Wall clock time and date at job start Mon Mar 30 2020 03:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48505 * 109.46672 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46691 * 299.99226 * 3 2 1 6 6 H 1.48497 * 109.47025 * 59.99608 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 H 1.09002 * 109.47196 * 55.00329 * 12 11 10 14 14 C 1.53000 * 109.47341 * 295.00521 * 12 11 10 15 15 C 1.53001 * 109.47194 * 180.02562 * 14 12 11 16 16 C 1.52990 * 109.47179 * 59.99569 * 15 14 12 17 17 C 1.53005 * 109.47373 * 299.99964 * 16 15 14 18 18 C 1.52997 * 109.47085 * 60.00231 * 17 16 15 19 19 H 1.09001 * 109.46746 * 59.99705 * 18 17 16 20 20 O 1.42891 * 109.47221 * 179.97438 * 18 17 16 21 21 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 23 23 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 24 24 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 25 25 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 26 26 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 27 27 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 28 28 H 1.09002 * 109.46818 * 300.00038 * 14 12 11 29 29 H 1.08994 * 109.47281 * 59.99487 * 14 12 11 30 30 H 1.08995 * 109.46947 * 180.02562 * 15 14 12 31 31 H 1.09006 * 109.46733 * 299.99162 * 15 14 12 32 32 H 1.08997 * 109.47838 * 60.00116 * 16 15 14 33 33 H 1.09004 * 109.47257 * 180.02562 * 16 15 14 34 34 H 1.09003 * 109.46928 * 180.02562 * 17 16 15 35 35 H 1.09002 * 109.47110 * 300.00171 * 17 16 15 36 36 H 0.96699 * 114.00160 * 300.00065 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3962 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 6 2.4743 -6.1501 0.0018 13 1 3.1584 -6.0429 0.8437 14 6 3.2693 -6.1423 -1.3054 15 6 4.2630 -7.3056 -1.3050 16 6 3.5017 -8.6266 -1.1790 17 6 2.7068 -8.6345 0.1284 18 6 1.7130 -7.4713 0.1280 19 1 1.0289 -7.5781 -0.7139 20 8 0.9702 -7.4789 1.3486 21 1 -0.4850 0.8400 -0.0004 22 1 0.6246 -2.5571 -0.8896 23 1 0.6240 -2.5567 0.8904 24 1 2.8718 -3.6044 0.8905 25 1 2.8717 -3.6045 -0.8894 26 1 0.8537 -5.0446 0.8914 27 1 0.8531 -5.0451 -0.8886 28 1 2.5852 -6.2495 -2.1472 29 1 3.8113 -5.2009 -1.3954 30 1 4.8296 -7.2997 -2.2361 31 1 4.9472 -7.1987 -0.4632 32 1 2.8176 -8.7336 -2.0207 33 1 4.2097 -9.4554 -1.1782 34 1 2.1647 -9.5759 0.2183 35 1 3.3909 -8.5277 0.9702 36 1 0.4618 -8.2885 1.4946 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038434330.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:53 Heat of formation + Delta-G solvation = -121.462532 kcal Electronic energy + Delta-G solvation = -14335.100147 eV Core-core repulsion = 12009.227460 eV Total energy + Delta-G solvation = -2325.872687 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.26577 -36.75888 -36.12462 -34.47701 -31.71747 -30.50977 -28.07768 -25.25900 -23.63513 -22.34899 -21.35190 -20.74802 -18.44988 -18.14977 -16.61274 -16.17003 -16.05143 -15.33609 -15.07768 -14.61092 -14.39831 -14.00949 -13.70098 -13.65885 -13.16017 -12.94065 -12.60003 -12.52346 -12.36149 -12.14710 -11.86070 -11.62771 -11.54268 -11.34748 -11.26948 -11.08669 -10.79771 -10.56435 -10.46867 -8.20618 -6.32612 1.38496 1.39652 1.53252 2.40440 3.11716 3.34839 3.70929 3.80882 4.04309 4.17785 4.30232 4.39733 4.45548 4.52091 4.54960 4.57451 4.80023 4.85513 4.95797 5.02103 5.11378 5.20130 5.23857 5.25108 5.32889 5.35699 5.40617 5.45871 5.54413 5.59491 5.78276 5.86152 6.25202 6.84802 6.98538 7.36769 8.91752 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.052102 B = 0.005729 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.278384 B = 4886.069536 C = 5257.216148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.022 3.978 10 C -0.096 4.096 11 C -0.101 4.101 12 C -0.075 4.075 13 H 0.061 0.939 14 C -0.115 4.115 15 C -0.119 4.119 16 C -0.114 4.114 17 C -0.144 4.144 18 C 0.109 3.891 19 H 0.056 0.944 20 O -0.586 6.586 21 H 0.264 0.736 22 H -0.011 1.011 23 H -0.016 1.016 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.707 -18.501 -2.341 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.134 4.134 11 C -0.139 4.139 12 C -0.093 4.093 13 H 0.080 0.920 14 C -0.152 4.152 15 C -0.157 4.157 16 C -0.151 4.151 17 C -0.181 4.181 18 C 0.050 3.950 19 H 0.074 0.926 20 O -0.394 6.394 21 H 0.073 0.927 22 H 0.008 0.992 23 H 0.002 0.998 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 6.838 -17.815 -2.284 19.218 hybrid contribution -0.370 0.647 0.116 0.754 sum 6.469 -17.167 -2.168 18.473 Atomic orbital electron populations 1.70123 1.07939 1.27741 1.51818 1.26057 0.95815 1.03574 0.94643 0.85345 0.79025 0.78447 0.77903 1.18517 1.20081 1.20280 1.21762 0.93525 0.92470 1.50420 0.92228 1.19038 0.94545 0.93561 0.94338 1.21477 0.97894 0.93823 1.00190 1.21488 0.97811 0.93972 1.00640 1.21115 0.96422 0.93099 0.98712 0.92045 1.21610 0.98157 0.99366 0.96074 1.21573 0.97556 0.94122 1.02417 1.21490 0.99169 0.97519 0.96956 1.22215 0.98751 0.98146 0.99029 1.21855 0.92253 0.94730 0.86140 0.92635 1.86550 1.65914 1.45213 1.41738 0.92742 0.99224 0.99792 0.93975 0.92487 0.93614 0.93154 0.91683 0.92020 0.90627 0.92145 0.91353 0.90177 0.89950 0.91942 0.76058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.33 13.29 21.45 0.28 -59.04 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 3 Si 0.97 45.74 29.54 68.60 2.03 47.76 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.54 -32.70 9.11 25.60 0.23 -32.47 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.02 1.27 4.97 29.85 0.15 1.41 16 10 C -0.10 -4.32 4.91 30.60 0.15 -4.17 16 11 C -0.10 -3.86 4.61 30.60 0.14 -3.72 16 12 C -0.07 -2.22 1.93 -10.79 -0.02 -2.24 16 13 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 14 C -0.11 -2.92 4.96 30.59 0.15 -2.77 16 15 C -0.12 -2.30 5.92 30.59 0.18 -2.12 16 16 C -0.11 -1.82 5.92 30.59 0.18 -1.64 16 17 C -0.14 -2.57 5.54 30.60 0.17 -2.40 16 18 C 0.11 2.62 2.90 30.59 0.09 2.71 16 19 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 20 O -0.59 -15.31 12.56 -148.98 -1.87 -17.19 16 21 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 22 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 23 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 24 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.06 2.42 6.57 -2.39 -0.02 2.41 16 26 H 0.05 1.89 7.54 -2.39 -0.02 1.88 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.73 6.57 -2.39 -0.02 1.72 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.39 6.20 9.08 -74.06 -0.67 5.53 16 Total: -1.00 -69.87 284.59 2.68 -67.19 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.35 Total: 8.43 kcal Atomic # 6 Polarization: -49.03 SS G_CDS: 1.89 Total: -47.15 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.28 Total: -59.04 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -1.87 Total: -17.19 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -69.87 2.68 -67.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038434330.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.273 kcal (2) G-P(sol) polarization free energy of solvation -69.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds