 109.90478 * 55.77695 * 3 2 1 5 5 N 1.47903 * 109.91721 * 294.67328 * 3 2 1 6 6 C 1.48534 * 105.82015 * 215.31764 * 5 3 2 7 7 C 1.54931 * 103.22700 * 39.20673 * 6 5 3 8 8 C 1.53997 * 109.91826 * 177.08491 * 3 2 1 9 9 H 1.09002 * 110.30953 * 239.49426 * 8 3 2 10 10 C 1.50703 * 110.30658 * 1.66315 * 8 3 2 11 11 O 1.21287 * 119.99983 * 86.52659 * 10 8 3 12 12 N 1.34777 * 119.99787 * 266.52168 * 10 8 3 13 13 C 1.37103 * 119.99786 * 180.02562 * 12 10 8 14 14 H 1.07996 * 119.99698 * 359.97438 * 13 12 10 15 15 C 1.38949 * 119.99492 * 180.02562 * 13 12 10 16 16 N 1.31402 * 120.00721 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99625 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46956 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46900 * 119.99832 * 17 15 13 20 20 H 1.48495 * 109.47228 * 240.00051 * 17 15 13 21 21 H 1.08996 * 109.47317 * 300.00047 * 1 2 3 22 22 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47181 * 60.00087 * 1 2 3 24 24 H 1.08996 * 109.46942 * 120.00337 * 2 1 3 25 25 H 1.09006 * 109.47202 * 239.99953 * 2 1 3 26 26 H 1.00894 * 110.99871 * 335.83424 * 5 3 2 27 27 H 1.09001 * 110.66362 * 157.64733 * 6 5 3 28 28 H 1.09005 * 110.66410 * 280.60887 * 6 5 3 29 29 H 1.09005 * 110.72460 * 80.94505 * 7 6 5 30 30 H 1.09003 * 110.72406 * 204.22792 * 7 6 5 31 31 H 0.96999 * 120.00190 * 359.97438 * 12 10 8 32 32 H 0.97003 * 120.00761 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6203 1.9845 0.8474 5 7 1.6607 2.1110 -1.2636 6 6 2.7864 3.0221 -1.5935 7 6 4.0374 2.1956 -1.2033 8 6 3.5782 1.4551 0.0736 9 1 3.9100 1.9919 0.9623 10 6 4.1129 0.0461 0.0821 11 8 4.3187 -0.5308 -0.9647 12 7 4.3625 -0.5728 1.2531 13 6 4.8495 -1.8544 1.2608 14 1 5.0327 -2.3681 0.3287 15 6 5.1064 -2.4926 2.4680 16 7 4.8821 -1.8682 3.6023 17 14 5.7692 -4.2391 2.4786 18 1 5.9334 -4.7147 1.0814 19 1 7.0844 -4.2651 3.1676 20 1 4.8174 -5.1255 3.1952 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.5137 1.4366 -1.9995 27 1 2.7948 3.2532 -2.6587 28 1 2.7269 3.9365 -1.0031 29 1 4.2916 1.4857 -1.9905 30 1 4.8808 2.8513 -0.9867 31 1 4.1984 -0.1113 2.0903 32 1 5.0618 -2.3136 4.4450 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700684055.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:00 Heat of formation + Delta-G solvation = -50.880034 kcal Electronic energy + Delta-G solvation = -14687.108549 eV Core-core repulsion = 12260.756205 eV Total energy + Delta-G solvation = -2426.352344 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.61098 -36.92580 -33.94959 -32.83554 -31.27569 -29.72831 -27.67207 -24.95884 -22.80496 -21.18314 -20.92492 -18.49850 -17.66871 -16.03499 -15.56822 -15.09661 -14.52148 -14.46842 -13.85837 -13.43246 -12.90262 -12.72665 -12.41057 -11.85200 -11.69713 -11.30821 -11.15288 -11.08935 -10.82621 -10.51194 -10.36292 -10.33286 -10.23208 -10.13588 -9.51978 -8.56171 -8.20723 -7.97938 -6.43601 -3.84533 3.14215 3.25228 3.32140 3.85731 4.15276 4.49800 4.85379 5.05669 5.22643 5.30857 5.41198 5.57096 5.62802 5.71730 5.86483 5.93159 6.01638 6.12347 6.18218 6.33923 6.41018 6.47605 6.61777 6.63186 6.84690 7.05610 7.53201 7.59927 8.04201 8.58604 9.15497 9.53066 10.03923 10.73879 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.041951 B = 0.008781 C = 0.008097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.281656 B = 3187.824978 C = 3457.233490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.138 4.138 3 C 0.091 3.909 4 H 0.084 0.916 5 N -0.668 5.668 6 C 0.042 3.958 7 C -0.142 4.142 8 C -0.132 4.132 9 H 0.081 0.919 10 C 0.456 3.544 11 O -0.597 6.597 12 N -0.561 5.561 13 C -0.300 4.300 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.899 5.899 17 Si 0.927 3.073 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.281 1.281 21 H 0.049 0.951 22 H 0.048 0.952 23 H 0.055 0.945 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.337 0.663 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.392 0.608 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.997 6.754 -4.183 9.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C -0.019 4.019 4 H 0.102 0.898 5 N -0.295 5.295 6 C -0.087 4.087 7 C -0.181 4.181 8 C -0.155 4.155 9 H 0.099 0.901 10 C 0.242 3.758 11 O -0.483 6.483 12 N -0.195 5.195 13 C -0.430 4.430 14 H 0.120 0.880 15 C -0.179 4.179 16 N -0.541 5.541 17 Si 0.755 3.245 18 H -0.193 1.193 19 H -0.207 1.207 20 H -0.207 1.207 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.092 0.908 26 H 0.153 0.847 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.226 0.774 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.303 6.788 -4.385 9.666 hybrid contribution 1.095 -1.219 0.504 1.715 sum -4.208 5.569 -3.881 7.986 Atomic orbital electron populations 1.21692 0.95878 1.00844 1.01548 1.21978 0.95781 0.95463 1.04359 1.22251 0.91460 0.94701 0.93517 0.89800 1.62956 1.39990 1.21006 1.05593 1.23079 0.88741 0.96555 1.00372 1.23041 0.98423 0.98873 0.97775 1.22511 0.97188 0.96221 0.99615 0.90099 1.19558 0.83935 0.87691 0.84636 1.90487 1.58509 1.67481 1.31820 1.41971 1.56553 1.14369 1.06639 1.19751 1.39207 0.89707 0.94335 0.87957 1.25258 0.97708 1.00187 0.94709 1.69615 1.48665 1.38208 0.97569 0.85830 0.78329 0.81821 0.78555 1.19255 1.20746 1.20712 0.93166 0.93328 0.92611 0.90216 0.90839 0.84661 0.91132 0.90648 0.89546 0.91450 0.77430 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.81 37.16 0.36 -1.74 16 2 C -0.14 -2.46 4.11 -26.73 -0.11 -2.57 16 3 C 0.09 1.50 3.40 -66.64 -0.23 1.28 16 4 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 5 N -0.67 -9.88 6.91 -103.13 -0.71 -10.60 16 6 C 0.04 0.57 7.55 -1.90 -0.01 0.56 16 7 C -0.14 -2.30 6.55 -24.87 -0.16 -2.46 16 8 C -0.13 -2.41 3.38 -90.41 -0.31 -2.71 16 9 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 10 C 0.46 10.64 4.70 -10.98 -0.05 10.59 16 11 O -0.60 -15.90 14.59 5.55 0.08 -15.82 16 12 N -0.56 -14.12 4.75 -10.96 -0.05 -14.18 16 13 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 14 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 15 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 16 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 17 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.05 0.76 7.71 -51.92 -0.40 0.36 16 24 H 0.08 1.63 7.00 -51.93 -0.36 1.26 16 25 H 0.07 1.48 7.02 -51.93 -0.36 1.11 16 26 H 0.34 5.02 8.26 -39.30 -0.32 4.69 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.09 1.61 6.89 -51.93 -0.36 1.25 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 262.07 15.07 3.95 3.95 Total: -1.00 -29.30 262.07 -6.38 -35.68 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -4.60 Total: 13.64 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -0.75 Total: -5.00 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.04 Total: -48.46 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: 0.08 Total: -15.82 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.30 -6.38 -35.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700684055.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.199 kcal (2) G-P(sol) polarization free energy of solvation -29.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds