Wall clock time and date at job start Mon Mar 30 2020 02:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46512 * 1 3 3 C 1.46491 * 119.99962 * 2 1 4 4 C 1.50702 * 109.46957 * 269.99883 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.34774 * 119.99637 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99656 * 179.97438 * 12 2 1 14 14 C 1.50708 * 120.00400 * 359.97438 * 12 2 1 15 15 H 1.08998 * 110.32747 * 320.80145 * 14 12 2 16 16 C 1.54909 * 110.36953 * 83.17061 * 14 12 2 17 17 C 1.55142 * 101.64845 * 155.90176 * 16 14 12 18 18 C 1.54319 * 103.02130 * 324.34663 * 17 16 14 19 19 N 1.47451 * 107.23197 * 22.28213 * 18 17 16 20 20 H 1.08995 * 109.46885 * 89.99959 * 1 2 3 21 21 H 1.09002 * 109.46695 * 210.00109 * 1 2 3 22 22 H 1.09003 * 109.46868 * 329.99737 * 1 2 3 23 23 H 1.09004 * 109.47166 * 150.00149 * 3 2 1 24 24 H 1.08994 * 109.47507 * 29.99855 * 3 2 1 25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 26 26 H 1.08995 * 110.99226 * 273.98896 * 16 14 12 27 27 H 1.08996 * 110.99040 * 37.81386 * 16 14 12 28 28 H 1.08994 * 110.70913 * 205.96786 * 17 16 14 29 29 H 1.08998 * 110.70608 * 82.72988 * 17 16 14 30 30 H 1.08998 * 109.88950 * 262.87787 * 18 17 16 31 31 H 1.09004 * 109.89485 * 141.68678 * 18 17 16 32 32 H 1.00903 * 110.99867 * 123.25936 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7036 -1.4208 5 1 2.0975 1.0961 -2.2418 6 6 3.1215 2.8805 -1.6728 7 7 3.5489 3.6206 -0.6732 8 14 3.4261 3.4235 -3.4340 9 1 2.2918 4.2631 -3.8963 10 1 4.6834 4.2111 -3.4987 11 1 3.5452 2.2282 -4.3070 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4724 -0.0005 15 1 0.5103 -2.4044 0.6458 16 6 0.9657 -2.8527 -1.4424 17 6 0.8140 -4.3925 -1.3286 18 6 1.9361 -4.7805 -0.3428 19 7 2.2662 -3.5751 0.4397 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5139 23 1 3.1500 1.1383 0.5138 24 1 1.6086 2.0283 0.5138 25 1 4.0226 4.4484 -0.8505 26 1 0.0177 -2.3857 -1.7091 27 1 1.7443 -2.5889 -2.1581 28 1 0.9705 -4.8678 -2.2969 29 1 -0.1631 -4.6546 -0.9229 30 1 2.8142 -5.1167 -0.8941 31 1 1.5883 -5.5708 0.3226 32 1 2.1638 -3.7469 1.4287 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833473.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:34 Heat of formation + Delta-G solvation = -55.814978 kcal Electronic energy + Delta-G solvation = -14464.763693 eV Core-core repulsion = 12038.197354 eV Total energy + Delta-G solvation = -2426.566339 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.94802 -38.53525 -36.50131 -34.72175 -31.19857 -30.98918 -29.21095 -27.27734 -25.26749 -22.80534 -21.97223 -19.80287 -18.68417 -18.34729 -17.60387 -16.92389 -16.19995 -15.87030 -15.52953 -14.47206 -14.44683 -14.04404 -13.86662 -13.51715 -13.43582 -13.15346 -12.89736 -12.79477 -12.55752 -12.45718 -12.19962 -12.10960 -11.73520 -11.67537 -10.64682 -10.54122 -9.39246 -9.28225 -8.22832 -6.37950 1.34793 1.38557 1.48837 1.88024 2.27166 2.42407 3.05978 3.34099 3.60929 3.77507 3.94587 4.09424 4.20713 4.47853 4.54902 4.70886 4.76586 4.88792 4.92477 4.97368 5.02953 5.08802 5.21323 5.31719 5.56528 5.80563 5.91794 6.06462 6.46020 6.70554 6.85166 7.28663 7.57898 8.84232 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.043033 B = 0.007948 C = 0.007673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.507605 B = 3521.888056 C = 3648.283113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.613 5.613 3 C 0.259 3.741 4 C -0.543 4.543 5 H 0.052 0.948 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.969 3.031 9 H -0.260 1.260 10 H -0.280 1.280 11 H -0.274 1.274 12 C 0.498 3.502 13 O -0.586 6.586 14 C 0.070 3.930 15 H 0.106 0.894 16 C -0.117 4.117 17 C -0.128 4.128 18 C 0.049 3.951 19 N -0.694 5.694 20 H 0.059 0.941 21 H 0.098 0.902 22 H 0.070 0.930 23 H -0.007 1.007 24 H 0.025 0.975 25 H 0.267 0.733 26 H 0.102 0.898 27 H 0.044 0.956 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.734 -14.471 0.057 18.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.345 5.345 3 C 0.137 3.863 4 C -0.581 4.581 5 H 0.070 0.930 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.185 1.185 10 H -0.205 1.205 11 H -0.199 1.199 12 C 0.285 3.715 13 O -0.465 6.465 14 C -0.042 4.042 15 H 0.123 0.877 16 C -0.156 4.156 17 C -0.166 4.166 18 C -0.080 4.080 19 N -0.326 5.326 20 H 0.077 0.923 21 H 0.116 0.884 22 H 0.089 0.911 23 H 0.011 0.989 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.121 0.879 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.463 -14.118 -0.272 17.574 hybrid contribution -0.044 0.637 -0.222 0.676 sum -10.507 -13.481 -0.494 17.099 Atomic orbital electron populations 1.21965 0.77977 1.03859 1.02469 1.48206 1.08353 1.06230 1.71730 1.18751 0.91046 0.80487 0.95984 1.21709 1.36991 1.06368 0.93070 0.93019 1.25899 0.94853 0.96436 1.02155 1.70058 1.39090 1.14708 1.33088 0.85394 0.78209 0.78175 0.78908 1.18496 1.20539 1.19905 1.21345 0.87900 0.86207 0.76007 1.90612 1.16843 1.87866 1.51212 1.22325 0.93677 0.88581 0.99655 0.87663 1.22647 1.01929 0.97973 0.93012 1.22805 0.99758 0.93162 1.00892 1.22675 0.97854 0.91215 0.96221 1.61076 1.56627 1.05407 1.09509 0.92256 0.88366 0.91088 0.98879 0.95707 0.92371 0.87923 0.93723 0.89376 0.88266 0.92122 0.89893 0.83246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.39 10.25 127.76 1.31 3.70 16 2 N -0.61 -27.16 2.86 -851.12 -2.43 -29.59 16 3 C 0.26 14.61 5.20 85.64 0.45 15.05 16 4 C -0.54 -32.51 9.39 25.60 0.24 -32.27 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 6 C 0.01 0.31 5.46 84.66 0.46 0.78 16 7 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 8 Si 0.97 46.09 29.54 68.60 2.03 48.12 16 9 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 12 C 0.50 22.21 6.96 87.66 0.61 22.82 16 13 O -0.59 -33.40 16.17 -3.03 -0.05 -33.45 16 14 C 0.07 2.10 2.87 44.64 0.13 2.23 16 15 H 0.11 2.34 6.32 -2.39 -0.02 2.32 16 16 C -0.12 -3.00 6.41 31.98 0.21 -2.79 16 17 C -0.13 -2.25 6.94 31.78 0.22 -2.03 16 18 C 0.05 1.02 7.58 86.65 0.66 1.67 16 19 N -0.69 -20.20 6.64 -486.25 -3.23 -23.42 16 20 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 21 H 0.10 2.06 5.95 -2.39 -0.01 2.04 16 22 H 0.07 2.08 7.89 -2.39 -0.02 2.06 16 23 H -0.01 -0.45 7.42 -2.38 -0.02 -0.47 16 24 H 0.02 1.40 7.89 -2.39 -0.02 1.38 16 25 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 26 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.04 1.48 8.05 -2.39 -0.02 1.46 16 28 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.35 8.57 8.91 -89.69 -0.80 7.77 16 Total: -1.00 -79.98 268.29 1.19 -78.79 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.31 Total: 7.92 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 4.28 Total: 9.16 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -5.38 Total: -110.54 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.05 Total: -33.45 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -79.98 1.19 -78.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833473.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.978 kcal (2) G-P(sol) polarization free energy of solvation -79.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds