Wall clock time and date at job start Mon Mar 30 2020 02:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46891 * 111.00339 * 2 1 4 4 C 1.50700 * 109.47234 * 180.02562 * 3 2 1 5 5 O 1.21276 * 119.99908 * 5.03148 * 4 3 2 6 6 N 1.34776 * 120.00204 * 185.02697 * 4 3 2 7 7 C 1.46493 * 120.00258 * 184.79325 * 6 4 3 8 8 C 1.50701 * 109.47109 * 270.27541 * 7 6 4 9 9 H 1.07997 * 119.99827 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00121 * 179.97438 * 8 7 6 11 11 N 1.31508 * 120.00084 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99791 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47233 * 0.02562 * 12 10 8 14 14 H 1.48495 * 109.46803 * 119.99934 * 12 10 8 15 15 H 1.48502 * 109.46900 * 240.00019 * 12 10 8 16 16 C 1.46501 * 120.00079 * 5.06263 * 6 4 3 17 17 C 1.52993 * 117.50416 * 182.73645 * 16 6 4 18 18 C 1.53005 * 117.49664 * 114.07350 * 16 6 4 19 19 H 1.08995 * 109.47252 * 179.97438 * 1 2 3 20 20 H 1.09007 * 109.46936 * 299.99763 * 1 2 3 21 21 H 1.08993 * 109.47067 * 59.99291 * 1 2 3 22 22 H 1.00903 * 110.99483 * 123.95771 * 2 1 3 23 23 H 1.09005 * 109.47160 * 60.00174 * 3 2 1 24 24 H 1.08997 * 109.47305 * 300.00516 * 3 2 1 25 25 H 1.09004 * 109.47219 * 30.26762 * 7 6 4 26 26 H 1.09000 * 109.47414 * 150.27301 * 7 6 4 27 27 H 0.97000 * 119.99973 * 180.02562 * 11 10 8 28 28 H 1.09001 * 115.55213 * 328.41165 * 16 6 4 29 29 H 1.09004 * 117.49905 * 0.02562 * 17 16 6 30 30 H 1.09000 * 117.50447 * 145.02527 * 17 16 6 31 31 H 1.09000 * 117.49746 * 214.98088 * 18 16 6 32 32 H 1.08998 * 117.49848 * 359.97438 * 18 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.5020 1.3310 -0.0006 5 8 4.0801 0.2690 -0.0932 6 7 4.2068 2.4753 0.1015 7 6 5.6676 2.4478 -0.0045 8 6 6.2668 2.2455 1.3634 9 1 5.6237 2.1476 2.2255 10 6 7.6360 2.1853 1.5143 11 7 8.4191 2.3049 0.4645 12 14 8.3787 1.9352 3.2100 13 1 7.2915 1.8307 4.2161 14 1 9.1825 0.6866 3.2190 15 1 9.2525 3.0889 3.5427 16 6 3.5124 3.7459 0.3245 17 6 4.3622 5.0174 0.3675 18 6 3.7542 4.4588 1.6566 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 1.8305 -0.5262 0.7814 23 1 1.6461 1.8947 0.8900 24 1 1.6460 1.8947 -0.8899 25 1 5.9691 1.6290 -0.6579 26 1 6.0197 3.3923 -0.4193 27 1 9.3823 2.2622 0.5706 28 1 2.5167 3.8206 -0.1128 29 1 5.4380 4.9087 0.2295 30 1 3.9256 5.9287 -0.0411 31 1 2.9178 5.0028 2.0953 32 1 4.4295 3.9822 2.3671 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038099466.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:52 Heat of formation + Delta-G solvation = -25.118607 kcal Electronic energy + Delta-G solvation = -14412.240309 eV Core-core repulsion = 11987.005065 eV Total energy + Delta-G solvation = -2425.235245 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.83906 -38.30773 -36.43376 -35.15947 -33.76133 -30.44610 -28.31286 -25.41633 -24.13445 -23.34351 -22.86055 -19.83730 -18.72341 -18.35341 -17.28615 -16.78211 -16.47012 -15.69068 -15.25657 -15.06731 -14.88677 -14.32477 -13.92697 -13.40669 -13.36706 -13.03463 -12.79921 -12.73490 -12.56047 -12.20904 -12.10053 -11.95441 -11.44988 -11.32309 -10.63978 -10.54510 -9.39490 -9.23870 -8.22498 -6.36025 1.33152 1.35803 1.46921 1.77882 2.20431 2.39120 3.05618 3.07994 3.34254 3.69549 3.99895 4.11216 4.23489 4.34438 4.39092 4.61408 4.70620 4.82671 4.92139 5.06286 5.07957 5.18866 5.25737 5.48386 5.56497 5.82311 5.97674 6.06290 6.31527 6.70866 6.82101 7.28652 7.49798 8.84519 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.030673 B = 0.009374 C = 0.008205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.639927 B = 2986.280344 C = 3411.627125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.705 5.705 3 C 0.059 3.941 4 C 0.494 3.506 5 O -0.584 6.584 6 N -0.581 5.581 7 C 0.259 3.741 8 C -0.528 4.528 9 H 0.050 0.950 10 C 0.006 3.994 11 N -0.929 5.929 12 Si 0.963 3.037 13 H -0.268 1.268 14 H -0.283 1.283 15 H -0.269 1.269 16 C 0.058 3.942 17 C -0.179 4.179 18 C -0.185 4.185 19 H 0.077 0.923 20 H 0.036 0.964 21 H 0.075 0.925 22 H 0.343 0.657 23 H 0.081 0.919 24 H 0.121 0.879 25 H -0.009 1.009 26 H 0.031 0.969 27 H 0.266 0.734 28 H 0.163 0.837 29 H 0.071 0.929 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.720 5.109 1.523 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.337 5.337 3 C -0.073 4.073 4 C 0.283 3.717 5 O -0.464 6.464 6 N -0.312 5.312 7 C 0.138 3.862 8 C -0.567 4.567 9 H 0.069 0.931 10 C -0.192 4.192 11 N -0.569 5.569 12 Si 0.788 3.212 13 H -0.192 1.192 14 H -0.209 1.209 15 H -0.194 1.194 16 C -0.046 4.046 17 C -0.217 4.217 18 C -0.224 4.224 19 H 0.096 0.904 20 H 0.054 0.946 21 H 0.094 0.906 22 H 0.161 0.839 23 H 0.098 0.902 24 H 0.139 0.861 25 H 0.009 0.991 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.180 0.820 29 H 0.090 0.910 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.193 4.489 0.719 15.859 hybrid contribution 1.038 -0.113 1.526 1.849 sum -14.154 4.376 2.245 14.985 Atomic orbital electron populations 1.22288 0.84971 1.03026 1.01423 1.60063 1.09469 1.12653 1.51472 1.21830 0.88844 0.92243 1.04375 1.21355 0.91335 0.82969 0.76087 1.90646 1.73169 1.31194 1.51386 1.47742 1.07555 1.06663 1.69209 1.18781 0.75755 0.95792 0.95901 1.21641 0.91818 1.49414 0.93840 0.93141 1.25824 0.97577 0.94840 1.00976 1.70052 1.04563 1.51168 1.31164 0.85428 0.78364 0.77966 0.79434 1.19241 1.20855 1.19403 1.22082 0.98083 0.82160 1.02297 1.23281 0.99509 0.96883 1.01995 1.23416 1.03881 1.03707 0.91347 0.90419 0.94589 0.90615 0.83883 0.90154 0.86083 0.99052 0.95081 0.92487 0.82003 0.91012 0.84811 0.85005 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.70 127.69 1.37 1.96 16 2 N -0.70 -20.17 6.45 -541.25 -3.49 -23.66 16 3 C 0.06 1.68 4.69 85.56 0.40 2.08 16 4 C 0.49 21.15 7.68 87.66 0.67 21.82 16 5 O -0.58 -31.59 15.90 -3.02 -0.05 -31.64 16 6 N -0.58 -25.12 2.79 -802.16 -2.23 -27.35 16 7 C 0.26 14.23 4.66 85.63 0.40 14.63 16 8 C -0.53 -30.79 8.70 25.60 0.22 -30.56 16 9 H 0.05 2.94 7.21 -2.91 -0.02 2.92 16 10 C 0.01 0.38 5.46 84.66 0.46 0.84 16 11 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 12 Si 0.96 45.78 29.54 68.60 2.03 47.81 16 13 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 14 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 16 C 0.06 1.77 5.78 44.99 0.26 2.03 16 17 C -0.18 -5.45 9.74 30.62 0.30 -5.15 16 18 C -0.19 -5.47 10.28 30.62 0.31 -5.16 16 19 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 20 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 21 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.34 10.58 8.59 -89.69 -0.77 9.81 16 23 H 0.08 1.87 7.87 -2.38 -0.02 1.85 16 24 H 0.12 2.79 7.96 -2.39 -0.02 2.77 16 25 H -0.01 -0.55 7.50 -2.38 -0.02 -0.57 16 26 H 0.03 1.73 5.98 -2.39 -0.01 1.72 16 27 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 28 H 0.16 3.39 7.13 -2.39 -0.02 3.37 16 29 H 0.07 2.84 6.11 -2.38 -0.01 2.83 16 30 H 0.13 2.90 8.14 -2.39 -0.02 2.89 16 31 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.07 2.64 6.93 -2.39 -0.02 2.62 16 Total: -1.00 -75.63 271.27 1.28 -74.35 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.34 Total: 14.81 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 4.40 Total: 2.48 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -5.44 Total: -107.82 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -0.05 Total: -31.64 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -75.63 1.28 -74.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038099466.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.233 kcal (2) G-P(sol) polarization free energy of solvation -75.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds