Wall clock time and date at job start Mon Mar 30 2020 02:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47278 * 2 1 4 4 H 1.08997 * 109.90478 * 55.77695 * 3 2 1 5 5 N 1.47903 * 109.91721 * 294.67328 * 3 2 1 6 6 C 1.48534 * 105.82015 * 215.31764 * 5 3 2 7 7 C 1.54931 * 103.22700 * 39.20673 * 6 5 3 8 8 C 1.53997 * 109.91826 * 177.08491 * 3 2 1 9 9 H 1.09002 * 110.30953 * 239.49426 * 8 3 2 10 10 C 1.50703 * 110.30658 * 1.66315 * 8 3 2 11 11 O 1.21287 * 119.99983 * 86.52659 * 10 8 3 12 12 N 1.34777 * 119.99787 * 266.52168 * 10 8 3 13 13 C 1.37103 * 119.99786 * 180.02562 * 12 10 8 14 14 H 1.07996 * 119.99698 * 359.97438 * 13 12 10 15 15 C 1.38949 * 119.99492 * 180.02562 * 13 12 10 16 16 N 1.31402 * 120.00721 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99625 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46956 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46900 * 119.99832 * 17 15 13 20 20 H 1.48495 * 109.47228 * 240.00051 * 17 15 13 21 21 H 1.08996 * 109.47317 * 300.00047 * 1 2 3 22 22 H 1.09002 * 109.47342 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47181 * 60.00087 * 1 2 3 24 24 H 1.08996 * 109.46942 * 120.00337 * 2 1 3 25 25 H 1.09006 * 109.47202 * 239.99953 * 2 1 3 26 26 H 1.00894 * 110.99871 * 335.83424 * 5 3 2 27 27 H 1.09001 * 110.66362 * 157.64733 * 6 5 3 28 28 H 1.09005 * 110.66410 * 280.60887 * 6 5 3 29 29 H 1.09005 * 110.72460 * 80.94505 * 7 6 5 30 30 H 1.09003 * 110.72406 * 204.22792 * 7 6 5 31 31 H 0.96999 * 120.00190 * 359.97438 * 12 10 8 32 32 H 0.97003 * 120.00761 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6203 1.9845 0.8474 5 7 1.6607 2.1110 -1.2636 6 6 2.7864 3.0221 -1.5935 7 6 4.0374 2.1956 -1.2033 8 6 3.5782 1.4551 0.0736 9 1 3.9100 1.9919 0.9623 10 6 4.1129 0.0461 0.0821 11 8 4.3187 -0.5308 -0.9647 12 7 4.3625 -0.5728 1.2531 13 6 4.8495 -1.8544 1.2608 14 1 5.0327 -2.3681 0.3287 15 6 5.1064 -2.4926 2.4680 16 7 4.8821 -1.8682 3.6023 17 14 5.7692 -4.2391 2.4786 18 1 5.9334 -4.7147 1.0814 19 1 7.0844 -4.2651 3.1676 20 1 4.8174 -5.1255 3.1952 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.5137 1.4366 -1.9995 27 1 2.7948 3.2532 -2.6587 28 1 2.7269 3.9365 -1.0031 29 1 4.2916 1.4857 -1.9905 30 1 4.8808 2.8513 -0.9867 31 1 4.1984 -0.1113 2.0903 32 1 5.0618 -2.3136 4.4450 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700684055.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:59 Heat of formation + Delta-G solvation = -72.398512 kcal Electronic energy + Delta-G solvation = -14688.041661 eV Core-core repulsion = 12260.756205 eV Total energy + Delta-G solvation = -2427.285455 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.20726 -38.59224 -35.97896 -34.16423 -33.28962 -31.17760 -28.94941 -26.93543 -24.15014 -22.73374 -22.25800 -20.36492 -19.56006 -17.74438 -16.96453 -16.63762 -16.31059 -15.83864 -15.71688 -15.10619 -14.52457 -14.15144 -13.76307 -13.59360 -13.23331 -12.93351 -12.59521 -12.56118 -12.40667 -12.14651 -12.12540 -11.84022 -11.74773 -11.52737 -11.43760 -10.35931 -10.02233 -9.58710 -8.48911 -5.97665 1.33407 1.38856 1.52703 2.01421 2.27090 3.09661 3.16324 3.33217 3.74898 3.88514 4.03109 4.23990 4.27934 4.44585 4.57285 4.59670 4.63620 4.83351 4.89854 4.98297 5.06274 5.17982 5.29353 5.30561 5.38552 5.44731 5.80347 5.97733 6.37520 6.56194 7.09744 7.53867 8.08576 8.68528 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.041951 B = 0.008781 C = 0.008097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.281656 B = 3187.824978 C = 3457.233490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.132 4.132 3 C 0.098 3.902 4 H 0.102 0.898 5 N -0.660 5.660 6 C 0.051 3.949 7 C -0.141 4.141 8 C -0.132 4.132 9 H 0.097 0.903 10 C 0.458 3.542 11 O -0.634 6.634 12 N -0.570 5.570 13 C -0.332 4.332 14 H 0.077 0.923 15 C -0.012 4.012 16 N -0.919 5.919 17 Si 0.990 3.010 18 H -0.274 1.274 19 H -0.270 1.270 20 H -0.270 1.270 21 H 0.063 0.937 22 H 0.048 0.952 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.336 0.664 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.394 0.606 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.683 7.923 -3.989 10.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.171 4.171 3 C -0.012 4.012 4 H 0.120 0.880 5 N -0.288 5.288 6 C -0.078 4.078 7 C -0.180 4.180 8 C -0.155 4.155 9 H 0.115 0.885 10 C 0.247 3.753 11 O -0.522 6.522 12 N -0.205 5.205 13 C -0.462 4.462 14 H 0.095 0.905 15 C -0.212 4.212 16 N -0.559 5.559 17 Si 0.814 3.186 18 H -0.199 1.199 19 H -0.196 1.196 20 H -0.195 1.195 21 H 0.082 0.918 22 H 0.067 0.933 23 H 0.089 0.911 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.152 0.848 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.228 0.772 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.999 7.981 -4.182 10.825 hybrid contribution 1.311 -1.557 0.404 2.075 sum -4.688 6.424 -3.778 8.804 Atomic orbital electron populations 1.21627 0.93218 1.01368 1.02867 1.21854 0.98087 0.95927 1.01213 1.22234 0.89853 0.94018 0.95133 0.88006 1.63008 1.40238 1.20677 1.04834 1.23179 0.86193 0.96236 1.02235 1.23051 1.00622 0.98678 0.95656 1.22616 0.98634 0.92704 1.01592 0.88490 1.20461 0.82119 0.89368 0.83399 1.90458 1.59655 1.69074 1.33039 1.42016 1.57212 1.13943 1.07306 1.19667 1.41377 0.91224 0.93915 0.90533 1.26015 0.97375 1.03753 0.94022 1.69673 1.48697 1.39587 0.97982 0.84913 0.78225 0.77243 0.78223 1.19896 1.19553 1.19526 0.91837 0.93316 0.91149 0.93403 0.93929 0.84811 0.88939 0.88459 0.92441 0.89730 0.77207 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 9.81 71.98 0.71 -3.05 16 2 C -0.13 -4.74 4.11 30.59 0.13 -4.62 16 3 C 0.10 3.09 3.40 45.06 0.15 3.24 16 4 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 5 N -0.66 -17.86 6.91 -480.20 -3.32 -21.17 16 6 C 0.05 1.20 7.55 86.65 0.65 1.86 16 7 C -0.14 -4.34 6.55 31.80 0.21 -4.13 16 8 C -0.13 -4.71 3.38 -10.66 -0.04 -4.75 16 9 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 10 C 0.46 21.95 4.70 87.66 0.41 22.37 16 11 O -0.63 -35.13 14.59 -3.05 -0.04 -35.18 16 12 N -0.57 -29.57 4.75 -306.98 -1.46 -31.03 16 13 C -0.33 -19.02 9.68 84.04 0.81 -18.20 16 14 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 15 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 16 N -0.92 -49.88 13.05 21.66 0.28 -49.60 16 17 Si 0.99 43.29 29.55 68.60 2.03 45.31 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 21 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 22 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.07 1.78 7.71 -2.38 -0.02 1.76 16 24 H 0.05 2.00 7.00 -2.39 -0.02 1.99 16 25 H 0.04 1.76 7.02 -2.38 -0.02 1.75 16 26 H 0.34 9.40 8.26 -89.70 -0.74 8.66 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.06 2.13 6.89 -2.38 -0.02 2.11 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.39 19.76 7.90 -92.71 -0.73 19.03 16 32 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -64.11 262.07 0.65 -63.46 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: -0.35 Total: 35.65 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 3.50 Total: -7.45 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -4.49 Total: -101.80 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -0.04 Total: -35.18 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -64.11 0.65 -63.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700684055.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.937 kcal (2) G-P(sol) polarization free energy of solvation -64.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds