Wall clock time and date at job start Mon Mar 30 2020 02:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46848 * 110.99918 * 2 1 4 4 C 1.53037 * 109.52381 * 174.15634 * 3 2 1 5 5 C 1.53123 * 109.27398 * 59.18254 * 4 3 2 6 6 C 1.53120 * 109.21163 * 302.31409 * 5 4 3 7 7 H 1.08997 * 109.50353 * 297.74224 * 6 5 4 8 8 N 1.46505 * 109.50132 * 177.62814 * 6 5 4 9 9 C 1.34777 * 119.99892 * 154.99778 * 8 6 5 10 10 O 1.21683 * 120.00163 * 0.02562 * 9 8 6 11 11 C 1.46374 * 119.99591 * 179.97438 * 9 8 6 12 12 H 1.07996 * 120.00351 * 359.97438 * 11 9 8 13 13 C 1.40051 * 119.99322 * 180.02562 * 11 9 8 14 14 N 1.30664 * 120.00520 * 359.97438 * 13 11 9 15 15 Si 1.86807 * 119.99669 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47066 * 59.99755 * 15 13 11 17 17 H 1.48500 * 109.47285 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47176 * 299.99916 * 15 13 11 19 19 C 1.46845 * 111.00045 * 235.79412 * 2 1 3 20 20 H 1.09002 * 109.47105 * 56.04040 * 1 2 3 21 21 H 1.08996 * 109.47437 * 176.04524 * 1 2 3 22 22 H 1.09004 * 109.47513 * 296.04390 * 1 2 3 23 23 H 1.09006 * 109.46097 * 54.14433 * 3 2 1 24 24 H 1.08996 * 109.46972 * 294.17743 * 3 2 1 25 25 H 1.08996 * 109.50616 * 299.24564 * 4 3 2 26 26 H 1.08993 * 109.53667 * 179.13827 * 4 3 2 27 27 H 1.09002 * 109.52319 * 62.25202 * 5 4 3 28 28 H 1.08995 * 109.52318 * 182.37884 * 5 4 3 29 29 H 0.96994 * 120.00043 * 334.99846 * 8 6 5 30 30 H 0.97008 * 120.00197 * 180.02562 * 14 13 11 31 31 H 1.09003 * 109.45905 * 305.85870 * 19 2 1 32 32 H 1.09002 * 109.46112 * 65.82067 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 0.1469 5 6 4.1188 0.5370 -1.0143 6 6 3.5194 -0.8720 -1.0214 7 1 3.7827 -1.3841 -0.0960 8 7 4.0473 -1.6222 -2.1637 9 6 4.0901 -2.9687 -2.1238 10 8 3.6899 -3.5613 -1.1393 11 6 4.6170 -3.7183 -3.2654 12 1 4.9711 -3.1924 -4.1397 13 6 4.6610 -5.1175 -3.2241 14 7 4.2321 -5.7538 -2.1665 15 14 5.3341 -6.0742 -4.6806 16 1 6.7444 -5.6779 -4.9240 17 1 5.2725 -7.5288 -4.3885 18 1 4.5209 -5.7762 -5.8870 19 6 1.9953 -0.7707 -1.1338 20 1 -0.3633 0.5741 -0.8524 21 1 -0.3634 -1.0252 -0.0709 22 1 -0.3634 0.4512 0.9233 23 1 1.5633 1.9257 0.8330 24 1 1.7325 1.8609 -0.9375 25 1 3.7813 0.8568 1.0906 26 1 3.9104 2.3510 0.1315 27 1 3.8887 1.0356 -1.9560 28 1 5.1998 0.4724 -0.8910 29 1 4.3660 -1.1499 -2.9487 30 1 4.2629 -6.7229 -2.1377 31 1 1.5633 -1.7714 -1.1243 32 1 1.7324 -0.2707 -2.0660 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040716106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:24 Heat of formation + Delta-G solvation = -45.055780 kcal Electronic energy + Delta-G solvation = -14409.841099 eV Core-core repulsion = 11983.741313 eV Total energy + Delta-G solvation = -2426.099785 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 212.127 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.91927 -36.80020 -33.80432 -32.49353 -31.83124 -28.95835 -26.50718 -25.98564 -22.67100 -22.22039 -19.67141 -19.38250 -17.08088 -15.65661 -15.31058 -14.86263 -14.60152 -14.23605 -14.00768 -13.41843 -12.82148 -12.39758 -12.36077 -12.26465 -11.92381 -11.41353 -11.23721 -11.03461 -10.86162 -10.66460 -10.42549 -10.28973 -10.15457 -9.96132 -8.82212 -8.06830 -7.57751 -7.46237 -6.14915 -4.61073 3.17452 3.22242 3.24134 4.06578 4.19541 4.62206 4.85926 5.12613 5.19543 5.29126 5.45184 5.57691 5.63167 5.73153 5.86200 5.94541 5.96919 6.00697 6.02527 6.12420 6.28256 6.34725 6.72517 6.83308 7.33932 7.35598 7.46141 7.97457 8.16482 8.37093 9.05478 9.58549 10.64052 10.83175 Molecular weight = 212.13amu Principal moments of inertia in cm(-1) A = 0.055274 B = 0.007237 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.446386 B = 3868.076598 C = 4113.320358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.542 5.542 3 C 0.056 3.944 4 C -0.113 4.113 5 C -0.127 4.127 6 C 0.160 3.840 7 H 0.084 0.916 8 N -0.763 5.763 9 C 0.555 3.445 10 O -0.577 6.577 11 C -0.547 4.547 12 H 0.066 0.934 13 C 0.088 3.912 14 N -0.768 5.768 15 Si 0.907 3.093 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.269 1.269 19 C 0.050 3.950 20 H 0.020 0.980 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.028 0.972 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.379 0.621 30 H 0.268 0.732 31 H 0.081 0.919 32 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 11.995 0.785 12.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.267 5.267 3 C -0.072 4.072 4 C -0.151 4.151 5 C -0.165 4.165 6 C 0.053 3.947 7 H 0.102 0.898 8 N -0.417 5.417 9 C 0.359 3.641 10 O -0.459 6.459 11 C -0.585 4.585 12 H 0.084 0.916 13 C -0.132 4.132 14 N -0.397 5.397 15 Si 0.732 3.268 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.194 1.194 19 C -0.079 4.079 20 H 0.038 0.962 21 H 0.087 0.913 22 H 0.082 0.918 23 H 0.088 0.912 24 H 0.046 0.954 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.210 0.790 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.115 11.120 2.048 11.728 hybrid contribution 0.121 0.175 -1.931 1.942 sum -2.994 11.295 0.117 11.686 Atomic orbital electron populations 1.22318 0.87719 1.01984 1.00005 1.61845 1.07199 1.13044 1.44576 1.22087 0.95789 0.89575 0.99780 1.21524 0.94337 0.99642 0.99602 1.21871 1.00496 0.96009 0.98163 1.20446 0.90658 0.90697 0.92899 0.89830 1.46191 1.69775 1.07733 1.18008 1.18214 0.78541 0.79028 0.88355 1.90607 1.52215 1.67903 1.35210 1.20864 1.44589 0.91208 1.01790 0.91571 1.25696 0.93418 0.97949 0.96113 1.70011 1.34313 1.08546 1.26790 0.86456 0.79964 0.78459 0.81963 1.19314 1.20569 1.19355 1.22621 0.97415 0.98143 0.89736 0.96171 0.91307 0.91755 0.91223 0.95376 0.90926 0.91690 0.92468 0.91470 0.79008 0.92084 0.90069 0.95726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.62 60.06 0.58 0.96 16 2 N -0.54 -8.79 4.91 -242.87 -1.19 -9.99 16 3 C 0.06 0.74 5.46 -3.83 -0.02 0.72 16 4 C -0.11 -1.48 6.09 -26.65 -0.16 -1.64 16 5 C -0.13 -1.94 5.47 -26.61 -0.15 -2.09 16 6 C 0.16 3.20 2.62 -67.78 -0.18 3.02 16 7 H 0.08 1.96 7.58 -51.93 -0.39 1.56 16 8 N -0.76 -17.34 5.08 -55.07 -0.28 -17.62 16 9 C 0.55 15.93 7.72 -12.99 -0.10 15.83 16 10 O -0.58 -18.85 14.68 5.20 0.08 -18.77 16 11 C -0.55 -15.62 9.54 -35.63 -0.34 -15.96 16 12 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 13 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 14 N -0.77 -23.28 11.83 55.55 0.66 -22.62 16 15 Si 0.91 20.31 29.56 -169.99 -5.02 15.29 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 C 0.05 0.95 5.05 -3.77 -0.02 0.93 16 20 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 21 H 0.07 0.98 8.02 -51.93 -0.42 0.56 16 22 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.38 7.59 8.58 -40.82 -0.35 7.24 16 30 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 31 H 0.08 1.82 8.04 -51.93 -0.42 1.40 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 266.07 15.07 4.01 4.01 Total: -1.00 -33.55 266.07 -7.16 -40.71 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.93 Total: 4.82 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -0.48 Total: 4.16 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: -0.82 Total: -50.22 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.08 Total: -18.77 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -33.55 -7.16 -40.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040716106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.342 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds