Wall clock time and date at job start Mon Mar 30 2020 02:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46891 * 111.00339 * 2 1 4 4 C 1.50700 * 109.47234 * 180.02562 * 3 2 1 5 5 O 1.21276 * 119.99908 * 5.03148 * 4 3 2 6 6 N 1.34776 * 120.00204 * 185.02697 * 4 3 2 7 7 C 1.46493 * 120.00258 * 184.79325 * 6 4 3 8 8 C 1.50701 * 109.47109 * 270.27541 * 7 6 4 9 9 H 1.07997 * 119.99827 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00121 * 179.97438 * 8 7 6 11 11 N 1.31508 * 120.00084 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99791 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47233 * 0.02562 * 12 10 8 14 14 H 1.48495 * 109.46803 * 119.99934 * 12 10 8 15 15 H 1.48502 * 109.46900 * 240.00019 * 12 10 8 16 16 C 1.46501 * 120.00079 * 5.06263 * 6 4 3 17 17 C 1.52993 * 117.50416 * 182.73645 * 16 6 4 18 18 C 1.53005 * 117.49664 * 114.07350 * 16 6 4 19 19 H 1.08995 * 109.47252 * 179.97438 * 1 2 3 20 20 H 1.09007 * 109.46936 * 299.99763 * 1 2 3 21 21 H 1.08993 * 109.47067 * 59.99291 * 1 2 3 22 22 H 1.00903 * 110.99483 * 123.95771 * 2 1 3 23 23 H 1.09005 * 109.47160 * 60.00174 * 3 2 1 24 24 H 1.08997 * 109.47305 * 300.00516 * 3 2 1 25 25 H 1.09004 * 109.47219 * 30.26762 * 7 6 4 26 26 H 1.09000 * 109.47414 * 150.27301 * 7 6 4 27 27 H 0.97000 * 119.99973 * 180.02562 * 11 10 8 28 28 H 1.09001 * 115.55213 * 328.41165 * 16 6 4 29 29 H 1.09004 * 117.49905 * 0.02562 * 17 16 6 30 30 H 1.09000 * 117.50447 * 145.02527 * 17 16 6 31 31 H 1.09000 * 117.49746 * 214.98088 * 18 16 6 32 32 H 1.08998 * 117.49848 * 359.97438 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5020 1.3310 -0.0006 5 8 4.0801 0.2690 -0.0932 6 7 4.2068 2.4753 0.1015 7 6 5.6676 2.4478 -0.0045 8 6 6.2668 2.2455 1.3634 9 1 5.6237 2.1476 2.2255 10 6 7.6360 2.1853 1.5143 11 7 8.4191 2.3049 0.4645 12 14 8.3787 1.9352 3.2100 13 1 7.2915 1.8307 4.2161 14 1 9.1825 0.6866 3.2190 15 1 9.2525 3.0889 3.5427 16 6 3.5124 3.7459 0.3245 17 6 4.3622 5.0174 0.3675 18 6 3.7542 4.4588 1.6566 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 1.8305 -0.5262 0.7814 23 1 1.6461 1.8947 0.8900 24 1 1.6460 1.8947 -0.8899 25 1 5.9691 1.6290 -0.6579 26 1 6.0197 3.3923 -0.4193 27 1 9.3823 2.2622 0.5706 28 1 2.5167 3.8206 -0.1128 29 1 5.4380 4.9087 0.2295 30 1 3.9256 5.9287 -0.0411 31 1 2.9178 5.0028 2.0953 32 1 4.4295 3.9822 2.3671 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038099466.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:52 Heat of formation + Delta-G solvation = -0.557509 kcal Electronic energy + Delta-G solvation = -14411.175260 eV Core-core repulsion = 11987.005065 eV Total energy + Delta-G solvation = -2424.170196 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.21663 -36.83221 -35.20605 -33.13798 -31.95736 -28.79569 -26.69546 -23.86344 -22.62196 -21.97931 -21.41352 -18.28229 -16.99906 -16.42396 -15.82336 -15.29030 -14.66294 -14.23923 -13.89055 -13.60199 -13.53339 -12.72308 -12.40795 -11.82087 -11.77452 -11.56358 -11.34576 -11.00370 -10.92989 -10.51007 -10.40640 -10.08617 -10.02552 -9.44430 -8.87316 -8.42207 -8.29938 -7.50177 -6.03580 -4.07629 3.29634 3.35868 3.38407 3.42808 3.76130 4.37247 4.44595 4.49841 5.05008 5.28970 5.30172 5.32403 5.37945 5.43219 5.52807 5.57097 5.66485 5.83689 6.09202 6.12056 6.59862 6.75754 6.91419 7.15714 7.43697 7.47256 7.57140 7.93396 8.24152 8.45581 8.91891 9.13385 9.57103 11.04412 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.030673 B = 0.009374 C = 0.008205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.639927 B = 2986.280344 C = 3411.627125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.679 5.679 3 C 0.041 3.959 4 C 0.506 3.494 5 O -0.523 6.523 6 N -0.574 5.574 7 C 0.243 3.757 8 C -0.520 4.520 9 H 0.057 0.943 10 C 0.061 3.939 11 N -0.895 5.895 12 Si 0.896 3.104 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.284 1.284 16 C 0.068 3.932 17 C -0.179 4.179 18 C -0.193 4.193 19 H 0.068 0.932 20 H 0.019 0.981 21 H 0.063 0.937 22 H 0.351 0.649 23 H 0.053 0.947 24 H 0.093 0.907 25 H 0.043 0.957 26 H 0.038 0.962 27 H 0.262 0.738 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.249 3.718 0.530 13.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.312 5.312 3 C -0.091 4.091 4 C 0.292 3.708 5 O -0.399 6.399 6 N -0.305 5.305 7 C 0.124 3.876 8 C -0.559 4.559 9 H 0.076 0.924 10 C -0.141 4.141 11 N -0.534 5.534 12 Si 0.724 3.276 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.210 1.210 16 C -0.038 4.038 17 C -0.217 4.217 18 C -0.232 4.232 19 H 0.087 0.913 20 H 0.037 0.963 21 H 0.082 0.918 22 H 0.170 0.830 23 H 0.071 0.929 24 H 0.111 0.889 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.130 0.870 29 H 0.133 0.867 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.673 3.055 -0.277 13.039 hybrid contribution 0.287 0.311 1.873 1.920 sum -12.386 3.366 1.596 12.935 Atomic orbital electron populations 1.22203 0.87830 1.01852 1.00097 1.60045 1.06840 1.12892 1.51382 1.21905 0.94095 0.91205 1.01921 1.20162 0.88648 0.84144 0.77814 1.90686 1.71408 1.29015 1.48777 1.47735 1.09238 1.04147 1.69414 1.19347 0.72150 0.98332 0.97762 1.21445 0.91430 1.49603 0.93395 0.92449 1.24930 0.97043 0.95214 0.96941 1.69936 1.04166 1.50352 1.28947 0.86478 0.79142 0.77773 0.84250 1.19872 1.20900 1.20994 1.21519 0.96559 0.84480 1.01232 1.23283 1.01716 0.95294 1.01370 1.23434 1.03370 1.04068 0.92341 0.91323 0.96268 0.91847 0.82986 0.92944 0.88858 0.93943 0.94437 0.92793 0.86979 0.86715 0.89092 0.89547 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.70 60.07 0.64 0.97 16 2 N -0.68 -10.36 6.45 -122.43 -0.79 -11.15 16 3 C 0.04 0.64 4.69 -4.98 -0.02 0.62 16 4 C 0.51 10.82 7.68 -10.99 -0.08 10.74 16 5 O -0.52 -13.58 15.90 5.56 0.09 -13.49 16 6 N -0.57 -12.32 2.79 -167.47 -0.47 -12.78 16 7 C 0.24 6.35 4.66 -5.20 -0.02 6.33 16 8 C -0.52 -14.60 8.70 -34.44 -0.30 -14.90 16 9 H 0.06 1.62 7.21 -52.49 -0.38 1.25 16 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 12 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 C 0.07 1.13 5.78 -67.93 -0.39 0.74 16 17 C -0.18 -2.89 9.74 -26.69 -0.26 -3.15 16 18 C -0.19 -3.10 10.28 -26.69 -0.27 -3.38 16 19 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 20 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.35 5.52 8.59 -39.29 -0.34 5.19 16 23 H 0.05 0.73 7.87 -51.93 -0.41 0.32 16 24 H 0.09 1.28 7.96 -51.93 -0.41 0.86 16 25 H 0.04 1.27 7.50 -51.93 -0.39 0.88 16 26 H 0.04 0.98 5.98 -51.93 -0.31 0.67 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.11 1.48 7.13 -51.93 -0.37 1.11 16 29 H 0.11 2.23 6.11 -51.93 -0.32 1.91 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.11 2.10 6.93 -51.93 -0.36 1.74 16 LS Contribution 271.27 15.07 4.09 4.09 Total: -1.00 -32.49 271.27 -6.71 -39.21 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -4.53 Total: 3.45 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -0.81 Total: -0.40 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -0.52 Total: -49.77 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.49 -6.71 -39.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038099466.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.649 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds