Wall clock time and date at job start Mon Mar 30 2020 02:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46497 * 120.00243 * 2 1 4 4 C 1.50708 * 109.47141 * 270.00210 * 3 2 1 5 5 H 1.07991 * 119.99789 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00008 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 3 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 C 1.34782 * 120.00018 * 180.02562 * 2 1 3 13 13 O 1.21287 * 119.99886 * 180.02562 * 12 2 1 14 14 C 1.50692 * 120.00168 * 359.97438 * 12 2 1 15 15 H 1.09003 * 110.36784 * 42.35257 * 14 12 2 16 16 C 1.54382 * 110.41053 * 280.00045 * 14 12 2 17 17 C 1.54260 * 105.05956 * 217.36339 * 16 14 12 18 18 C 1.54383 * 105.06267 * 0.02562 * 17 16 14 19 19 N 1.48559 * 110.41336 * 164.82543 * 14 12 2 20 20 H 1.09003 * 109.47176 * 90.00179 * 1 2 3 21 21 H 1.09010 * 109.46973 * 209.99980 * 1 2 3 22 22 H 1.09002 * 109.47083 * 329.99647 * 1 2 3 23 23 H 1.08994 * 109.47995 * 150.00185 * 3 2 1 24 24 H 1.09000 * 109.47072 * 30.00143 * 3 2 1 25 25 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 26 26 H 1.08990 * 110.32664 * 336.26192 * 16 14 12 27 27 H 1.09002 * 110.32289 * 98.47130 * 16 14 12 28 28 H 1.09000 * 110.31947 * 118.89532 * 17 16 14 29 29 H 1.08995 * 110.32922 * 240.99985 * 17 16 14 30 30 H 1.08994 * 110.41028 * 142.62432 * 18 17 16 31 31 H 1.08996 * 110.40996 * 265.07498 * 18 17 16 32 32 H 1.00898 * 110.99942 * 277.82092 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0973 1.0962 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.3447 3.2579 -2.9127 8 14 3.7330 3.9291 -0.2530 9 1 2.6812 4.9075 0.1237 10 1 4.9606 4.6562 -0.6648 11 1 4.0398 3.0595 0.9110 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0001 14 6 1.3854 -2.4723 -0.0005 15 1 0.5415 -2.4231 -0.6886 16 6 0.8992 -2.8133 1.4245 17 6 1.0512 -4.3437 1.5444 18 6 1.6171 -4.7986 0.1820 19 7 2.2900 -3.5928 -0.3656 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3633 -0.8901 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 3.1499 1.1385 0.5137 24 1 1.6084 2.0283 0.5139 25 1 3.8216 4.0837 -3.0899 26 1 1.5203 -2.3119 2.1666 27 1 -0.1451 -2.5258 1.5471 28 1 1.7471 -4.5933 2.3454 29 1 0.0819 -4.8073 1.7277 30 1 2.3361 -5.6061 0.3195 31 1 0.8098 -5.1154 -0.4783 32 1 2.3957 -3.6607 -1.3667 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833471.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:31 Heat of formation + Delta-G solvation = -53.300084 kcal Electronic energy + Delta-G solvation = -14456.550679 eV Core-core repulsion = 12030.093394 eV Total energy + Delta-G solvation = -2426.457285 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.03723 -38.53396 -36.58660 -34.71175 -31.41637 -31.19753 -29.48557 -27.36383 -24.97545 -22.74354 -21.79048 -19.95534 -19.16002 -18.17889 -17.72646 -17.02521 -16.40006 -15.73096 -15.32220 -14.67042 -14.57732 -14.08444 -13.90858 -13.73680 -13.48979 -13.28538 -13.05849 -12.79325 -12.49953 -12.38946 -12.11599 -12.04610 -11.78412 -11.51504 -10.83389 -10.60307 -9.50712 -9.39500 -8.35786 -6.41063 1.30502 1.35833 1.46955 1.78006 2.25759 2.30613 2.98153 3.33217 3.61271 3.67261 4.01566 4.09666 4.25511 4.37629 4.58899 4.65228 4.72596 4.73310 4.90123 4.94167 4.95216 5.01033 5.12133 5.23352 5.44625 5.59890 5.76949 6.22365 6.27031 6.59626 6.72126 7.20273 7.46584 8.81466 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.053930 B = 0.007707 C = 0.007528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.068738 B = 3632.419296 C = 3718.604929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.610 5.610 3 C 0.224 3.776 4 C -0.539 4.539 5 H 0.026 0.974 6 C 0.009 3.991 7 N -0.946 5.946 8 Si 0.951 3.049 9 H -0.248 1.248 10 H -0.281 1.281 11 H -0.257 1.257 12 C 0.502 3.498 13 O -0.582 6.582 14 C 0.056 3.944 15 H 0.090 0.910 16 C -0.110 4.110 17 C -0.117 4.117 18 C 0.036 3.964 19 N -0.674 5.674 20 H 0.048 0.952 21 H 0.100 0.900 22 H 0.083 0.917 23 H 0.016 0.984 24 H 0.052 0.948 25 H 0.269 0.731 26 H 0.054 0.946 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.881 -12.905 10.341 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.342 5.342 3 C 0.101 3.899 4 C -0.577 4.577 5 H 0.044 0.956 6 C -0.189 4.189 7 N -0.586 5.586 8 Si 0.773 3.227 9 H -0.171 1.171 10 H -0.206 1.206 11 H -0.182 1.182 12 C 0.290 3.710 13 O -0.461 6.461 14 C -0.057 4.057 15 H 0.107 0.893 16 C -0.148 4.148 17 C -0.155 4.155 18 C -0.092 4.092 19 N -0.304 5.304 20 H 0.067 0.933 21 H 0.119 0.881 22 H 0.102 0.898 23 H 0.034 0.966 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.128 0.872 28 H 0.088 0.912 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.678 -12.672 10.771 19.242 hybrid contribution 0.037 0.755 -0.961 1.223 sum -9.641 -11.916 9.809 18.198 Atomic orbital electron populations 1.22018 0.77700 1.04637 1.02165 1.47960 1.08414 1.05828 1.71974 1.19339 0.92733 0.82560 0.95251 1.21574 1.36957 1.06772 0.92417 0.95610 1.25896 0.95193 0.98984 0.98790 1.70053 1.42749 1.24482 1.21329 0.85670 0.78910 0.78914 0.79219 1.17148 1.20638 1.18163 1.21214 0.87840 0.86158 0.75820 1.90623 1.16574 1.87850 1.51024 1.22461 0.93742 0.88793 1.00719 0.89281 1.22315 1.02409 0.97796 0.92267 1.22326 1.02578 0.93550 0.97014 1.23048 0.97704 0.92318 0.96153 1.63276 1.45772 1.02575 1.18788 0.93330 0.88122 0.89847 0.96567 0.93061 0.92214 0.92738 0.87234 0.91214 0.87831 0.89425 0.91977 0.84406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.21 10.00 127.77 1.28 3.48 16 2 N -0.61 -25.66 2.86 -851.13 -2.43 -28.09 16 3 C 0.22 11.31 4.27 85.64 0.37 11.68 16 4 C -0.54 -32.78 9.94 25.60 0.25 -32.52 16 5 H 0.03 1.75 8.06 -2.92 -0.02 1.72 16 6 C 0.01 0.56 5.47 84.65 0.46 1.02 16 7 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 8 Si 0.95 45.40 27.47 68.60 1.88 47.29 16 9 H -0.25 -10.68 7.11 99.48 0.71 -9.98 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 11 H -0.26 -11.97 6.54 99.48 0.65 -11.32 16 12 C 0.50 21.63 6.86 87.65 0.60 22.23 16 13 O -0.58 -31.77 16.14 -3.05 -0.05 -31.82 16 14 C 0.06 1.66 2.60 44.31 0.12 1.78 16 15 H 0.09 2.23 7.39 -2.39 -0.02 2.21 16 16 C -0.11 -2.39 5.93 31.49 0.19 -2.20 16 17 C -0.12 -1.99 7.00 31.49 0.22 -1.77 16 18 C 0.04 0.70 7.47 86.45 0.65 1.35 16 19 N -0.67 -20.10 6.86 -482.84 -3.31 -23.41 16 20 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.10 2.01 5.11 -2.38 -0.01 2.00 16 22 H 0.08 2.15 7.89 -2.39 -0.02 2.13 16 23 H 0.02 0.90 6.48 -2.39 -0.02 0.88 16 24 H 0.05 2.31 7.32 -2.39 -0.02 2.29 16 25 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 26 H 0.05 1.44 7.85 -2.39 -0.02 1.42 16 27 H 0.11 1.61 7.01 -2.39 -0.02 1.60 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.34 9.91 8.92 -89.70 -0.80 9.11 16 Total: -1.00 -81.42 262.63 0.78 -80.64 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.26 Total: 11.07 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 4.13 Total: 5.04 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -5.44 Total: -112.22 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.05 Total: -31.82 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.29 kcal Total: -81.42 0.78 -80.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833471.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.341 kcal (2) G-P(sol) polarization free energy of solvation -81.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds