Wall clock time and date at job start Mon Mar 30 2020 03:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47355 * 179.97438 * 11 10 9 13 13 H 1.08999 * 109.46710 * 305.00031 * 12 11 10 14 14 C 1.53001 * 109.47042 * 64.99713 * 12 11 10 15 15 C 1.53003 * 109.47194 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.46651 * 299.99937 * 15 14 12 17 17 C 1.53001 * 109.47270 * 60.00109 * 16 15 14 18 18 C 1.52996 * 109.47018 * 184.99782 * 12 11 10 19 19 H 1.08993 * 109.47210 * 299.99506 * 18 12 11 20 20 O 1.42898 * 109.47024 * 60.00083 * 18 12 11 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 25 25 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 26 26 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 27 27 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 28 28 H 1.09001 * 109.47239 * 300.00541 * 14 12 11 29 29 H 1.09001 * 109.46917 * 60.00060 * 14 12 11 30 30 H 1.08993 * 109.46941 * 59.99646 * 15 14 12 31 31 H 1.08999 * 109.47018 * 180.02562 * 15 14 12 32 32 H 1.09005 * 109.46999 * 179.97438 * 16 15 14 33 33 H 1.08999 * 109.47584 * 299.99752 * 16 15 14 34 34 H 1.08996 * 109.47274 * 60.00093 * 17 16 15 35 35 H 1.09010 * 109.47324 * 179.97438 * 17 16 15 36 36 H 0.96703 * 113.99610 * 180.02562 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0018 13 1 3.1585 -6.0428 -0.8436 14 6 3.2693 -6.1422 1.3055 15 6 4.2640 -7.3048 1.3046 16 6 3.5035 -8.6264 1.1780 17 6 2.7087 -8.6342 -0.1293 18 6 1.7136 -7.4714 -0.1281 19 1 1.0296 -7.5787 0.7137 20 8 0.9712 -7.4787 -1.3491 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 2.8719 -3.6044 -0.8906 25 1 2.8719 -3.6044 0.8894 26 1 0.8533 -5.0451 0.8886 27 1 0.8539 -5.0446 -0.8913 28 1 3.8113 -5.2008 1.3955 29 1 2.5852 -6.2495 2.1473 30 1 4.9479 -7.1971 0.4628 31 1 4.8300 -7.2995 2.2361 32 1 4.2122 -9.4547 1.1769 33 1 2.8195 -8.7341 2.0198 34 1 3.3926 -8.5266 -0.9711 35 1 2.1672 -9.5760 -0.2197 36 1 0.4628 -8.2882 -1.4955 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038434332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:57 Heat of formation + Delta-G solvation = -121.340642 kcal Electronic energy + Delta-G solvation = -14334.830678 eV Core-core repulsion = 12008.963276 eV Total energy + Delta-G solvation = -2325.867402 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.152 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.26394 -36.75738 -36.12337 -34.47510 -31.71603 -30.50797 -28.07535 -25.25589 -23.63465 -22.34685 -21.35150 -20.74828 -18.44100 -18.14914 -16.61459 -16.17248 -16.05134 -15.33507 -15.07616 -14.61049 -14.38323 -14.00964 -13.70416 -13.65861 -13.16302 -12.91160 -12.59548 -12.50703 -12.39414 -12.15587 -11.85759 -11.62610 -11.54249 -11.34545 -11.29218 -11.08544 -10.79863 -10.55261 -10.46771 -8.20079 -6.32302 1.38561 1.42758 1.50726 2.40757 3.12057 3.34923 3.70918 3.80823 4.04273 4.17815 4.30290 4.39667 4.45572 4.52094 4.54958 4.57404 4.80025 4.85502 4.95787 5.02105 5.11366 5.20168 5.23797 5.25109 5.32884 5.35661 5.40559 5.45857 5.54258 5.59461 5.78341 5.86156 6.25320 6.84673 6.98483 7.36952 8.91844 Molecular weight = 212.15amu Principal moments of inertia in cm(-1) A = 0.052096 B = 0.005729 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.335664 B = 4885.965220 C = 5257.110974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.969 3.031 4 H -0.281 1.281 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.096 4.096 11 C -0.102 4.102 12 C -0.075 4.075 13 H 0.061 0.939 14 C -0.115 4.115 15 C -0.119 4.119 16 C -0.114 4.114 17 C -0.144 4.144 18 C 0.109 3.891 19 H 0.056 0.944 20 O -0.586 6.586 21 H 0.264 0.736 22 H -0.011 1.011 23 H -0.017 1.017 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.082 0.918 36 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.710 -18.479 2.344 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.206 1.206 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.134 4.134 11 C -0.139 4.139 12 C -0.093 4.093 13 H 0.080 0.920 14 C -0.152 4.152 15 C -0.157 4.157 16 C -0.151 4.151 17 C -0.181 4.181 18 C 0.050 3.950 19 H 0.074 0.926 20 O -0.394 6.394 21 H 0.073 0.927 22 H 0.008 0.992 23 H 0.002 0.998 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 6.833 -17.790 2.287 19.194 hybrid contribution -0.350 0.638 -0.117 0.737 sum 6.483 -17.152 2.169 18.464 Atomic orbital electron populations 1.70111 1.07941 1.27869 1.51646 1.26055 0.95815 1.03562 0.94604 0.85454 0.78255 0.77791 0.79261 1.20626 1.18926 1.19186 1.21708 0.93531 0.92489 1.50692 0.92208 1.19029 0.94533 0.93541 0.94315 1.21478 0.97898 0.93823 1.00187 1.21486 0.97814 0.93976 1.00636 1.21115 0.96425 0.93099 0.98709 0.92047 1.21612 0.98148 0.99374 0.96072 1.21575 0.97558 0.94123 1.02411 1.21493 0.99174 0.97520 0.96957 1.22222 0.98738 0.98148 0.99026 1.21866 0.92252 0.94731 0.86136 0.92620 1.86554 1.65936 1.45210 1.41713 0.92736 0.99248 0.99816 0.93974 0.92483 0.93159 0.93618 0.92026 0.91681 0.92135 0.90627 0.90178 0.91353 0.91941 0.89955 0.76061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.34 13.29 21.45 0.28 -59.05 16 2 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 3 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 5 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.55 -32.85 9.11 25.60 0.23 -32.62 16 8 H 0.06 3.43 7.74 -2.91 -0.02 3.40 16 9 C 0.02 1.30 4.97 29.85 0.15 1.45 16 10 C -0.10 -4.32 4.91 30.59 0.15 -4.17 16 11 C -0.10 -3.87 4.61 30.59 0.14 -3.73 16 12 C -0.07 -2.22 1.93 -10.79 -0.02 -2.24 16 13 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 14 C -0.11 -2.92 4.96 30.60 0.15 -2.77 16 15 C -0.12 -2.30 5.92 30.59 0.18 -2.12 16 16 C -0.11 -1.82 5.92 30.59 0.18 -1.64 16 17 C -0.14 -2.57 5.55 30.61 0.17 -2.40 16 18 C 0.11 2.62 2.90 30.61 0.09 2.71 16 19 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 20 O -0.59 -15.32 12.56 -148.98 -1.87 -17.19 16 21 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 22 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 23 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 24 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.06 2.42 6.57 -2.39 -0.02 2.41 16 26 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.04 1.89 7.53 -2.39 -0.02 1.87 16 28 H 0.06 1.73 6.57 -2.39 -0.02 1.72 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.39 6.20 9.08 -74.06 -0.67 5.53 16 Total: -1.00 -69.80 284.59 2.68 -67.12 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.35 Total: 8.64 kcal Atomic # 6 Polarization: -49.12 SS G_CDS: 1.89 Total: -47.23 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.28 Total: -59.05 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -1.87 Total: -17.19 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -69.80 2.68 -67.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038434332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.216 kcal (2) G-P(sol) polarization free energy of solvation -69.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds